Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22010 1117 / 0 ATRFC1 replication factor C 1, replication factor C1 (.1) AT1G77620 81 / 3e-15 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G04730 79 / 1e-14 CTF18 CHROMOSOME TRANSMISSION FIDELITY 18, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G63160 73 / 2e-13 EMB2811, RFC2 EMBRYO DEFECTIVE 2811, replication factor C 2 (.1) AT1G21690 72 / 2e-13 RFC4, EMB1968 replication factor C 4, embryo defective 1968, ATPase family associated with various cellular activities (AAA) AT1G77470 62 / 7e-10 EMB2810, RFC5, RFC3 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G050300 [exp] 83 / 7e-16 AT1G04730 1058 / 0.0 CHROMOSOME TRANSMISSION FIDELITY 18, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G123200 [exp] 68 / 1e-11 AT1G63160 587 / 0.0 EMBRYO DEFECTIVE 2811, replication factor C 2 (.1) Potri.002G081200 [exp] 63 / 4e-10 AT1G77470 577 / 0.0 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1) Potri.002G084700 [exp] 64 / 5e-10 AT1G77620 634 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G181300 [exp] 60 / 3e-09 AT1G21690 551 / 0.0 replication factor C 4, embryo defective 1968, ATPase family associated with various cellular activities (AAA) Potri.005G177000 [exp] 58 / 4e-08 AT1G77620 642 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013372 [exp] 1153 / 0 AT5G22010 1128 / 0.0 replication factor C 1, replication factor C1 (.1) Lus10043134 [exp] 82 / 2e-15 AT1G04730 946 / 0.0 CHROMOSOME TRANSMISSION FIDELITY 18, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10024504 [exp] 69 / 6e-12 AT1G63160 615 / 0.0 EMBRYO DEFECTIVE 2811, replication factor C 2 (.1) Lus10035108 [exp] 70 / 1e-11 AT1G77620 536 / 4e-171 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10008003 [exp] 67 / 2e-11 AT1G63160 605 / 0.0 EMBRYO DEFECTIVE 2811, replication factor C 2 (.1) Lus10028543 [exp] 64 / 1e-10 AT1G21690 563 / 0.0 replication factor C 4, embryo defective 1968, ATPase family associated with various cellular activities (AAA) Lus10025689 [exp] 61 / 2e-09 AT1G77470 568 / 0.0 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1) Lus10018144 [exp] 61 / 3e-09 AT1G77470 564 / 0.0 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1) Lus10032615 [exp] 52 / 2e-06 AT1G04730 237 / 3e-70 CHROMOSOME TRANSMISSION FIDELITY 18, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10008450 [exp] 44 / 5e-05 AT5G22010 63 / 1e-12 replication factor C 1, replication factor C1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00004 [poplar] [flax] AAA ATPase family associated with various cellular activities (AAA) CL0459 [poplar] [flax] BRCT-like PF00533 [poplar] [flax] BRCT BRCA1 C Terminus (BRCT) domain CL0459 [poplar] [flax] PF08519 [poplar] [flax] RFC1 Replication factor RFC1 C terminal domain
Representative CDS sequence Show only first row Show all	>Potri.001G213900.10 pacid=42790160 polypeptide=Potri.001G213900.10.p locus=Potri.001G213900 ID=Potri.001G213900.10.v4.1 annot-version=v4.1 ATGCAACGAGATATTCGAAAATGGTTTATGAAGGCACACGATAAAGGCAATGACAATGCTGCTACCAATGCTGAGAAGAAACCTCCTCCAACTGAGCCGA AGACCGAAACACCTGTGTGTGGAGGACAAGAAGGTTCAGGAAGGAGGAAAAATAGCAAGTATTTTGCGGCAAATAAACAGAAGCAAAAAGAGGATAAAGA AATAGAGGATCTTCCTGCTAAGAGGAAAGCTCAAAATGATGGTGTCCAATCTGTGAAACCCCCACCTTCTAAAAAGGTTCACAAAGTTGATGATGAAGAA GAAGATGATGATTTTTCCTTGCCCAAGAAGAAGAATGATGCTTCTCCTAGTAAGAAATTGAAGAGCAGTTCAGGCAGGGGAATTGCTCAGAAACCTGTAC ATGTTAACGAAAGTGATGAAGATGATGTGAAGGATACTGAATCTCCTCTGAAATCTGGTGGCAGAGGTCGTGGTGGTAGGGGTGTGTCTGGGGCACCATC TGGTGGAAGGGGCAGAGGTGGTGGACGGGGAGGATTTATGAACTTTGGTGAGAAGAAAGATCCTCCACACAAAGGAGAAAAGGAAGTCCCTGAAGGTGCT CCTAATTGTTTAGCTGGTTTAACTTTTGTGATTAGTGGAACGCTTGACAGTTTGGAAAGAGAAGAGGCAGAAGACTTGATTAAAAGGCATGGAGGTCGTG TTACTGGATCTGTCAGCAAGAAAACGAGTTATCTTTTATGTGATGAGGATATTGAGGGACGGAAATCTTCAAAAGCCAAAGAACTTGGCACACCTTTTCT TACCGAGGATGGGCTGTTTGATAAGATCCTCTCCTCAAAGAATTCAAAAGCCCCGGCACGAGAAGACTCAAAGGTGTCTGTGGAGAAAGTCACATCTCTG CCAAAGAAAAGTCCTCAGAAAGCAGACTTGAAGAGTAGCTCTTTGATGTCAAATGCAACCCACAAAGATTTGGGTGCAGGTTCCCAGCAAGCAAAGCAGA AAGATCAAGCTATACAACGCTCATCCCTAATATGGACAGAAAAATATAGGCCAAAGGTTCCAAATGAGATGATAGGAAATCCATCACTGGTTACTCAGCT CCATAATTGGTTGAAGAACTGGAATGAGCAGTTCCATGACACTGGAAACAAGGGAAAGGGCAAAAAACAAAACGATTCTACCGCAAAAAAAGCTGTTCTA TTGAGTGGACCACCTGGAATAGGGAAAACAACATCAGCAAAGCTGGTCTCTAAAATGCTCGGTTTCCAGGCAATCGAGGTAAATGCCAGTGACAATCGTG GGAAGGCAGATGCCAAGATTTTTAAAGGAATCAGTGGAAGCAATGCAAATTGCATAAAGGAACTTATCAGCAATGAAGCTCTGGGTTTTGAGATGGATAG GTCAAAGCATCTGAAAACAGTTTTGATCATGGATGAGGTAGATGGAATGTCTGCTGGGGATAGAGGTGGAGTTGCTGATCTTATTGCTAGTATAAAGATT TCCAAAATTCCTATCATCTGCATCTGTAATGACCGTTATAGTCAGAAGCTAAAAAGTCTTGTGAACTATTGCTTGCTTCTCAGTTTCCGGAAGCCTACAA AACAACAGATGGCAAAGAGGTTAACTCAAGTTGCAAATGCAGAAGGCCTTCAAGTTAATGAGATTGCACTTGAGGAGCTTGCAGAAAGGGTGAATGGAGA TATGCGCATGGCATTAAACCAATTACAATATATGAGCCTCTCAATGTCAGTCATTAATTATGATGATGTAAGACAGCGCCTTCAAGGAAGTGCAAAAGAT GAAGATATTTCACCATTCACCGCTGTGGATAAGCTGTTTGGCTTTAGTGGAGGAAAGCTGAGAATGGATGAGCGGATTGACCTCAGTATGAGTGATCCTG ACTTGGTCCCTCTTCTTATACAGGAAAACTACATTAATTATAGGCCAAGTTCAATTGGTAAAGATGACAATGGGATGAAACGTATGAGCTTGATTGCACG TGCTGCTGAGTCTATTGCCGATGGAGATATAATAAATGTGCAGATCCGAAGATATCGACAGTGGCAGCTCTCTCAAACTGGTTCTCTGTCATCCTGTATC ATTCCTGCTGCATTGTTGCATGGATCAAGGGAGACACTTGAACAGGGTGAACGGAATTTTAATAGATTTGGTGGGTGGCTGGGAAAGAATTCAACAGCGG GCAAAAATTCGAGGCTTTTGGAGGATCTGCATGTTCATCTCCTTGCTTCTCGTGAATCTAATATGGGGAGGGAGACACTTCGACTTGACTACCTTACAGT TCTTCTGAAACAATTGACAGATCCTCTTCGGGTGCTGCCTAAGGATGAAGCTGTTGAGAAGGTTGTGGAGTTCATGAATGTATACTCAATAAGTCAGGAG GATATGGATACCATTGTGGAGTTATCAAAATTTCAGGGGCATGGGAATCCATTGGACGGCATACCATCAACTGTCAAAGCGGCTCTGACAAGAGCATATA AAGAAGAAAGAAAATCAAGGATGGTACGAGCTGCAGATTTAGTCACACTTCCTGGAAAGAAGAAGGCCCCTAAGAAGCGTGTTGCAGCTATTCTAGAACC TTCTGATGATGGTCTAAGAGAGGAAAATGGTGACGCGGTGGCTGAAAGTGAAGAAGAAAACTCATCTGACACAGATGATATGGAAGGAACTGGTAATGGC GAGAAGCTGCAGTCTGAGCTTCAGAGTTTAAATTCAAAAGGAATCCAAGTAGAGGTGGAACTGAAGTGCAGAAAGGAAAGTTCAAAGTCTAAGAAGACCC CTACAGGAAGAGGAAAAGGTGGGTCTGCATCTACTGAAAAAAAACCAGCGGGCAGAGGGCGAGGTGGTTCTGGTTCCTCGGAGAAACCTGGAGCTAAGAG AAAGAGATGA
AA sequence Show only first row Show all	>Potri.001G213900.10 pacid=42790160 polypeptide=Potri.001G213900.10.p locus=Potri.001G213900 ID=Potri.001G213900.10.v4.1 annot-version=v4.1 MQRDIRKWFMKAHDKGNDNAATNAEKKPPPTEPKTETPVCGGQEGSGRRKNSKYFAANKQKQKEDKEIEDLPAKRKAQNDGVQSVKPPPSKKVHKVDDEE EDDDFSLPKKKNDASPSKKLKSSSGRGIAQKPVHVNESDEDDVKDTESPLKSGGRGRGGRGVSGAPSGGRGRGGGRGGFMNFGEKKDPPHKGEKEVPEGA PNCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTSYLLCDEDIEGRKSSKAKELGTPFLTEDGLFDKILSSKNSKAPAREDSKVSVEKVTSL PKKSPQKADLKSSSLMSNATHKDLGAGSQQAKQKDQAIQRSSLIWTEKYRPKVPNEMIGNPSLVTQLHNWLKNWNEQFHDTGNKGKGKKQNDSTAKKAVL LSGPPGIGKTTSAKLVSKMLGFQAIEVNASDNRGKADAKIFKGISGSNANCIKELISNEALGFEMDRSKHLKTVLIMDEVDGMSAGDRGGVADLIASIKI SKIPIICICNDRYSQKLKSLVNYCLLLSFRKPTKQQMAKRLTQVANAEGLQVNEIALEELAERVNGDMRMALNQLQYMSLSMSVINYDDVRQRLQGSAKD EDISPFTAVDKLFGFSGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSIGKDDNGMKRMSLIARAAESIADGDIINVQIRRYRQWQLSQTGSLSSCI IPAALLHGSRETLEQGERNFNRFGGWLGKNSTAGKNSRLLEDLHVHLLASRESNMGRETLRLDYLTVLLKQLTDPLRVLPKDEAVEKVVEFMNVYSISQE DMDTIVELSKFQGHGNPLDGIPSTVKAALTRAYKEERKSRMVRAADLVTLPGKKKAPKKRVAAILEPSDDGLREENGDAVAESEEENSSDTDDMEGTGNG EKLQSELQSLNSKGIQVEVELKCRKESSKSKKTPTGRGKGGSASTEKKPAGRGRGGSGSSEKPGAKRKR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G22010		ATRFC1	replication factor C 1, replic...		Potri.001G213900 [exp]	0	1
AT3G28030		UVR1, UVH3	UV REPAIR DEFECTIVE 1, ULTRAVI...		Potri.017G070500 [exp]	2.44	0.8403
AT1G60200			splicing factor PWI domain-con...		Potri.008G147100 [exp]	3.46	0.8282
AT5G44180	HD		Homeodomain-like transcription...		Potri.007G135500 [exp]	3.46	0.8289
AT1G77310			unknown protein		Potri.002G078800 [exp]	6.00	0.8140
AT1G12930			ARM repeat superfamily protein...		Potri.014G141100 [exp]	7.48	0.8093
AT5G54260		MRE11, ATMRE11	ARABIDOPSIS MEIOTIC RECOMBINAT...		Potri.001G407300 [exp]	7.93	0.8106	Pt-MRE11.1
AT3G23780		NRPE2, DMS2, DR...	DEFECTIVE IN MERISTEM SILENCIN...		Potri.018G019100 [exp]	8.48	0.7838
AT1G55040			zinc finger (Ran-binding) fami...		Potri.005G033000 [exp]	9.94	0.7977
AT3G54230		SUA	suppressor of abi3-5 (.1.2)		Potri.004G081800 [exp]	12.00	0.8244
					Potri.013G071800 [exp]	13.03	0.8164

Compare expression of checked genes

Potri.001G213900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.