Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45420 234 / 1e-75 MYB maMYB membrane anchored MYB, Duplicated homeodomain-like superfamily protein (.1) AT3G11450 99 / 8e-23 DnaJ domain ;Myb-like DNA-binding domain (.1) AT5G06110 86 / 3e-18 DnaJ domain ;Myb-like DNA-binding domain (.1.2) AT5G58900 56 / 1e-08 MYB Homeodomain-like transcriptional regulator (.1) AT5G23650 50 / 9e-07 MYB Homeodomain-like transcriptional regulator (.1) AT2G38090 47 / 1e-05 MYB MYB-R Duplicated homeodomain-like superfamily protein (.1) AT5G05790 44 / 5e-05 MYB Duplicated homeodomain-like superfamily protein (.1) AT3G11280 42 / 0.0002 MYB Duplicated homeodomain-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G035800 [exp] 94 / 5e-21 AT3G11450 679 / 0.0 DnaJ domain ;Myb-like DNA-binding domain (.1) Potri.003G190000 [exp] 89 / 2e-19 AT3G11450 663 / 0.0 DnaJ domain ;Myb-like DNA-binding domain (.1) Potri.001G248800 [exp] 50 / 6e-07 AT5G58900 312 / 1e-106 Homeodomain-like transcriptional regulator (.1) Potri.009G042600 [exp] 50 / 1e-06 AT5G58900 307 / 1e-104 Homeodomain-like transcriptional regulator (.1) Potri.006G097300 [exp] 48 / 3e-06 AT2G38090 355 / 2e-123 Duplicated homeodomain-like superfamily protein (.1) Potri.016G112300 [exp] 48 / 3e-06 AT2G38090 358 / 9e-125 Duplicated homeodomain-like superfamily protein (.1) Potri.007G076200 [exp] 44 / 0.0001 AT5G08520 293 / 6e-99 Duplicated homeodomain-like superfamily protein (.1) Potri.005G087700 [exp] 41 / 0.0005 AT5G08520 304 / 2e-103 Duplicated homeodomain-like superfamily protein (.1) Potri.002G035000 [exp] 39 / 0.0008 AT1G75250 122 / 5e-38 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018605 [exp] 302 / 3e-102 AT5G45420 247 / 7e-81 membrane anchored MYB, Duplicated homeodomain-like superfamily protein (.1) Lus10039841 [exp] 299 / 5e-101 AT5G45420 249 / 2e-81 membrane anchored MYB, Duplicated homeodomain-like superfamily protein (.1) Lus10036429 [exp] 92 / 3e-23 AT5G45420 93 / 4e-24 membrane anchored MYB, Duplicated homeodomain-like superfamily protein (.1) Lus10026919 [exp] 96 / 1e-21 AT5G06110 752 / 0.0 DnaJ domain ;Myb-like DNA-binding domain (.1.2) Lus10020118 [exp] 92 / 2e-20 AT5G06110 749 / 0.0 DnaJ domain ;Myb-like DNA-binding domain (.1.2) Lus10026920 [exp] 91 / 4e-20 AT5G06110 681 / 0.0 DnaJ domain ;Myb-like DNA-binding domain (.1.2) Lus10020117 [exp] 88 / 5e-19 AT5G06110 736 / 0.0 DnaJ domain ;Myb-like DNA-binding domain (.1.2) Lus10034514 [exp] 55 / 5e-08 AT1G75660 968 / 0.0 5'-3' exoribonuclease 3 (.1) Lus10018209 [exp] 49 / 2e-06 AT5G58900 302 / 9e-103 Homeodomain-like transcriptional regulator (.1) Lus10040696 [exp] 47 / 1e-05 AT5G58900 306 / 2e-104 Homeodomain-like transcriptional regulator (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.001G147000.1 pacid=42793300 polypeptide=Potri.001G147000.1.p locus=Potri.001G147000 ID=Potri.001G147000.1.v4.1 annot-version=v4.1 ATGGAGTTTTTAGACGAGGACGCCAGACCTCGATTCCTCTTTCAATCTCGCCCGATCCCATCTTCACTAACCAATACCCAAACCCAACAAAAACCATTTA ACAAATTGTTCCTCTTCCTATCAATCTCTCTCTCTTCCCTTTTGCTGCTTCTCTCATTTCTCTACCTCCAAACAGAACCAATCAGATCCCTCCTCTTCTG GGTCTCCATCTCCCTCCTCGTTGGCCCTATCGCTCCCTCTCACCTCACTGGAGGTGACATTCGTGTTGGTGAAGGCCCAATCCTTGAACCCCTAGAACAA GAACCCGAATTTGTAGAAGAAAAACAAGCTAGAAAAAAGAGATCAAAACCGATTAGATCTGAAGAGATTGTGAAGAATCCGATTCAAAATGTGGAAATAA CAAATGGGTTGTCGACTAAAGGGAAAAAGGCTGAAACTTTGGCTAGTGGTGAAAAGGGTTTGGTGAGAAATGAGGGAGAGAAGGAGTGGAATGAAGAGGA TTCGGAGATTCTGAAGAAACAAATGGTGAAGAATCCTGTAGGGAAGCCAAGGAGATGGGAGGTGATTGCGGAGGCATTTAATGGGAGGTATAGAGTGGAG AGTGTGATAAAGAAAGCTAAAGAATTGGGAGAGAAGAAGATGGATGATAGTGATTCCTATGCGAGATTTTTGAAGAACAGGAAGCCACTGGATACAAGAG CTGAAAGTGGGAGTCAAGGATTGGAGAGTGATGAAAGTGGGCAGGAGGTTGGTGGTGGATTGGGGTGGACTACAGGAGAGGATATTGCTTTGTTAAATGC ATTGAAAGTATTTTCTAAGGATGTGGCAATGAGGTGGGAGAAGATTGCAGCTGCTGTTCCGGGGAAGTCAAAGGCAGCTTGTATGAAAAGAGTCACTGAA TTGAAAAAGGATTTTCGGAGCTCGAAAGCTGGTTCTGAAAGTTAG
AA sequence Show only first row Show all	>Potri.001G147000.1 pacid=42793300 polypeptide=Potri.001G147000.1.p locus=Potri.001G147000 ID=Potri.001G147000.1.v4.1 annot-version=v4.1 MEFLDEDARPRFLFQSRPIPSSLTNTQTQQKPFNKLFLFLSISLSSLLLLLSFLYLQTEPIRSLLFWVSISLLVGPIAPSHLTGGDIRVGEGPILEPLEQ EPEFVEEKQARKKRSKPIRSEEIVKNPIQNVEITNGLSTKGKKAETLASGEKGLVRNEGEKEWNEEDSEILKKQMVKNPVGKPRRWEVIAEAFNGRYRVE SVIKKAKELGEKKMDDSDSYARFLKNRKPLDTRAESGSQGLESDESGQEVGGGLGWTTGEDIALLNALKVFSKDVAMRWEKIAAAVPGKSKAACMKRVTE LKKDFRSSKAGSES

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G45420	MYB	maMYB	membrane anchored MYB, Duplica...		Potri.001G147000 [exp]	0	1
AT1G26690			emp24/gp25L/p24 family/GOLD fa...		Potri.018G145544 [exp]	2.00	0.9152
AT2G21870		MGP1	MALE GAMETOPHYTE DEFECTIVE 1, ...		Potri.005G085500 [exp]	2.00	0.9367
					Potri.016G091300 [exp]	3.16	0.9104
AT5G40600		EMB1875	unknown protein		Potri.003G101100 [exp]	3.16	0.8986
AT1G27530			unknown protein		Potri.002G107600 [exp]	3.60	0.8967
AT1G21370			unknown protein		Potri.002G071300 [exp]	4.35	0.8927
AT5G16590		LRR1	Leucine rich repeat protein 1,...		Potri.004G086100 [exp]	6.63	0.9108
AT2G21870		MGP1	MALE GAMETOPHYTE DEFECTIVE 1, ...		Potri.007G079500 [exp]	7.48	0.8955
AT2G15240			UNC-50 family protein (.1)		Potri.009G095900 [exp]	8.30	0.9136
AT1G15370			SNARE-like superfamily protein...		Potri.001G193100 [exp]	10.09	0.9063

Compare expression of checked genes

Potri.001G147000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.