Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08470 1259 / 0 EMB2817, PEX1 EMBRYO DEFECTIVE 2817, peroxisome 1 (.1) AT5G03340 265 / 9e-75 ATPase, AAA-type, CDC48 protein (.1) AT3G53230 262 / 7e-74 ATPase, AAA-type, CDC48 protein (.1) AT3G09840 251 / 3e-70 ATCDC48, CDC48A, CDC48 cell division cycle 48 (.1) AT2G03670 233 / 2e-65 CDC48B cell division cycle 48B (.1) AT3G01610 233 / 6e-64 CDC48C, EMB1354 embryo defective 1354, cell division cycle 48C (.1) AT1G03000 228 / 1e-61 PEX6 peroxin 6 (.1) AT3G56690 219 / 2e-58 CIP111 Cam interacting protein 111 (.1) AT2G30950 166 / 2e-42 FTSH2, VAR2 VARIEGATED 2, FtsH extracellular protease family (.1) AT5G19990 160 / 3e-42 ATSUG1, RPT6A regulatory particle triple-A ATPase 6A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G088200 [exp] 271 / 6e-77 AT5G03340 1459 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.017G108200 [exp] 267 / 1e-75 AT5G03340 1311 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.015G080600 [exp] 263 / 4e-74 AT5G03340 1455 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.016G091600 [exp] 261 / 2e-73 AT3G53230 1484 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.006G125500 [exp] 259 / 5e-73 AT5G03340 1496 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.001G128700 [exp] 255 / 6e-73 AT2G03670 766 / 0.0 cell division cycle 48B (.1) Potri.013G151600 [exp] 239 / 5e-66 AT3G01610 747 / 0.0 embryo defective 1354, cell division cycle 48C (.1) Potri.014G133000 [exp] 228 / 1e-61 AT1G03000 1165 / 0.0 peroxin 6 (.1) Potri.006G035000 [exp] 204 / 2e-53 AT3G56690 1080 / 0.0 Cam interacting protein 111 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023123 [exp] 1370 / 0 AT5G08470 1163 / 0.0 EMBRYO DEFECTIVE 2817, peroxisome 1 (.1) Lus10011485 [exp] 1333 / 0 AT5G08470 1150 / 0.0 EMBRYO DEFECTIVE 2817, peroxisome 1 (.1) Lus10037385 [exp] 265 / 8e-75 AT5G03340 1501 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10021441 [exp] 261 / 1e-73 AT5G03340 1529 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10021442 [exp] 249 / 2e-69 AT5G03340 1520 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10016123 [exp] 249 / 3e-69 AT5G03340 1526 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10016124 [exp] 246 / 2e-68 AT5G03340 1511 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10018033 [exp] 235 / 7e-66 AT2G03670 813 / 0.0 cell division cycle 48B (.1) Lus10042029 [exp] 233 / 2e-64 AT2G03670 826 / 0.0 cell division cycle 48B (.1) Lus10001402 [exp] 226 / 1e-63 AT3G53230 803 / 0.0 ATPase, AAA-type, CDC48 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00004 [poplar] [flax] AAA ATPase family associated with various cellular activities (AAA) CL0402 [poplar] [flax] Cdc48_2-like PF09262 [poplar] [flax] PEX-1N Peroxisome biogenesis factor 1, N-terminal
Representative CDS sequence Show only first row Show all	>Potri.001G174100.4 pacid=42789853 polypeptide=Potri.001G174100.4.p locus=Potri.001G174100 ID=Potri.001G174100.4.v4.1 annot-version=v4.1 ATGGAATTCCAAGTGAAGCACGTGGGCGGTATAGAGAACTGCTTTGTCTCTCTTCCTATCAACCTAATCCAAATCCTTGAATCCACTCGCCGCCCTGCTC CTCTCCCTCCACTTCTCACTCTTGAACTACGCTCTCCGTCCGCCAACCGTCACTGGACCGTCGCTTGGTCCGGTGCTACCTCCTCCTCTTCCTCCATCGA GGTTGCGCAACAATTTGCAGAGTGCATTTCATTGCCTGATCATATTAGTGTTCAAGTCAGGGCTGTTTCTAATGTTGTCAACGCGACTTTAGTAACCATT GAACCTCATAGTGAGGATGATTGGGAAGTTTTAGAACTTAACGCTGAACAAGCCGAGGCTTCCATATTAAAGCAGGTGAGGATTGTCAATGAAGGAATGA GATTTCCTTTGTGGTTACATGGCGGCGCTGTCATTACATTCCTCGTGGTTTCAACATCTCCCAAGAGAGCGGTGGTTCAACTTGTTCCAGGAGCTGAAGT TGCAGTTGCTCCAAAAAGACGCGAAAAGGTTGTTAATAAACAAGATGCCACTGTGCAGTCTTATAATAAAGAAAGTAATATGGCAAAGGCCCTGTTGCGT CTTCAAGATTTAGACAGAAGATTGTTTCACAATTGTGATGTCAAAGGTGTTGAGCTGGCCACCGCACCCACTTGTGTTGCTTATATGCATCCTGAAACTG CTCAAATGTTTTCTTTAGATTCTCTGCAGTTGGTCACACTTGTTCCAAGATTGTCATCAAAAGATGGTGTTAAGACTCCTGATAGCGATGCATTGAGAGT GAAAAGTGCCTCTCCCAAGGAAGCTAACAATGGAACTTTAACTGACAAGAAAGAATTTCATCAAGCAATTGTCCGCCTTTTGTTTTCCGATTCAGTGGCT AAAGGACATGTAATGATAGCTCGATCCCTTCGTTTGTATTTGAGAGCAGGGCTGCACTCATGGATTTATTTAAAGGGATGGATTACTGATTTGAAGGACA TTGCATCACTTTCACTTTCTCCCTGTTACTTTAAGATGCCTGGACAAGATAAGCCCGTTGAGAAGCCTGGTCTAGAACTGATTGACATCGATAAACTTCA GAAACCAAGAAAAACTAGCTTGGACACCTATATGGATGCTGTAGATTGGTCAATCCACGACAAAATTTTTGCTTCTCTGTCACAAGACTTTCCTTCTAAA CAGGAAGAAGAGACTGGTTATCTGCCTGATAATAAAAAGGGATTGAGAAGACTTCTTCAAGCATGGTATCGTGCACAGCTTGATGCTATTGCTTCAACTT CTGGGGTGGAAGTTAATTCATTAATTGTAGGTAAAGAAACTTTACTTCACTTTGAAGTGAAAGGATATGACTTTGGGATTGATAGGAAGACCAGGGAAAA GGCATCTTCTTATTCAAATGGATCTCTAAAGAACAGAAATAAGACTGGTGGAACGCAACTTGAATTCTTGTATGTACTGAGTATTCCTGAGGAATCTGTG CACGGAATAAAGGTTAATGCATACAGTCTTGCCTTCAATGAAAGAAAAAAGGATAATCTTGGAGTAGGGTTGTTTGAAAGGCTGAAACTAGGTGGCCCTG TGTCCTTCTATTCTTTGAAGGAAAGTAACTCTTTTACAGGGTTTAGTTCAAATGCTTCATCTTTGAGCTGGATGGGGACAACTGCTTCTGATGTGATTAA CAGATTGATGGTGTTGTTATATCCTCCTTATAGCACGTGGTTTAATACATACAATCTTCCTCTGCCTGGGCACATTCTAATATATGGACCTCACGGTTCT GGAAAAACCACTTTAGCAAGAGCTGTTGCAAAATCCCTTGAAGAGCGTGAAGACCTCTTTGCCCACATAGTTTTTGTAAGCTGCTCTGGACTCACTTTAG ATAAAGCCTCGGCCATTCGTCAAACCCTTTCTGCTTCCATATCTGAAGCATTAGATCATGCACCTTCCCTTGTCATCTTTGATGATCTGGATACCATTGT GTCAGCCTCTTCTGACTCTGAAGGATCACAACCTTCAACATCGGTTGTTGCGCTGACAAAATTTCTCTCAGATTTTATAGATGAATATGGGGAAAAAAGG AAGAGCACATGTGGAATTGGCCCGATTGCCTTTATAGCCTCTGTGCAGACTCTGGAGAATATTCCACAGTCATTGAGCTCTTCAGGAAGGTTTGACTTCC ATGTGCAACTGCCTGCTCCTGCTGCCTCAGAACGCGAGGCTATATTGAAGCATGAAATCCGGAGGCGTTCCTTACTGTGTTCTGACGACATTTTGCTTGA TGTGGCTTCCAAATGTGATGGATATGATGCATATGATCTGGAAATATTGGTAGATAGAACTGTACATGCTGCCATTGGCCGATTTTTGCCTTCTCATTCT ACTTTTGAAAAGCATGACATACCCACGTTATTCAAGGACGACTTCTCTAGGGCAATGCACGAGTTCCTTCCAGTTTCTATGCGTGACATCACTAAATCTG CCCCTGAAGGTGGCCGTTCTGGGTGGGATGATGTTGGTGGTCTTAGTGACATAAGGAATGCTATTAGAGAGATGATTGAATTGCCTTCAAAGTTCCCGAA TATCTTTGTCCAATCTCCTTTACGCTTAAGGTCAAATGTTCTCTTATACGGTCCTCCTGGTTGTGGCAAAACTCATATTGTTGGTGCTGCTGCTGCTGCC TGTTCTCTTCGATTCATATCAGTGAAAGGACCTGAGCTGTTGAACAAATACATTGGTGCTTCTGAACAAGCTGTTCGTGATATTTTCTCAAAAGCTGCAG CTGCAGCACCATGTATTCTATTTTTTGATGAATTTGATTCCATTGCCCCAAAACGAGGGCATGACAATACTGGAGTAACTGATCGTGTTGTTAATCAATT TCTAACTGAATTAGATGGCGTTGAAGTTTTGACTGGAGTTTTTGTTTTTGCTGCAACAAGTAGACCAGATCTACTTGATGCTGCGTTGTTGAGACCTGGT CGGTTAGATCGCCTTCTTTTCTGTGATTTTCCATCTCGGAAGGAGAGGCTGGAAATCCTAGCAGTTCTTTCTAGAAAGCTGCCTCTTGCCAATGATGTTG ACATAGAAACAATAGCTGGTATGACAGAAGGATTTAGCGGTGCTGACCTACAAGCTCTTCTCTCAGATGCGCAGCTTGCGGCAGTTCATGAACATTTAAG CAGTGCAGACATGGGCGACCCTGGTAAAATGCCAGTCATAACTGATGATCTTTTAAAGACCACTACTTCCAAAGCAAGACCATCGATATCTGAAGCTGAG AAGCAAAGACTCTTTGGTATTTATAGCCAATTCTTGGATTCAAAGCGATCTGTTGCTTCACAGTCAAGGGATACAAAAGGCAAAAGAGCTACTCTAGCAT AA
AA sequence Show only first row Show all	>Potri.001G174100.4 pacid=42789853 polypeptide=Potri.001G174100.4.p locus=Potri.001G174100 ID=Potri.001G174100.4.v4.1 annot-version=v4.1 MEFQVKHVGGIENCFVSLPINLIQILESTRRPAPLPPLLTLELRSPSANRHWTVAWSGATSSSSSIEVAQQFAECISLPDHISVQVRAVSNVVNATLVTI EPHSEDDWEVLELNAEQAEASILKQVRIVNEGMRFPLWLHGGAVITFLVVSTSPKRAVVQLVPGAEVAVAPKRREKVVNKQDATVQSYNKESNMAKALLR LQDLDRRLFHNCDVKGVELATAPTCVAYMHPETAQMFSLDSLQLVTLVPRLSSKDGVKTPDSDALRVKSASPKEANNGTLTDKKEFHQAIVRLLFSDSVA KGHVMIARSLRLYLRAGLHSWIYLKGWITDLKDIASLSLSPCYFKMPGQDKPVEKPGLELIDIDKLQKPRKTSLDTYMDAVDWSIHDKIFASLSQDFPSK QEEETGYLPDNKKGLRRLLQAWYRAQLDAIASTSGVEVNSLIVGKETLLHFEVKGYDFGIDRKTREKASSYSNGSLKNRNKTGGTQLEFLYVLSIPEESV HGIKVNAYSLAFNERKKDNLGVGLFERLKLGGPVSFYSLKESNSFTGFSSNASSLSWMGTTASDVINRLMVLLYPPYSTWFNTYNLPLPGHILIYGPHGS GKTTLARAVAKSLEEREDLFAHIVFVSCSGLTLDKASAIRQTLSASISEALDHAPSLVIFDDLDTIVSASSDSEGSQPSTSVVALTKFLSDFIDEYGEKR KSTCGIGPIAFIASVQTLENIPQSLSSSGRFDFHVQLPAPAASEREAILKHEIRRRSLLCSDDILLDVASKCDGYDAYDLEILVDRTVHAAIGRFLPSHS TFEKHDIPTLFKDDFSRAMHEFLPVSMRDITKSAPEGGRSGWDDVGGLSDIRNAIREMIELPSKFPNIFVQSPLRLRSNVLLYGPPGCGKTHIVGAAAAA CSLRFISVKGPELLNKYIGASEQAVRDIFSKAAAAAPCILFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPG RLDRLLFCDFPSRKERLEILAVLSRKLPLANDVDIETIAGMTEGFSGADLQALLSDAQLAAVHEHLSSADMGDPGKMPVITDDLLKTTTSKARPSISEAE KQRLFGIYSQFLDSKRSVASQSRDTKGKRATLA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G08470		EMB2817, PEX1	EMBRYO DEFECTIVE 2817, peroxis...		Potri.001G174100 [exp]	0	1
AT4G24560		UBP16	ubiquitin-specific protease 16...		Potri.002G104800 [exp]	3.74	0.8067	UBP16.2
AT3G17450			hAT dimerisation domain-contai...		Potri.014G114100 [exp]	8.66	0.8327
AT1G77800			PHD finger family protein (.1....		Potri.002G089400 [exp]	8.88	0.8374
AT2G47070	SBP	SPL1	squamosa promoter binding prot...		Potri.010G154000 [exp]	9.74	0.8294	Pt-SPL1.4
AT3G22380		TIC	time for coffee (.1.2)		Potri.002G052300 [exp]	11.95	0.8169
AT1G55250		HUB2, HISTONEMO...	histone mono-ubiquitination 2 ...		Potri.001G008800 [exp]	12.00	0.8189
AT1G01790		ATKEA1, KEA1	K+ efflux antiporter 1, K+ EFF...		Potri.014G080800 [exp]	12.32	0.7798
AT2G33435			RNA-binding (RRM/RBD/RNP motif...		Potri.010G068400 [exp]	14.14	0.8204
AT3G52250	MYB		Duplicated homeodomain-like su...		Potri.010G220000 [exp]	14.49	0.8329
AT2G35800		SAMTL	S-adenosyl methionine transpor...		Potri.008G043700 [exp]	15.19	0.7962

Compare expression of checked genes

Potri.001G174100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.