Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16770 256 / 2e-83 MYB ATMYB9 myb domain protein 9 (.1.2) AT1G34670 246 / 4e-79 MYB ATMYB93 myb domain protein 93 (.1) AT3G02940 244 / 6e-79 MYB ATMYB107 myb domain protein 107 (.1) AT5G10280 241 / 7e-78 MYB ATMYB92, AtMYB64 myb domain protein 92 (.1) AT4G17785 231 / 1e-73 MYB ATMYB39 myb domain protein 39 (.1) AT5G65230 230 / 1e-73 MYB ATMYB53 myb domain protein 53 (.1) AT4G21440 221 / 8e-70 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 102 (.1) AT5G54230 208 / 4e-65 MYB ATMYB49 myb domain protein 49 (.1) AT4G05100 205 / 8e-64 MYB ATMYB74 myb domain protein 74 (.1) AT3G61250 201 / 2e-62 MYB LMI2, ATMYB17 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G094200 [exp] 516 / 0 AT5G16770 251 / 1e-81 myb domain protein 9 (.1.2) Potri.019G050900 [exp] 279 / 2e-92 AT5G16770 279 / 2e-92 myb domain protein 9 (.1.2) Potri.005G074500 [exp] 248 / 2e-80 AT1G34670 290 / 1e-96 myb domain protein 93 (.1) Potri.007G093900 [exp] 246 / 1e-79 AT1G34670 289 / 6e-96 myb domain protein 93 (.1) Potri.005G164900 [exp] 246 / 2e-79 AT1G34670 309 / 7e-104 myb domain protein 93 (.1) Potri.002G096800 [exp] 242 / 6e-78 AT1G34670 305 / 2e-102 myb domain protein 93 (.1) Potri.004G033100 [exp] 214 / 1e-66 AT4G21440 293 / 4e-97 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.011G125900 [exp] 213 / 1e-66 AT4G21440 281 / 1e-92 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.011G041600 [exp] 211 / 2e-65 AT4G21440 311 / 2e-104 A. THALIANA MYB 4, MYB-like 102 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040139 [exp] 249 / 2e-82 AT5G16770 231 / 9e-76 myb domain protein 9 (.1.2) Lus10041142 [exp] 250 / 2e-81 AT1G34670 315 / 2e-106 myb domain protein 93 (.1) Lus10036472 [exp] 249 / 5e-81 AT5G10280 307 / 1e-103 myb domain protein 92 (.1) Lus10001093 [exp] 244 / 7e-79 AT5G16770 232 / 4e-74 myb domain protein 9 (.1.2) Lus10011031 [exp] 226 / 3e-71 AT5G16770 223 / 3e-70 myb domain protein 9 (.1.2) Lus10018418 [exp] 211 / 4e-66 AT4G21440 334 / 5e-114 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10003001 [exp] 220 / 1e-65 AT3G07840 362 / 1e-118 Pectin lyase-like superfamily protein (.1) Lus10006740 [exp] 213 / 2e-65 AT4G21440 317 / 6e-106 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10002593 [exp] 209 / 2e-65 AT4G21440 330 / 2e-112 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10020085 [exp] 207 / 2e-64 AT4G21440 315 / 2e-106 A. THALIANA MYB 4, MYB-like 102 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.001G139900.1 pacid=42788086 polypeptide=Potri.001G139900.1.p locus=Potri.001G139900 ID=Potri.001G139900.1.v4.1 annot-version=v4.1 ATGGTTAGGTCTCCTCGTAGCCATGGCAGTGACTTCAAGAAAGGGCCATGGACGCCGGAGGAGGATGAGAAGCTAGTTGATTATATTAAGAGGAACGGTC ATGAAAACTGGAAAGCACTCCCTAAGCTTGCAGGGTTGAATAGGTGCGGGAAGAGCTGCAGATTGAGGTGGACAAATTATCTGAGGCCTGATATCAAGAG AGGAAAATTTTCTGAGGAAGAAGAACGAGTCATCGTCAACCTTCATTCTGTTCTTGGAAACAAGTGGTCAAGGATTGCTAACCATCTTCCGGGACGGACC GACAACGAAATAAAAAACTTTTGGAATACTCACATAAGAAAGAAGCTTCTTCAAATGGGGATTGACCCAAACACTCACAAGCCAAGGACTGATCTAGATC ATTTCTTGAATCTCTCTCAGTTTCTTGGCGCAGCACAGTTTGGCAATACGGCAGATCCATTGGACAATTTTCTACAGTTACAGGCAGATGCCACTCAGTT AGCCAATATCCAGTTGTTGCGAAATCTGTTGCAGATTATGAATACCAACACACTGACAAATCTTGAGAACAACAGTCTCTTAGGATCCCAAAATCCTAAC CTGTTTGAAGGATTGGGCAATGGGGCAACCATCTGCAATACCAAGGAACCATTTAACCCAGTATCTCAGGATCTCTTTAACCCACTTGCTACCCCTCAAG CACCACCCAATGACTTCCAAGCTATCTCGAATTTATGGGCTAGCTATGAAGGTGGATTTGGCCCTGAAGGCCTTAACATCAACAATAACAGCTTGAGCAG TTCCTATGGTACTCAAACAGATCAAAATCCACTTCCTGCATTGGTTTCAGCCTCAACCTCCCCTGGAACTTCCATCGTTAACCAAAAAGAAAGCAAGGGT AACCCATCAAACTACTCCACTGGCACGCCTACCTACACTGTTTTTGAGGGCTGGGAGAAGCTGATCGATGATGACTACTACAGCTCCTACTGGAAAGATA TTCTGGAATAG
AA sequence Show only first row Show all	>Potri.001G139900.1 pacid=42788086 polypeptide=Potri.001G139900.1.p locus=Potri.001G139900 ID=Potri.001G139900.1.v4.1 annot-version=v4.1 MVRSPRSHGSDFKKGPWTPEEDEKLVDYIKRNGHENWKALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSEEEERVIVNLHSVLGNKWSRIANHLPGRT DNEIKNFWNTHIRKKLLQMGIDPNTHKPRTDLDHFLNLSQFLGAAQFGNTADPLDNFLQLQADATQLANIQLLRNLLQIMNTNTLTNLENNSLLGSQNPN LFEGLGNGATICNTKEPFNPVSQDLFNPLATPQAPPNDFQAISNLWASYEGGFGPEGLNINNNSLSSSYGTQTDQNPLPALVSASTSPGTSIVNQKESKG NPSNYSTGTPTYTVFEGWEKLIDDDYYSSYWKDILE

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G16770	MYB	ATMYB9	myb domain protein 9 (.1.2)		Potri.001G139900 [exp]	0	1
AT2G39430			Disease resistance-responsive ...		Potri.010G211900 [exp]	3.00	0.8560
AT5G63380			AMP-dependent synthetase and l...		Potri.012G095000 [exp]	4.00	0.8532
AT1G27660	bHLH	bHLH110	basic helix-loop-helix (bHLH) ...		Potri.005G119601 [exp]	7.41	0.8403
AT4G08900		ARGAH1	arginine amidohydrolase 1, arg...		Potri.014G067700 [exp]	8.71	0.8327	Pt-PAG1.3
AT4G22790			MATE efflux family protein (.1...		Potri.003G116700 [exp]	14.83	0.8326
AT5G20410		ATMGD2, MGD2	ARABIDOPSIS THALIANA MONOGALAC...		Potri.006G063300 [exp]	15.49	0.8183
AT3G52480			unknown protein		Potri.006G204400 [exp]	16.37	0.8064
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Potri.003G008200 [exp]	18.65	0.8244
AT5G65210	bZIP	TGA1	bZIP transcription factor fami...		Potri.007G085700 [exp]	21.21	0.8156	Pt-STGA1.4
AT5G18270	NAC	ANAC087	Arabidopsis NAC domain contain...		Potri.019G031600 [exp]	21.63	0.8129

Compare expression of checked genes

Potri.001G139900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.