Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13890 256 / 1e-82 MYB ATMYB26, MS35 MALE STERILE 35, myb domain protein 26 (.1.2) AT1G09540 221 / 7e-69 MYB AtMYB61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, myb domain protein 61 (.1) AT5G26660 216 / 2e-67 MYB ATMYB4, ATMYB86 myb domain protein 86 (.1) AT1G57560 214 / 4e-67 MYB ATMYB50 myb domain protein 50 (.1) AT1G63910 215 / 1e-66 MYB AtMYB103 myb domain protein 103 (.1) AT4G01680 211 / 1e-66 MYB ATMYB55 myb domain protein 55 (.1.2.3) AT3G12720 211 / 6e-66 MYB ATMYB67, AtY53 myb domain protein 67 (.1) AT3G08500 189 / 5e-57 MYB ATMYB83 myb domain protein 83 (.1) AT5G12870 185 / 4e-56 MYB ATMYB46 myb domain protein 46 (.1) AT4G12350 181 / 2e-54 MYB ATMYB42 myb domain protein 42 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G155700 [exp] 218 / 3e-68 AT3G12720 240 / 1e-77 myb domain protein 67 (.1) Potri.008G081600 [exp] 216 / 3e-67 AT3G12720 262 / 2e-86 myb domain protein 67 (.1) Potri.001G099800 [exp] 214 / 3e-67 AT1G63910 319 / 3e-108 myb domain protein 103 (.1) Potri.003G132000 [exp] 213 / 9e-67 AT1G63910 317 / 2e-107 myb domain protein 103 (.1) Potri.012G084100 [exp] 215 / 1e-66 AT5G26660 253 / 1e-81 myb domain protein 86 (.1) Potri.015G082700 [exp] 213 / 4e-66 AT1G57560 254 / 2e-82 myb domain protein 50 (.1) Potri.013G001000 [exp] 215 / 8e-66 AT1G09540 382 / 1e-130 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, myb domain protein 61 (.1) Potri.014G111200 [exp] 213 / 8e-65 AT4G01680 282 / 3e-93 myb domain protein 55 (.1.2.3) Potri.005G001600 [exp] 212 / 9e-65 AT1G09540 376 / 1e-128 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, myb domain protein 61 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015608 [exp] 253 / 2e-81 AT3G13890 249 / 8e-80 MALE STERILE 35, myb domain protein 26 (.1.2) Lus10038022 [exp] 209 / 2e-63 AT4G01680 273 / 8e-90 myb domain protein 55 (.1.2.3) Lus10024669 [exp] 210 / 3e-63 AT1G63910 260 / 2e-82 myb domain protein 103 (.1) Lus10038395 [exp] 197 / 7e-61 AT3G12720 233 / 2e-75 myb domain protein 67 (.1) Lus10032298 [exp] 203 / 2e-60 AT1G63910 260 / 2e-82 myb domain protein 103 (.1) Lus10001226 [exp] 196 / 3e-60 AT3G12720 231 / 8e-75 myb domain protein 67 (.1) Lus10037625 [exp] 194 / 2e-58 AT3G13890 192 / 5e-58 MALE STERILE 35, myb domain protein 26 (.1.2) Lus10031281 [exp] 186 / 4e-56 AT3G08500 228 / 1e-72 myb domain protein 83 (.1) Lus10039610 [exp] 187 / 8e-56 AT5G12870 219 / 3e-69 myb domain protein 46 (.1) Lus10002559 [exp] 186 / 1e-55 AT5G12870 225 / 7e-72 myb domain protein 46 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.001G197000.1 pacid=42788684 polypeptide=Potri.001G197000.1.p locus=Potri.001G197000 ID=Potri.001G197000.1.v4.1 annot-version=v4.1 ATGGGACATCACTCATGCTGTAATAAACAGAAAGTTAAGAGAGGTCTATGGTCGCCTGAGGAAGATGAGAAGCTCGCCAACTACATTTCGACATATGGTC ATGGTTGCTGGAGCTCAGTCCCTAAACTTGCAGGTCTGCAGAGATGTGGAAAGAGCTGCAGACTAAGATGGATAAATTATCTAAGACCTGACCTAAAACG TGGAAGCTTCTCTCCTCAAGAAGCAGCACTTATCATCGAACTCCATAGTATTCTAGGCAACAGATGGGCACAGATAGCTAAGCACCTACCAGGAAGAACA GATAATGAGGTGAAGAACTTTTGGAATTCAAGTATCAAGAAGAAGCTCATTTCTCATGATCAAGTTCCTGCTTTAGCCGCCTTCACTGATTATATTGTCC ACAATTCGAGCGTTCCTGAGGAAGCTTTCCTCTCTCTGAATGCAAACCCTAATCTCATCATGACTGCTCATCATCATGATCATCACCAGCTCTACCTCCC CTCACCAACCTCAATTCTACAAAGTTTTGGCCATGGAGATTTCAAACTCAACCAACCCAATAATTACAATGTTGATTTGCCTCATTTGTCACCTGCAACT CCCTTAATCCCACCCCCTCTAAATGATAATTCATCTTCATTTGACCCAGGGTGGTCATTGCCTTATCTACCTCAACACCTCGATCAAAACCAAGAAGATC ATCATCAAAGTTTGAGCAATGGGGCAATTCCAGTGCATTATATTGGAGAGAAAGTTGTTACTCATGATCAGAGTACGATTAATGCAACAATGTCTTATGA CAATCAATCTATGATGGTGTCTATGATGCCAAAACTTTTTGAGATCATTGAAGGAAATGTTTGCCGCATGCCACCTTCATCTGAATCACAGAACACAGTT CACGACCCACTTGCTAGACTTTCAAGTCTCCCATCTGGGCCGTATCCAGTACATGAAGTGGCAACCAGTCAATTGGAGTCCATCGATGCAATCATGTCAT CACTGTCAGCATACTCCTCCTCCTCATCATCATCATCCTTATCACCATTTTCAAGTAGTCAATTTGTTGCAAACCCCCATCTTCCTTCTAGCTGGGATGC CTAG
AA sequence Show only first row Show all	>Potri.001G197000.1 pacid=42788684 polypeptide=Potri.001G197000.1.p locus=Potri.001G197000 ID=Potri.001G197000.1.v4.1 annot-version=v4.1 MGHHSCCNKQKVKRGLWSPEEDEKLANYISTYGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELHSILGNRWAQIAKHLPGRT DNEVKNFWNSSIKKKLISHDQVPALAAFTDYIVHNSSVPEEAFLSLNANPNLIMTAHHHDHHQLYLPSPTSILQSFGHGDFKLNQPNNYNVDLPHLSPAT PLIPPPLNDNSSSFDPGWSLPYLPQHLDQNQEDHHQSLSNGAIPVHYIGEKVVTHDQSTINATMSYDNQSMMVSMMPKLFEIIEGNVCRMPPSSESQNTV HDPLARLSSLPSGPYPVHEVATSQLESIDAIMSSLSAYSSSSSSSSLSPFSSSQFVANPHLPSSWDA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G13890	MYB	ATMYB26, MS35	MALE STERILE 35, myb domain pr...		Potri.001G197000 [exp]	0	1
AT4G38210		ATHEXPALPHA1.23...	EXPANSIN 20, expansin A20 (.1)		Potri.004G208300 [exp]	7.61	0.7450
AT2G28070		ABCG3	ATP-binding cassette G3, ABC-2...		Potri.004G214000 [exp]	10.00	0.6953
AT3G54070			Ankyrin repeat family protein ...		Potri.011G015801 [exp]	13.74	0.6926
AT5G45580	GARP		Homeodomain-like superfamily p...		Potri.001G133400 [exp]	13.85	0.6935
AT5G13290		SOL2, CRN	SUPPRESSOR OF LLP1 2, CORYNE, ...		Potri.003G163300 [exp]	15.23	0.7231
AT3G18670			Ankyrin repeat family protein ...		Potri.011G016300 [exp]	21.42	0.6768
AT3G18670			Ankyrin repeat family protein ...		Potri.006G281600 [exp]	23.83	0.6919
					Potri.014G013200 [exp]	25.49	0.6654
AT4G17980	NAC	ANAC071	NAC domain containing protein ...		Potri.014G076100 [exp]	26.45	0.6424
AT3G14250			RING/U-box superfamily protein...		Potri.001G037200 [exp]	26.72	0.6529

Compare expression of checked genes

Potri.001G197000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.