Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14750 167 / 1e-52 MYB WER1, WER, AtMYB66 WEREWOLF 1, WEREWOLF, myb domain protein 66 (.1) AT5G40330 166 / 7e-52 MYB ATMYBRTF, ATMYB23 myb domain protein 23 (.1) AT3G13540 164 / 7e-51 MYB ATMYB5, ATM2 myb domain protein 5 (.1) AT4G09460 162 / 4e-50 MYB ATMYB6, ATMYB8 myb domain protein 6 (.1) AT5G35550 162 / 4e-50 MYB ATTT2, TT2, AtMYB123 TRANSPARENT TESTA 2, MYB DOMAIN PROTEIN 123, Duplicated homeodomain-like superfamily protein (.1) AT1G22640 162 / 7e-50 MYB AtMYB3 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) AT4G38620 161 / 2e-49 MYB AtMYB4 myb domain protein 4 (.1) AT3G27920 159 / 4e-49 MYB GL1, ATMYB0, AtGL1 GLABRA 1, myb domain protein 0 (.1) AT4G34990 160 / 5e-49 MYB ATMYB32 myb domain protein 32 (.1) AT5G52600 158 / 5e-49 MYB AtMYB82 myb domain protein 82 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G064600 [exp] 290 / 5e-101 AT5G14750 166 / 5e-52 WEREWOLF 1, WEREWOLF, myb domain protein 66 (.1) Potri.006G221200 [exp] 221 / 4e-74 AT3G13540 169 / 6e-53 myb domain protein 5 (.1) Potri.018G049000 [exp] 214 / 6e-71 AT5G14750 167 / 1e-52 WEREWOLF 1, WEREWOLF, myb domain protein 66 (.1) Potri.003G079100 [exp] 191 / 2e-62 AT3G13540 168 / 1e-52 myb domain protein 5 (.1) Potri.017G128900 [exp] 169 / 5e-53 AT4G09460 222 / 6e-73 myb domain protein 6 (.1) Potri.004G088100 [exp] 169 / 1e-52 AT4G09460 227 / 5e-75 myb domain protein 6 (.1) Potri.001G005100 [exp] 171 / 2e-52 AT3G13540 247 / 1e-81 myb domain protein 5 (.1) Potri.003G219900 [exp] 171 / 2e-52 AT3G13540 243 / 1e-79 myb domain protein 5 (.1) Potri.006G221800 [exp] 169 / 2e-52 AT4G38620 197 / 5e-62 myb domain protein 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033438 [exp] 179 / 8e-56 AT1G22640 194 / 2e-61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) Lus10000470 [exp] 178 / 1e-55 AT2G16720 196 / 2e-61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Lus10039173 [exp] 167 / 1e-51 AT3G13540 244 / 3e-81 myb domain protein 5 (.1) Lus10013762 [exp] 163 / 5e-50 AT3G13540 241 / 1e-79 myb domain protein 5 (.1) Lus10000411 [exp] 163 / 5e-50 AT4G09460 300 / 5e-103 myb domain protein 6 (.1) Lus10016948 [exp] 162 / 9e-50 AT4G09460 301 / 1e-103 myb domain protein 6 (.1) Lus10009448 [exp] 162 / 1e-49 AT4G09460 290 / 2e-99 myb domain protein 6 (.1) Lus10028435 [exp] 159 / 4e-49 AT2G16720 246 / 2e-82 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Lus10041888 [exp] 159 / 5e-49 AT4G38620 245 / 5e-82 myb domain protein 4 (.1) Lus10001548 [exp] 160 / 8e-49 AT4G09460 291 / 2e-99 myb domain protein 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.001G169600.1 pacid=42788721 polypeptide=Potri.001G169600.1.p locus=Potri.001G169600 ID=Potri.001G169600.1.v4.1 annot-version=v4.1 ATGGCTACTATGAAAAAAGAGTCGGTTAAGACCATGGAAACCATGCCCAACAAGGGAGCATGGACAGCTGAAGAAGACAGGAAACTGGCTGAGGTTATTG CAACTCATGGTGCCAAAAGATGGAGGACAATCGCATCCAAAGCAGCTCTCAATAGGTGTGGTAAGAGTTGCAGGCTAAGATGGTTGAATTATTTAAGACC AAACATCAAGAGAGGCAATATATCTGACCAAGAAGAGGACCTCATACTTAGGCTTCATAAACTACTAGGAAACAGGTGGTCACTGATTGCCGGAAGATTA CCGGGTCGAACAGATAATGAGATCAAGAACTACTGGAATTCTCATTTGAGCAAGAAAATAAACAAAAAAGGGAAACAGATTGAAGCTTCAAATAGAGAAT GCCAGAAAATTGAGAAAAAGACAGTAGAGATCAGTTTGGAGTTGAAAGAAGATAATAAGCCACATAATGGAAGTGAAGAAGGCTCAAATGTAAATTTTAA TATAGACGATCTCTTTGATTTCACCGATGAAGATACTTTGAACATGGAATGGATGAGCCGATTCCTTGAAATGGACGAGGCTTAA
AA sequence Show only first row Show all	>Potri.001G169600.1 pacid=42788721 polypeptide=Potri.001G169600.1.p locus=Potri.001G169600 ID=Potri.001G169600.1.v4.1 annot-version=v4.1 MATMKKESVKTMETMPNKGAWTAEEDRKLAEVIATHGAKRWRTIASKAALNRCGKSCRLRWLNYLRPNIKRGNISDQEEDLILRLHKLLGNRWSLIAGRL PGRTDNEIKNYWNSHLSKKINKKGKQIEASNRECQKIEKKTVEISLELKEDNKPHNGSEEGSNVNFNIDDLFDFTDEDTLNMEWMSRFLEMDEA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G14750	MYB	WER1, WER, AtMY...	WEREWOLF 1, WEREWOLF, myb doma...		Potri.001G169600 [exp]	0	1
AT2G41480			Peroxidase superfamily protein...		Potri.018G131600 [exp]	1.41	0.8379
AT2G41130	bHLH	bHLH106	basic helix-loop-helix (bHLH) ...		Potri.016G035400 [exp]	4.00	0.8217
AT4G19810		ChiC	class V chitinase, Glycosyl hy...		Potri.018G112000 [exp]	5.19	0.8155
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Potri.005G143800 [exp]	9.21	0.7919	CYP81S7,CYP81.2
					Potri.003G195000 [exp]	11.83	0.7949
AT3G08040		ATFRD3, MAN1, F...	MANGANESE ACCUMULATOR 1, FERRI...		Potri.009G061100 [exp]	12.96	0.7668	Pt-FRD3.1
AT4G19810		ChiC	class V chitinase, Glycosyl hy...		Potri.018G112100 [exp]	21.16	0.7744
AT3G17980		AtC2	Arabidopsis thaliana C2 domain...		Potri.008G131500 [exp]	23.00	0.7456
AT2G37130			Peroxidase superfamily protein...		Potri.006G129900 [exp]	23.66	0.7266
					Potri.001G029000 [exp]	29.29	0.7861

Compare expression of checked genes

Potri.001G169600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.