Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80510 561 / 0 Transmembrane amino acid transporter family protein (.1) AT3G30390 268 / 1e-84 Transmembrane amino acid transporter family protein (.1.2) AT5G38820 256 / 8e-80 Transmembrane amino acid transporter family protein (.1) AT3G56200 194 / 1e-56 Transmembrane amino acid transporter family protein (.1) AT2G40420 189 / 2e-54 Transmembrane amino acid transporter family protein (.1) AT5G15240 43 / 0.0004 Transmembrane amino acid transporter family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G011900 [exp] 656 / 0 AT1G80510 611 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.017G106300 [exp] 266 / 1e-83 AT3G30390 625 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Potri.004G111400 [exp] 253 / 8e-79 AT3G30390 643 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Potri.002G114300 [exp] 251 / 4e-78 AT3G30390 516 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Potri.010G181800 [exp] 242 / 2e-74 AT3G56200 511 / 3e-180 Transmembrane amino acid transporter family protein (.1) Potri.010G136601 [exp] 108 / 3e-26 AT3G30390 315 / 4e-105 Transmembrane amino acid transporter family protein (.1.2) Potri.008G075500 [exp] 59 / 2e-10 AT3G56200 101 / 6e-26 Transmembrane amino acid transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034093 [exp] 555 / 0 AT1G80510 658 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10003054 [exp] 553 / 0 AT1G80510 663 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10031964 [exp] 266 / 8e-84 AT3G30390 689 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10035140 [exp] 264 / 7e-83 AT3G30390 691 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10034353 [exp] 259 / 3e-81 AT3G30390 655 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10036845 [exp] 257 / 2e-80 AT3G30390 561 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10007716 [exp] 257 / 3e-80 AT3G30390 514 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10005099 [exp] 256 / 1e-79 AT3G30390 646 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10018652 [exp] 247 / 5e-76 AT5G38820 499 / 3e-175 Transmembrane amino acid transporter family protein (.1) Lus10042864 [exp] 222 / 7e-67 AT3G56200 534 / 0.0 Transmembrane amino acid transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF03222 [poplar] [flax] Trp_Tyr_perm Tryptophan/tyrosine permease family
Representative CDS sequence Show only first row Show all	>Potri.001G204400.1 pacid=42793095 polypeptide=Potri.001G204400.1.p locus=Potri.001G204400 ID=Potri.001G204400.1.v4.1 annot-version=v4.1 ATGGATAGCAATTACACAACCATATCAAATAACTCATACGTAGATTTACAAATACGTGATGATCCTCAAAACCCATTACCCCAAAGAAAAACCCACATCA AATTGCACCCTCTTCATGAAGTTGAGAATTTTATTGGCAATGGTCAAAGTCTTGACGACGACGATCAAGATGATTTTGACATTGATGATTATCCACTCGT TTCGAAAAAGAAAACAAGTAAAGATTCTGGTATTTATGGTGCCGTTTTTAATCTCACTACTTCCATTATTGGGGCTGGGATTATGGCCTTACCTGCTACA ATGAAGGTTCTTGGATTGGTTTTGGGATTTATTTTGATAATAGTCATGGGTATTTTGTCTGAAATTAGTGTTGAATTGTTAGTTAGGTTTTCAGTTCGGT TTAAGGCTTCTTCTTATGGTGAAGTTGTTCGGTTTGCCTTGGGGAAACCTGCTAAGGTTTTGTCTGAAATTTGCATCATTGTGAACAATGCCGGTGTTTT GGTTGTGTATTTGATAATTATAGGTGATGTCATGTCAGGATCGCTCCATCATGTCGGGGTTTTCGACCAGTGGTTAGGAAATGGGTTTTGGGATCATAGG AAGTTGGTGATTTTGGTTGTTGTGGTGGTTTTTTTAGCACCCCTTTGTGCATTGGATAAGATTGATTCTTTGAGCTTGACTTCGGCTGCTTCTGTGGCTC TGGCTGTGGTTTTTGTTGTGGTATGTTTTATTGTTGCTTTTGTTAAGCTCATTGAAGGGAAAATTGAGTCCCCTAGGATGACTCCTGATTTTGGTTCGAA GCAGGCTATTTTGGATTTGCTTGTGGTGATTCCGATCATGACAAACGCTTATGTTTGCCACTTCAATGTTCAGCCTATATACAACGAGCTTGAAGGACGA TCACCTCAGAAAATGAACAGGGTGGGCAGGATCACCACTGTTCTTTGCGTTGTGGTTTATGCTTCAACTGCGATATCAGGTTATTTACTTTTTGGCAAGG ATACCGAATCTGATGTGTTAACCAATTTTGACAAGGACCTTGGAATTCGTTTTAGCTCTGCCTTGAATTATATTGTTAGGATTGGCTACATTCTTCATTT GGTTCTCGTTTTTCCTGTTGTTCATTTCTCTTTAAGACAAACAGTGGATGTCTTGGTGTTTGAGGGATCAGCTCCGCTTTCAGAGAGTAGGAAGAGGTCT TTGGCCTTAACAGCTGTTCTATTGGCACTGATTTATTTTGGGTCTACTATGATTCCAAATATTTGGACTGCTTTCAAATTTACAGGGGCGACAACGGCAG TTTCATTAGGTTTTATATTCCCATCTCTTGTTGCATTGAGGTTAAGTCAGAGTGGGGAGGATTTAAACGCTGGAGAGAAGTTTTTGTCATGGCTGATGTT AATATTGGCTATAATAGTTAGTATTGTTGGAGTGATTGGCAATATTTATAGCCTCAAAAGCGATTCTGAATGA
AA sequence Show only first row Show all	>Potri.001G204400.1 pacid=42793095 polypeptide=Potri.001G204400.1.p locus=Potri.001G204400 ID=Potri.001G204400.1.v4.1 annot-version=v4.1 MDSNYTTISNNSYVDLQIRDDPQNPLPQRKTHIKLHPLHEVENFIGNGQSLDDDDQDDFDIDDYPLVSKKKTSKDSGIYGAVFNLTTSIIGAGIMALPAT MKVLGLVLGFILIIVMGILSEISVELLVRFSVRFKASSYGEVVRFALGKPAKVLSEICIIVNNAGVLVVYLIIIGDVMSGSLHHVGVFDQWLGNGFWDHR KLVILVVVVVFLAPLCALDKIDSLSLTSAASVALAVVFVVVCFIVAFVKLIEGKIESPRMTPDFGSKQAILDLLVVIPIMTNAYVCHFNVQPIYNELEGR SPQKMNRVGRITTVLCVVVYASTAISGYLLFGKDTESDVLTNFDKDLGIRFSSALNYIVRIGYILHLVLVFPVVHFSLRQTVDVLVFEGSAPLSESRKRS LALTAVLLALIYFGSTMIPNIWTAFKFTGATTAVSLGFIFPSLVALRLSQSGEDLNAGEKFLSWLMLILAIIVSIVGVIGNIYSLKSDSE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G80510			Transmembrane amino acid trans...		Potri.001G204400 [exp]	0	1
AT3G02350		GAUT9	galacturonosyltransferase 9 (....		Potri.017G106800 [exp]	8.42	0.8910
AT2G26920			Ubiquitin-associated/translati...		Potri.003G191600 [exp]	11.31	0.8401
AT3G19460			Reticulon family protein (.1.2...		Potri.001G300400 [exp]	13.56	0.8883
AT1G16300		GAPCP-2	glyceraldehyde-3-phosphate deh...		Potri.008G083900 [exp]	24.31	0.8798	GAPDH1.4
AT1G21170		SEC5B	Exocyst complex component SEC5...		Potri.002G068900 [exp]	31.49	0.8585	Pt-SEC5.2
AT3G25140		QUA1, GAUT8	QUASIMODO 1, GALACTURONOSYLTRA...		Potri.002G246500 [exp]	32.17	0.8524
AT5G19320		RANGAP2	RAN GTPase activating protein ...		Potri.010G091100 [exp]	34.64	0.8639	Pt-RANGAP2.1
AT1G01050		ATPPA1	pyrophosphorylase 1 (.1)		Potri.014G107100 [exp]	38.65	0.8494
AT3G44330			unknown protein		Potri.009G160400 [exp]	39.00	0.8541
AT1G19360		RRA3	reduced residual arabinose 3, ...		Potri.009G113300 [exp]	41.59	0.8576

Compare expression of checked genes

Potri.001G204400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.