Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	LON.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47040 1461 / 0 LON2 lon protease 2 (.1) AT5G26860 470 / 2e-151 LON1, LON_ARA_ARA lon protease 1 (.1) AT3G05790 447 / 2e-142 LON4 lon protease 4 (.1) AT3G05780 431 / 7e-137 LON3 lon protease 3 (.1) AT4G23940 44 / 0.0008 FtsH extracellular protease family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G086000 [exp] 1627 / 0 AT5G47040 1461 / 0.0 lon protease 2 (.1) Potri.005G017600 [exp] 465 / 4e-149 AT5G26860 1428 / 0.0 lon protease 1 (.1) Potri.013G008900 [exp] 456 / 1e-145 AT5G26860 1467 / 0.0 lon protease 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003009 [exp] 1457 / 0 AT5G47040 1420 / 0.0 lon protease 2 (.1) Lus10011038 [exp] 1454 / 0 AT5G47040 1413 / 0.0 lon protease 2 (.1) Lus10040131 [exp] 1437 / 0 AT5G47040 1400 / 0.0 lon protease 2 (.1) Lus10001084 [exp] 1009 / 0 AT5G47040 994 / 0.0 lon protease 2 (.1) Lus10031414 [exp] 470 / 6e-151 AT5G26860 1402 / 0.0 lon protease 1 (.1) Lus10001083 [exp] 400 / 5e-134 AT5G47040 374 / 9e-125 lon protease 2 (.1) Lus10010919 [exp] 390 / 3e-121 AT5G26860 1275 / 0.0 lon protease 1 (.1) Lus10032404 [exp] 46 / 0.0001 AT4G23940 1267 / 0.0 FtsH extracellular protease family (.1) Lus10023066 [exp] 45 / 0.0004 AT4G23940 1246 / 0.0 FtsH extracellular protease family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00004 [poplar] [flax] AAA ATPase family associated with various cellular activities (AAA) CL0178 [poplar] [flax] PUA PF02190 [poplar] [flax] LON_substr_bdg ATP-dependent protease La (LON) substrate-binding domain CL0329 [poplar] [flax] S5 PF13541 [poplar] [flax] ChlI Subunit ChlI of Mg-chelatase
Representative CDS sequence Show only first row Show all	>Potri.001G148400.4 pacid=42791666 polypeptide=Potri.001G148400.4.p locus=Potri.001G148400 ID=Potri.001G148400.4.v4.1 annot-version=v4.1 ATGGCTGAATCGGTCGAGTTACCGAGTCGATTAGCGATCCTTCCGTTTAGAAACAAGGTGCTTTTACCTGGCGCCATTATTCGCATTCGCTGCACTTCGC CCAGCAGTGTACAATTGGTGGAGCAAGAACTGTGGCAGAGAGAAGAGAAGGGTTTGATTGGGATTTTGCCTGTTAGAGATGCTGCTGCTGCCACGGCGGA GACGGCATCTGTGGGCCCTACTTTATCCCACAGTGCTGGAAGTGATACCAGTGAGAAAAGCTCGAGAACTCCAGCTAGTACATCCTCGGATAATGTCAAG CTTGATGGGAAACACCAGCAAGAAGTTTTTCATTGGCATAACAGGGGAGTGGCTGCTCGTGCTTTGCATCTGTCTAGAGGAGTGGAGAAACCTAGTGGGA GGGTGACATACATAGTTGTTCTTGAAGGTTTGTGCAGATTCAATCTCCATGAACTTAGCACGAGAGGGGCATATTATACTGCGCGGATATCTCCGCTTGA AATGACAAAGGCTGAGCTGGAGCAAGTGGATCAAGATCCTGATTTTGTAGCACTGTCTCGCCACTTCAAAGCAACTGCAATGGAACTCATTTCTGTTCTT GAGCAGAAACAAAAAACTGGTGGGAGGACAAAAGTCCTTTTGGAGACTGTTCCTGTTCACAAATTAGCAGATATATTTGTCGCTAGCTTTGAGATAAGTT TTGAAGAGCAGCTATCTATGTTGGATTCTGTTGATCTGAAGGCAAGGCTGTCAAAAGCTAATGAGCTGGTTGACCAACATTTACAGTCAATACGTGTGGC AGAGAAGATCACGCAAAAGGTTGAAGGACAATTGTCAAAATCACAGAAAGAGTTTCTTCTGCGTCAGCAGATGAGGGCTATAAAAGAGGAGCTTGGTGAC AACGATGATGATGAGGATGATGTGGCTGCCATAGAAAGGAAGATGCAAAGTGCAGGAATGCCTTCAAATATCTGGAAGCATGCCCAAAGGGAGTTGAGGA GGCTTAAGAAGATGCAACCTCAGCAACCTGGTTATAATAGTTCACATGTTTACTTGGAGCTTCTTGCTGATCTGCCCTGGCAGACGGGAAGTGAACAACT TGAATTGGATCTAAAAGCTGCAAAAAAACGTCTTGATAATGACCACTATGGTCTGGTCAAGATCAAGCAACGTATTATTGAATATCTAGCTGTTCGCAAG CTTAAACCAGATGCAAGAGGACCAGTGTTATGCTTTGTTGGTCCACCAGGTGTTGGAAAAACATCTCTGGCTTCGTCTATTGCTGCTGCCTTGGGCAGAA AATTTGTCCGTATATCCCTTGGTGGCATTAAGGACGAGGCTGATATTAGAGGGCACAGGAGAACATACATTGGAAGCATGCCAGGGCGTCTCATAGATGG AATAAAGAGAGTGGGTGTTTGCAATCCTGTGATGCTACTGGATGAGATTGACAAGACAGGTTCTGATGTGCGTGGGGATCCAGCTTCAGCTCTGCTGGAG GTTCTTGATCCTGAACAGAATAAAACATTCAATGATCACTATCTGAATGTTCCATTTGACCTTTCAAAGGTGATTTTTGTGGCAACTGCAAATAAGTTGC AGCCTATTCCTCCACCTCTTTTAGACAGGATGGAGGTCATTGAGCTGCCTGGATACACTCCTGAAGAAAAGCTTAGAATAGCGATGCAGTATTTGATTCC AAGAGTTTTGGATCAACATGGGTTGAGCTCTGAGTTCCTTCAAATTCCAGAGGCTATGGTGGAACTTGTCATTCAGAGATACACAAGGGAGGCAGGTGTA CGCAATCTGGAGAGAAACTTGGCTGCCTTGGCTCGTGCTGCAGCTGTAAGAGTTGCAGAGCAAGAACAAACTGTACCATTGAGCAAAGATATGCATCAGC TTGCTTCACCATTGTTGGAGAACAGACTTTCTGAGGGAGCAGAAGTGGAAATGGAAGTTATACCAATGAACGAAAACAATCATGAGATATCAAACACATT CAGCATTGCTTCACCTTTGGTTGTGGATGAACCTATGCTGGAGAAAGTACTGGGGCCTCCACGGTTTGATGACAGAGAAGCAGCAGAGCGTGTTGCAGCC CCAGGTATATCAGTTGGGCTTGTCTGGACTGCCTTTGGTGGAGAGGTTCAGTTTGTGGAGGCTTCATCAATGGTTGGAAAGGGTGAATTACATCTCACTG GACAACTTGGTGATGTAATTAAAGAATCAGCACAAATAGCACTGACATGGGTACGAGCAAGGGCAACTGATCTTAAGTTGGCAGCTGCTGACGAAACCAA TCTCCTTGAGGATCGAGATGTTCATATACATTTCCCTGCTGGTGCTGTACCTAAGGATGGGCCCTCAGCTGGTGTGACATTGGTAACAGCTCTGGTTTCA CTGTTTAGTCAGAAAAGAGTAAGAGCAGATACAGCTATGACTGGGGAGATGACTTTGAGGGGCCTTGTGCTTCCTGTTGGCGGTATCAAGGATAAGATAT TGGCGGCACACCGCTATGGCATCAAGAGAGTGATTCTGCCAGAGAAAAATATGAAGGATTTGGTTGAAGTACCCGCAGCTGTGCTTGGCAGTCTCGAGAT TTTACTGGCTAAGCGAATGGAAGACGTGTTGGAGCAAGCGTTTGAAGGTGGCTGCCCTTGGAAACAACACTCAAAATTATGA
AA sequence Show only first row Show all	>Potri.001G148400.4 pacid=42791666 polypeptide=Potri.001G148400.4.p locus=Potri.001G148400 ID=Potri.001G148400.4.v4.1 annot-version=v4.1 MAESVELPSRLAILPFRNKVLLPGAIIRIRCTSPSSVQLVEQELWQREEKGLIGILPVRDAAAATAETASVGPTLSHSAGSDTSEKSSRTPASTSSDNVK LDGKHQQEVFHWHNRGVAARALHLSRGVEKPSGRVTYIVVLEGLCRFNLHELSTRGAYYTARISPLEMTKAELEQVDQDPDFVALSRHFKATAMELISVL EQKQKTGGRTKVLLETVPVHKLADIFVASFEISFEEQLSMLDSVDLKARLSKANELVDQHLQSIRVAEKITQKVEGQLSKSQKEFLLRQQMRAIKEELGD NDDDEDDVAAIERKMQSAGMPSNIWKHAQRELRRLKKMQPQQPGYNSSHVYLELLADLPWQTGSEQLELDLKAAKKRLDNDHYGLVKIKQRIIEYLAVRK LKPDARGPVLCFVGPPGVGKTSLASSIAAALGRKFVRISLGGIKDEADIRGHRRTYIGSMPGRLIDGIKRVGVCNPVMLLDEIDKTGSDVRGDPASALLE VLDPEQNKTFNDHYLNVPFDLSKVIFVATANKLQPIPPPLLDRMEVIELPGYTPEEKLRIAMQYLIPRVLDQHGLSSEFLQIPEAMVELVIQRYTREAGV RNLERNLAALARAAAVRVAEQEQTVPLSKDMHQLASPLLENRLSEGAEVEMEVIPMNENNHEISNTFSIASPLVVDEPMLEKVLGPPRFDDREAAERVAA PGISVGLVWTAFGGEVQFVEASSMVGKGELHLTGQLGDVIKESAQIALTWVRARATDLKLAAADETNLLEDRDVHIHFPAGAVPKDGPSAGVTLVTALVS LFSQKRVRADTAMTGEMTLRGLVLPVGGIKDKILAAHRYGIKRVILPEKNMKDLVEVPAAVLGSLEILLAKRMEDVLEQAFEGGCPWKQHSKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G47040		LON2	lon protease 2 (.1)		Potri.001G148400 [exp]	0	1	LON.1
AT1G18270			ketose-bisphosphate aldolase c...		Potri.015G037000 [exp]	1.00	0.9150
AT1G20980	SBP	ATSPL14, SPL1R2...	squamosa promoter binding prot...		Potri.002G002400 [exp]	2.00	0.8695
AT1G34320			Protein of unknown function (D...		Potri.001G305800 [exp]	3.00	0.8751
AT2G25737			Sulfite exporter TauE/SafE fam...		Potri.006G242100 [exp]	3.16	0.8528
AT1G03370			C2 calcium/lipid-binding and G...		Potri.006G003200 [exp]	5.29	0.8792
AT2G38970			Zinc finger (C3HC4-type RING f...		Potri.003G148400 [exp]	7.54	0.8210
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Potri.001G408700 [exp]	9.32	0.8132	MYB.52,MYB219
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Potri.016G120600 [exp]	9.38	0.8444
AT5G50760			SAUR-like auxin-responsive pro...		Potri.003G167400 [exp]	11.31	0.8270	SAUR1
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Potri.005G248500 [exp]	15.19	0.8331	Ptr4CL14

Compare expression of checked genes

Potri.001G148400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.