Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PtrCAT7
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04770 519 / 3e-179 CAT6, ATCAT6 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1) AT3G10600 488 / 4e-167 CAT7 cationic amino acid transporter 7 (.1) AT4G21120 406 / 4e-135 CAT1, AAT1 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) AT2G34960 352 / 2e-114 CAT5 cationic amino acid transporter 5 (.1) AT1G17120 349 / 5e-113 CAT8 cationic amino acid transporter 8 (.1) AT5G36940 206 / 2e-58 CAT3 cationic amino acid transporter 3 (.1) AT1G05940 198 / 8e-56 CAT9 cationic amino acid transporter 9 (.1) AT3G03720 195 / 2e-53 CAT4 cationic amino acid transporter 4 (.1.2) AT1G58030 188 / 8e-52 CAT2 cationic amino acid transporter 2 (.1) AT1G31830 42 / 0.0008 Amino acid permease family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G083700 [exp] 945 / 0 AT5G04770 509 / 7e-176 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1) Potri.010G241000 [exp] 513 / 7e-177 AT3G10600 781 / 0.0 cationic amino acid transporter 7 (.1) Potri.008G017100 [exp] 509 / 4e-175 AT3G10600 778 / 0.0 cationic amino acid transporter 7 (.1) Potri.015G133100 [exp] 395 / 2e-130 AT4G21120 845 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Potri.012G131300 [exp] 388 / 9e-128 AT4G21120 848 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Potri.013G030833 [exp] 387 / 2e-127 AT4G21120 833 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Potri.013G030900 [exp] 387 / 2e-127 AT4G21120 833 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Potri.003G154600 [exp] 371 / 2e-121 AT2G34960 870 / 0.0 cationic amino acid transporter 5 (.1) Potri.001G378500 [exp] 350 / 5e-113 AT1G17120 785 / 0.0 cationic amino acid transporter 8 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000962 [exp] 776 / 0 AT5G04770 543 / 0.0 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1) Lus10040142 [exp] 775 / 0 AT5G04770 547 / 0.0 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1) Lus10023271 [exp] 411 / 5e-137 AT4G21120 902 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Lus10001581 [exp] 392 / 1e-126 AT4G21120 915 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Lus10042817 [exp] 356 / 3e-115 AT4G21120 731 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Lus10005574 [exp] 347 / 8e-112 AT1G17120 811 / 0.0 cationic amino acid transporter 8 (.1) Lus10028195 [exp] 197 / 1e-55 AT1G05940 763 / 0.0 cationic amino acid transporter 9 (.1) Lus10042898 [exp] 195 / 9e-55 AT1G05940 763 / 0.0 cationic amino acid transporter 9 (.1) Lus10020320 [exp] 193 / 9e-54 AT1G58030 912 / 0.0 cationic amino acid transporter 2 (.1) Lus10020322 [exp] 192 / 4e-53 AT1G58030 949 / 0.0 cationic amino acid transporter 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF13906 [poplar] [flax] AA_permease_C C-terminus of AA_permease
Representative CDS sequence Show only first row Show all	>Potri.001G150700.1 pacid=42793231 polypeptide=Potri.001G150700.1.p locus=Potri.001G150700 ID=Potri.001G150700.1.v4.1 annot-version=v4.1 ATGGAAAGCCAAAAAACACTCTCTTCTTCTTTCGCTAGCAATATGGCAACCGTTCAATCCACACCCACAAACATTTCCTTCTCTAACTATCTCCAGTCCC TCTCTCAAACCCCTCACAGGCTTAGAAAAAGAATGCTAGCTACATGGACTCCTGACCAGGAGCTTAACCAAGTTAGGCTGAGGTCTGGTGCAGACATGAT GAGGAAGCTCAAGTGGTATGACTTGATAGCTCTTGGTATAGGAGGGATGCTTGGTGTTGGAGTTTTTGTTACCACTGGCCCTGTAGCCCTTAAAACCTCT GGCCCTTCAGTTTTCATCTCTTATATCATTGCTGGAATATCAGCCCTCTTTTCTTCTTTATGTTACACTGAGTTTTCTGTTCAGATTCCCGTTGCTGGGG GGGCCTTCAGCTATCTTAGAGTGACCTTTGGAGAGTTTATAGGTTATTTTGCTGGGGCAAACATACTAATGGAATATGTATTATCGAATGCTGCGGTTGC AAGAACTTTCACAGAATATCTATGCCATGCTGTGGGGGAGAACCCAAGCTCATGGAGAATTGAAGTGGATGGAGTAGCAGAGGGTTACAATATGTTGGAT TTTCCAGCTGTGGCTCTTATTCTTCTCCTTACTCTCTGTCTTTGCCATAGCACAAAGGAAAGCTCGATATTGAACCTTATTATGACAGTCTTTCATGTGA TTTTCTTCGGATTCATCATAATTGTTGGTTTCTCCAAAGGGAGTGCCAGGAACTTGGTTGAGCCAGGAGGGCTTGCTCCTTTCGGTGTCAAGGGTGTTCT TAATGGAGCAGCTATAGTTTACTTCAGCTATATTGGCTACGACTCGGTTTCAACCATGGCAGAAGAGATCCAAAACCCTGCAAAAAGCCTTCCGGTGGGC ATTTTAGGTTCTGTTCTCATTGTCACCGGGCTATATTGCCTCATGGCCTTATCTTTATGCTTGTTGGTGCCTTTCAATATGATAGATAAAGATGCATCAT TTTCTGTCGCTTTCGAAAAGATCGGGTGGAAGTGGGCAAGCAATGTGGTTGGGGCCGGAGCAAGTTTGGGAATTGTTGCTTCTCTCCTGGTTGCAATGTT AGGCCAAGCTAGATACCTTTGTGTCATTGGAAGGGCCCGGCTTGTGCCTTCTTGGTTCGCCAAGGTGAATCCCTCCACAGGCACCCCTTTGAATGCCACG CTCTTCTTGGGTCTTTGCACAGCTTCAATCGCACTCTTTACCGAACTCAGCATAATTCTTGAAATAATCTCCATCAGCACACTCTTGGTGTTCTACATGG TGGCTAATGCTCTCATCTATCGTCGGTATGTTGTCATTAGCCACAACCCTCCTTCACAAACCCTCTTGTTCCTTGTCCTTCTCTCTTCTACTGCAATTGG CTTCTCTATGTCATGGAAACTTGACGAGCAATGGTGGGCTTTACCAGTACTTGGTGGATTCATGATTGCAATCACAGCTTTCTTTCAATACATGGTGCCT TCCGTTTGCCAACCTAATGAAGAGTGGTCAGTGCCATTCATGCCATGGCCGGCGGTAACATCAATATTCCTTAATGTCTTCCTCATGACCTCACTAAAGG CCAGGTCCTTCCAAAGGTTTGGTATATGGGCATTCTTGATAACCTTGTTTTATGTTCTATATGGTGTTCACTCAACTTATCGAGCTGAAGAGATGGAAGT GGGTGTTGGTGAAATTCCACACCACCCATCAATCCAACAAACCAAGCTAGACATTCAGGTTCTATGA
AA sequence Show only first row Show all	>Potri.001G150700.1 pacid=42793231 polypeptide=Potri.001G150700.1.p locus=Potri.001G150700 ID=Potri.001G150700.1.v4.1 annot-version=v4.1 MESQKTLSSSFASNMATVQSTPTNISFSNYLQSLSQTPHRLRKRMLATWTPDQELNQVRLRSGADMMRKLKWYDLIALGIGGMLGVGVFVTTGPVALKTS GPSVFISYIIAGISALFSSLCYTEFSVQIPVAGGAFSYLRVTFGEFIGYFAGANILMEYVLSNAAVARTFTEYLCHAVGENPSSWRIEVDGVAEGYNMLD FPAVALILLLTLCLCHSTKESSILNLIMTVFHVIFFGFIIIVGFSKGSARNLVEPGGLAPFGVKGVLNGAAIVYFSYIGYDSVSTMAEEIQNPAKSLPVG ILGSVLIVTGLYCLMALSLCLLVPFNMIDKDASFSVAFEKIGWKWASNVVGAGASLGIVASLLVAMLGQARYLCVIGRARLVPSWFAKVNPSTGTPLNAT LFLGLCTASIALFTELSIILEIISISTLLVFYMVANALIYRRYVVISHNPPSQTLLFLVLLSSTAIGFSMSWKLDEQWWALPVLGGFMIAITAFFQYMVP SVCQPNEEWSVPFMPWPAVTSIFLNVFLMTSLKARSFQRFGIWAFLITLFYVLYGVHSTYRAEEMEVGVGEIPHHPSIQQTKLDIQVL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G04770		CAT6, ATCAT6	ARABIDOPSIS THALIANA CATIONIC ...		Potri.001G150700 [exp]	0	1	PtrCAT7
AT1G49320		ATUSPL1	unknown seed protein like 1 (....		Potri.009G114300 [exp]	2.23	0.8711
AT1G49310			unknown protein		Potri.009G114400 [exp]	2.44	0.8261
AT4G21620			glycine-rich protein (.1.2)		Potri.004G036500 [exp]	4.00	0.8378
AT1G13600	bZIP	ATBZIP58	basic leucine-zipper 58 (.1)		Potri.008G113400 [exp]	4.24	0.8184
AT3G46130	MYB	PFG3, ATMYB111 ...	myb domain protein 48 (.1.2.3....		Potri.009G027300 [exp]	8.94	0.8197	MYB111.1,MYB023
AT4G04630			Protein of unknown function, D...		Potri.004G014000 [exp]	9.16	0.8244
					Potri.006G250550 [exp]	10.39	0.7847
AT2G43970			RNA-binding protein (.1.2)		Potri.017G007400 [exp]	14.49	0.7527
AT1G07175			unknown protein		Potri.001G277600 [exp]	16.24	0.7312
AT4G31330			Protein of unknown function, D...		Potri.006G278000 [exp]	16.73	0.7887

Compare expression of checked genes

Potri.001G150700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.