Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29130 831 / 0 LAC2, ATLAC2 laccase 2 (.1) AT5G60020 825 / 0 LAC17, ATLAC17 laccase 17 (.1) AT2G38080 622 / 0 ATLMCO4, IRX12, LAC4 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) AT5G03260 581 / 0 LAC11 laccase 11 (.1) AT5G01190 577 / 0 LAC10 laccase 10 (.1) AT5G58910 565 / 0 LAC16 laccase 16 (.1) AT1G18140 561 / 0 LAC1, ATLAC1 laccase 1 (.1) AT5G05390 544 / 0 LAC12 laccase 12 (.1) AT2G40370 532 / 0 LAC5 laccase 5 (.1) AT2G30210 523 / 0 LAC3 laccase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G156800 [exp] 1135 / 0 AT2G29130 831 / 0.0 laccase 2 (.1) Potri.009G156600 [exp] 1135 / 0 AT2G29130 831 / 0.0 laccase 2 (.1) Potri.009G034500 [exp] 1093 / 0 AT2G29130 844 / 0.0 laccase 2 (.1) Potri.001G341600 [exp] 877 / 0 AT5G60020 896 / 0.0 laccase 17 (.1) Potri.001G054600 [exp] 865 / 0 AT5G60020 905 / 0.0 laccase 17 (.1) Potri.001G401300 [exp] 865 / 0 AT5G60020 904 / 0.0 laccase 17 (.1) Potri.006G087100 [exp] 851 / 0 AT5G60020 802 / 0.0 laccase 17 (.1) Potri.011G120300 [exp] 844 / 0 AT5G60020 875 / 0.0 laccase 17 (.1) Potri.006G087500 [exp] 842 / 0 AT5G60020 806 / 0.0 laccase 17 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019122 [exp] 848 / 0 AT5G60020 938 / 0.0 laccase 17 (.1) Lus10034439 [exp] 847 / 0 AT5G60020 943 / 0.0 laccase 17 (.1) Lus10034614 [exp] 843 / 0 AT5G60020 934 / 0.0 laccase 17 (.1) Lus10024378 [exp] 829 / 0 AT5G60020 853 / 0.0 laccase 17 (.1) Lus10010850 [exp] 812 / 0 AT5G60020 856 / 0.0 laccase 17 (.1) Lus10035517 [exp] 655 / 0 AT2G38080 907 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Lus10027782 [exp] 640 / 0 AT2G38080 887 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Lus10017175 [exp] 622 / 0 AT2G38080 875 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Lus10026512 [exp] 607 / 0 AT5G03260 919 / 0.0 laccase 11 (.1) Lus10040697 [exp] 607 / 0 AT2G38080 828 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [poplar] [flax] CU_oxidase PF00394 [poplar] [flax] Cu-oxidase Multicopper oxidase CL0026 [poplar] [flax] CU_oxidase PF07731 [poplar] [flax] Cu-oxidase_2 Multicopper oxidase CL0026 [poplar] [flax] CU_oxidase PF07732 [poplar] [flax] Cu-oxidase_3 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Potri.001G184300.1 pacid=42788232 polypeptide=Potri.001G184300.1.p locus=Potri.001G184300 ID=Potri.001G184300.1.v4.1 annot-version=v4.1 ATGGGTGCTTCAGTCCCTGCATCGCCAGAAATTCTTCTGACAATTCTACTATTTGCTATGAGCTGCCTCTGGGCCTTTCCTGAGGTTGCCGGTGCAAAGC ATGCAGGCATTACGAGGCACTACAAGTTCAACATAAAACTGAAAAATGTCACCCGCTTGTGCCACACTAAGAGCATGGTGACTGTTAATGGGAAGTTCCC GGGGCCTCGCGTAGTTGCCAGAGAAGGTGACCGTTTAGTGGTGAAGGTGGTCAATCATGTTCCAAATAATATCAGCATCCATTGGCATGGAATTCGACAA CTTCAAAGTGGATGGGCAGATGGACCAGCATACATCACGCAATGCCCTATTCAAACAAACCAGACTTATGTTTACAACTTCACTGTTACAGGACAAAGAG GAACTCTCTTCTGGCATGCTCACCTCTCATGGCTTAGAGCTTCTGTCTATGGACCCCTTATCATCTTACCTAAGCGCAACGTTTCTTACCCATTTGCCAA ACCCCACAAGGAAGTGACTATCATGTTGGGAGAGTGGTTCAATGCTGATACTGAGGCAGTGATTAGCCAGGCTTTACAGACAGGAGGGGGGCCAAATGTC TCTGAAGCCTACACCTTTAATGGACTTCCAGGTCCACTGTACAATTGCTCAGAAAATAATACATACAAGCTAAAGGTGAAACCAGGAAAGACATATCTTC TCCGATTGATCAATGCTGCACTCAATGATGACCTCTTTTTTAGCATTGCAAACCACACCTTCACCGTTGTTGAAGTGGATGCTACTTACGCGAAGCCTTT TGAGACCAACCTCTTGGTTATAACAGCAGGACAGACCACAAATGTTCTTCTGAAGACCAAATCCATTGCCCCCAATGCATCATTCTACATGTTAGCAAGA CCATACTTTACTGGCCAAGGCACATTTGACAACACAACTGTTGCAGGGATACTCGAGTATGAAACTTCTTCAAATTCGACAGCTTTTAAATCAACCCTTC CTCCGATTAATGCTACAAATGTCGTCGCGAATTTCACAAGAAAACTTCGCAGTTTAGCTAATTCTCGATTCCCAGTTAATGTCCCTCAAACAGTAGACAA GAAATTTTTCTTCACAGTTGGTCTAGGAAACAGCCCGTGCCCAAAAAACCAGACATGTCAAGGACCTAATGGCACGAAATTTGCAGCTTCTGTTAACAAC ATCTCCATGGCTCTCCCTTCATCAGCACTCCTTCAATCCTATTTTTTCAAAAAATCAAATGGGGTTTACACCTCTGATTTCCCAAGCTTTCCTCTCCATC CATTCAACTACACAGGGACCCCACCAAATAATACTCTTGTGACCAATGGTAACAAGCTTGTAGTGGTACCATTTAACACAAGTGTGGAGGTAGTGATGCA GGGCACTCGAATTTTCGGTGCTGAGAGCCACCCTCTCCATCTTCATGGCTTCAATTTCTATGTTGTTGGAGAAGGGTTTGGAAATTTTGATCCAAATAAT GACCCCAAGAACTTTAACCTTGTTGATCCTGTTGAAAGGAACACTGTTGGTGTGCCTACTGCTGGTTGGGTGGCAATTCGTTTTTATGCAGACAATCCAG GAGTATGGTTTATGCACTGCCACTTTGATGTCCATTTGAGCTGGGGGTTAAGGATGGCATGGATTGTCTTGGATGGAACACTTCCTAGTCAGAAGCTCCC TCCTCCACCATCTGATCTTCCCAAGTGTTGA
AA sequence Show only first row Show all	>Potri.001G184300.1 pacid=42788232 polypeptide=Potri.001G184300.1.p locus=Potri.001G184300 ID=Potri.001G184300.1.v4.1 annot-version=v4.1 MGASVPASPEILLTILLFAMSCLWAFPEVAGAKHAGITRHYKFNIKLKNVTRLCHTKSMVTVNGKFPGPRVVAREGDRLVVKVVNHVPNNISIHWHGIRQ LQSGWADGPAYITQCPIQTNQTYVYNFTVTGQRGTLFWHAHLSWLRASVYGPLIILPKRNVSYPFAKPHKEVTIMLGEWFNADTEAVISQALQTGGGPNV SEAYTFNGLPGPLYNCSENNTYKLKVKPGKTYLLRLINAALNDDLFFSIANHTFTVVEVDATYAKPFETNLLVITAGQTTNVLLKTKSIAPNASFYMLAR PYFTGQGTFDNTTVAGILEYETSSNSTAFKSTLPPINATNVVANFTRKLRSLANSRFPVNVPQTVDKKFFFTVGLGNSPCPKNQTCQGPNGTKFAASVNN ISMALPSSALLQSYFFKKSNGVYTSDFPSFPLHPFNYTGTPPNNTLVTNGNKLVVVPFNTSVEVVMQGTRIFGAESHPLHLHGFNFYVVGEGFGNFDPNN DPKNFNLVDPVERNTVGVPTAGWVAIRFYADNPGVWFMHCHFDVHLSWGLRMAWIVLDGTLPSQKLPPPPSDLPKC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G29130		LAC2, ATLAC2	laccase 2 (.1)		Potri.001G184300 [exp]	0	1
AT2G29130		LAC2, ATLAC2	laccase 2 (.1)		Potri.009G156600 [exp]	1.41	0.9579
AT2G29130		LAC2, ATLAC2	laccase 2 (.1)		Potri.009G156800 [exp]	2.00	0.9407
AT5G05390		LAC12	laccase 12 (.1)		Potri.010G183500 [exp]	6.00	0.7373
AT2G29130		LAC2, ATLAC2	laccase 2 (.1)		Potri.009G034500 [exp]	7.48	0.7278
AT5G46220			Protein of unknown function (D...		Potri.018G107800 [exp]	14.14	0.7237
AT5G14230			unknown protein		Potri.001G333600 [exp]	20.19	0.7141
AT1G57560	MYB	ATMYB50	myb domain protein 50 (.1)		Potri.010G004300 [exp]	21.49	0.6904
AT1G22460			O-fucosyltransferase family pr...		Potri.002G100400 [exp]	25.41	0.6485
AT3G62660		GATL7	galacturonosyltransferase-like...		Potri.002G200200 [exp]	35.66	0.6675
AT5G47820		FRA1	FRAGILE FIBER 1, P-loop contai...		Potri.002G123500 [exp]	36.08	0.6588

Compare expression of checked genes

Potri.001G184300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.