Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	RAP15
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72570 389 / 2e-131 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT3G20840 352 / 7e-115 AP2_ERF PLT1 PLETHORA 1, Integrase-type DNA-binding superfamily protein (.1) AT4G37750 347 / 4e-113 AP2_ERF DRG, CKC1, ANT DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) AT5G57390 346 / 1e-112 AP2_ERF PLT5, EMK, CHO1, AIL5 PLETHORA 5, EMBRYOMAKER, CHOTTO 1, AINTEGUMENTA-like 5 (.1) AT1G51190 344 / 7e-112 AP2_ERF PLT2 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) AT5G17430 337 / 6e-109 AP2_ERF BBM BABY BOOM, Integrase-type DNA-binding superfamily protein (.1) AT5G65510 311 / 7e-100 AP2_ERF PLT7, AIL7 PLETHORA 7, AINTEGUMENTA-like 7 (.1) AT5G10510 301 / 3e-95 AP2_ERF PLT3, AIL6 PLETHORA 3, AINTEGUMENTA-like 6 (.1.2.3) AT3G54320 235 / 2e-71 AP2_ERF ATWRI1, ASML1, WRI1 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) AT1G79700 214 / 4e-65 AP2_ERF Integrase-type DNA-binding superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G064700 [exp] 792 / 0 AT1G72570 350 / 1e-114 Integrase-type DNA-binding superfamily protein (.1) Potri.002G114800 [exp] 387 / 2e-127 AT4G37750 459 / 5e-155 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Potri.005G148400 [exp] 378 / 1e-123 AT4G37750 399 / 7e-132 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Potri.014G012200 [exp] 375 / 3e-122 AT4G37750 405 / 8e-134 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Potri.007G007400 [exp] 366 / 4e-119 AT4G37750 412 / 9e-137 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Potri.010G181000 [exp] 362 / 6e-117 AT5G17430 399 / 2e-130 BABY BOOM, Integrase-type DNA-binding superfamily protein (.1) Potri.008G076400 [exp] 356 / 2e-114 AT5G17430 405 / 4e-133 BABY BOOM, Integrase-type DNA-binding superfamily protein (.1) Potri.003G205700 [exp] 346 / 8e-113 AT1G51190 635 / 0.0 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) Potri.006G167700 [exp] 345 / 3e-112 AT5G57390 432 / 2e-146 PLETHORA 5, EMBRYOMAKER, CHOTTO 1, AINTEGUMENTA-like 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037670 [exp] 381 / 5e-129 AT1G72570 355 / 1e-120 Integrase-type DNA-binding superfamily protein (.1) Lus10007719 [exp] 352 / 1e-114 AT4G37750 429 / 1e-144 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Lus10018655 [exp] 350 / 1e-113 AT4G37750 430 / 9e-145 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Lus10031831 [exp] 345 / 4e-113 AT3G20840 580 / 0.0 PLETHORA 1, Integrase-type DNA-binding superfamily protein (.1) Lus10031260 [exp] 343 / 6e-111 AT1G51190 667 / 0.0 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) Lus10012728 [exp] 291 / 1e-91 AT5G10510 495 / 1e-170 PLETHORA 3, AINTEGUMENTA-like 6 (.1.2.3) Lus10002657 [exp] 266 / 4e-82 AT5G10510 467 / 5e-160 PLETHORA 3, AINTEGUMENTA-like 6 (.1.2.3) Lus10036719 [exp] 246 / 3e-75 AT3G54320 288 / 3e-93 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10037209 [exp] 244 / 1e-74 AT3G54320 286 / 1e-92 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10013268 [exp] 234 / 2e-72 AT3G54320 275 / 3e-90 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [poplar] [flax] MBD-like PF00847 [poplar] [flax] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Potri.001G169500.1 pacid=42788966 polypeptide=Potri.001G169500.1.p locus=Potri.001G169500 ID=Potri.001G169500.1.v4.1 annot-version=v4.1 ATGAGTAATTGGTTGGGGTTTTCTCTGAGTCCGCACTTGAGAGTTGATGAAGACTTCGGTAGAGAAGATCAAGCTGCTAGTTTCTCTGTCATGCCTTTGC TATCTGATGGATCTCTTTGTGTTGCTGATCCCTTTAGACGGCCATCTAATGGTACCCCAGACTGGAGATATGAAAACACTATGGATGAAGGTAGAATAAG TGAAGATGGTCCAAAGCTTGAGGATTTCTTGGGGTGTTACTCAAACTCACCTTCTGATGAGACCGAAGTTCACTGTCAGCAAGAAGATCACCACATTAAT CAAAACCATGCCAATAGAATCAATCCCAATCTAGCACCAAGCTTCAACACCAATAAAGATATAGAAACTGGGAAGAATAGTCTCACAAGCCATTCTTCTT TCATCCAAAGTTACCATTTCAATGACAATGCGCAAACCTTAATCCCTAGTGACAGCCTTCAGCACTGTGATCCAAACCCTAGCCATAGCCGTAGCCATAG CAACAGCCATAACCATAACCAAGAAACTGGCATGTACCATGTGCCTTTTGAGAGTGCTAGTTCTTTTTCTGGGTTCAAGTCATGGCTTAGGCAGACGTCT ACACCATTTTCTTCTAGTGGGGAGTCTCCAAATGAAGCAAACAATTGCAATTTTCAATCATTATCACTCACAGTGAGTCCTAGTTCTCAAAATGGATTAG TTGCTATATCTCCATTGCAAGTGGTCGATAACAGTATAAGGCCAGTTGCAAAATCACTTGCTAAAAAACCAGTTTCTCGTAAATCTATAGAGACATTTGG ACAAAGAACCTCACAATATAGAGGTGTAACAAGGCATAGATGGACTGGGAGATATGAGGCCCATTTGTGGGATAATAGTTGCAGGAAAGAAGGACAAACA AGGAAAGGAAGGCAAGTTTACCTCGGTGGGTATGATAAGGAGGAAAAGGCAGCAAGGGCTTATGATTTAGCTGCTTTGAAGTATTGGGGTCCAACAACGC ATATTAATTTCCCTGTGGGAACTTATGAAAAAGAGCTTGAAGAGATGGAGCACATGACCAGACAAGAATTTGTAGCCAATTTGAGAAGGAAAAGTAGTGG GTTTTCAAGAGGAGCTTCTGTGTACAGAGGTGTGACAAGGCATCATCAACATGGAAGATGGCAAGCTAGAATAGGAAGGGTTGCTGGAAACAAGGACTTG TACCTTGGAACATTTAGCACACAAGAGGAAGCTGCCGAGGCCTACGACATTGCAGCAATTAAATTTAGGGGTGCCAGTGCTGTTACAAATTTTGGTATAA GTAGGTATGATGTAAAGAGAATTTGCTCAAGCTCTACACTCATTGCTAGTGACCTAGCTAAACGTTCATCAAAAGACTCGACCCCGACGACTCTCGAGGA TTACAATTCTTGTGCTTCATCATCATCGATATCTCCTCAGCCCCTGCTTGCCATAGCAGGCTGTGAGGCCTCCGATGAATTGCCTGACATGGCGTGGAGT GCAAATAGATGGGAAAGTCAACAGCAACAAAGTGTTAACAATAATAGCAATGATTCAACACTGATGGCTTCAAGTAGCAGGAATTCCTCCAATGCTGCTA GTCCAAAATGCTCCGTTGGTTTAACCAGTGATTTTGGCCATGGAGGCGGAAGCTACTCTTAG
AA sequence Show only first row Show all	>Potri.001G169500.1 pacid=42788966 polypeptide=Potri.001G169500.1.p locus=Potri.001G169500 ID=Potri.001G169500.1.v4.1 annot-version=v4.1 MSNWLGFSLSPHLRVDEDFGREDQAASFSVMPLLSDGSLCVADPFRRPSNGTPDWRYENTMDEGRISEDGPKLEDFLGCYSNSPSDETEVHCQQEDHHIN QNHANRINPNLAPSFNTNKDIETGKNSLTSHSSFIQSYHFNDNAQTLIPSDSLQHCDPNPSHSRSHSNSHNHNQETGMYHVPFESASSFSGFKSWLRQTS TPFSSSGESPNEANNCNFQSLSLTVSPSSQNGLVAISPLQVVDNSIRPVAKSLAKKPVSRKSIETFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQT RKGRQVYLGGYDKEEKAARAYDLAALKYWGPTTHINFPVGTYEKELEEMEHMTRQEFVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDL YLGTFSTQEEAAEAYDIAAIKFRGASAVTNFGISRYDVKRICSSSTLIASDLAKRSSKDSTPTTLEDYNSCASSSSISPQPLLAIAGCEASDELPDMAWS ANRWESQQQQSVNNNSNDSTLMASSSRNSSNAASPKCSVGLTSDFGHGGGSYS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G72570	AP2_ERF		Integrase-type DNA-binding sup...		Potri.001G169500 [exp]	0	1	RAP15
AT5G10510	AP2_ERF	PLT3, AIL6	PLETHORA 3, AINTEGUMENTA-like ...		Potri.007G011600 [exp]	1.00	0.8759
AT1G05500		SYT5, NTMCTYPE2...	synaptotagmin 5, ARABIDOPSIS T...		Potri.006G063900 [exp]	1.73	0.8233
AT5G13140			Pollen Ole e 1 allergen and ex...		Potri.001G060500 [exp]	6.24	0.7757
					Potri.004G021901 [exp]	7.74	0.8097
AT1G03700			Uncharacterised protein family...		Potri.013G131700 [exp]	8.48	0.7761
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Potri.001G177600 [exp]	12.64	0.7851
AT5G16690		ORC3, ATORC3	origin recognition complex sub...		Potri.013G077200 [exp]	18.16	0.7582
AT5G13520			peptidase M1 family protein (....		Potri.008G045900 [exp]	19.44	0.7640
AT5G66560			Phototropic-responsive NPH3 fa...		Potri.005G130700 [exp]	20.00	0.7203
AT2G30200		EMB3147	EMBRYO DEFECTIVE 3147, catalyt...		Potri.001G282600 [exp]	25.09	0.6955

Compare expression of checked genes

Potri.001G169500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.