Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25835 359 / 1e-118 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G57480 353 / 2e-116 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G30250 346 / 2e-113 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G50940 301 / 8e-97 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28510 300 / 1e-95 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G50930 300 / 4e-95 BCS1 cytochrome BC1 synthesis (.1) AT3G28610 296 / 1e-94 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G40010 295 / 6e-94 ASD, AATP1 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) AT3G28600 293 / 1e-93 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G46620 293 / 1e-93 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G024400 [exp] 842 / 0 AT4G25835 362 / 4e-120 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.018G093600 [exp] 355 / 4e-117 AT5G57480 743 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G169000 [exp] 349 / 1e-114 AT5G57480 776 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G175600 [exp] 309 / 1e-99 AT2G46620 627 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.015G007800 [exp] 306 / 3e-98 AT2G46620 503 / 1e-175 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.015G067400 [exp] 303 / 5e-97 AT5G40010 538 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.014G102300 [exp] 298 / 3e-95 AT2G46620 598 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.007G020600 [exp] 298 / 5e-95 AT2G18193 553 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.007G020500 [exp] 296 / 7e-95 AT2G18193 511 / 1e-179 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042166 [exp] 314 / 6e-101 AT5G40010 526 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10004258 [exp] 308 / 1e-98 AT3G28580 507 / 1e-176 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10014496 [exp] 304 / 4e-97 AT5G40010 577 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10015802 [exp] 300 / 3e-96 AT3G50940 462 / 9e-161 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10030220 [exp] 298 / 4e-95 AT2G46620 603 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10025479 [exp] 294 / 4e-95 AT5G57480 487 / 4e-171 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10005991 [exp] 295 / 7e-94 AT2G46620 598 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10037004 [exp] 293 / 1e-93 AT3G50930 457 / 9e-159 cytochrome BC1 synthesis (.1) Lus10014284 [exp] 292 / 8e-93 AT3G50930 535 / 0.0 cytochrome BC1 synthesis (.1) Lus10015349 [exp] 288 / 2e-91 AT5G40010 536 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00004 [poplar] [flax] AAA ATPase family associated with various cellular activities (AAA) CL0023 [poplar] [flax] PF14363 [poplar] [flax] AAA_assoc Domain associated at C-terminal with AAA
Representative CDS sequence Show only first row Show all	>Potri.001G231200.1 pacid=42788344 polypeptide=Potri.001G231200.1.p locus=Potri.001G231200 ID=Potri.001G231200.1.v4.1 annot-version=v4.1 ATGGAGATATTGTCACAACTTTGGTCACTCTTAGGCCTTCTCACAGTTCTTCAAAACATCTTACCTACACAACTCCTCTCCCTTCTTCACTCCCTCTATG AGTCCCTCCAGGACTTCATCTCCCCATATTCATACTTTGACATCCCTGAATTTAATGGCTACTGTGGTGTTGAAATCAATGATCTCTACCGCCATGTCAA CCTCTATCTCAACTCTGTCAATTCCTCTGCCACTGCCTCCACCTGCCGACGCTTCACCCTCTCCCGTTCCAAGTCATCCAATTGCATTTCCTTCACTATA GCTCCCAATCATACCATCCACGACTCCTTCAATGGCCATTCTCTTTCTTGGACACACCATGTGGACACTGTCCAGGACTCATTAGAAGAGAAACGTAGCT TCACTCTCAAGCTTCCAAAGCGACTCCGGCATTTGCTGCTGTCGCCTTATATCCAGCACGTGACATCACGTGCTGAAGAGTTTGAGCGAGTGTCAAGAGA AAGGAGGCTGTTTACTAACAATGGCAATGCTTCATACGAGTCAGGCTGGGTCTCAGTTCCTTTCCGTCATCCATCCACCTTCGAAACGCTGGCTCTGGAG CCTCACTTGAAGAAGCAGATGATGGAGGACTTGAAGGCATTTGCTAGTGGCAGAGAGTTTTATCACAGAGTTGGACGGGCATGGAAGAGGGGATACTTGC TTTATGGTCCACCAGGGTCGGGCAAATCAAGTCTGATAGCTGCAATGGCTAATTATTTGTGCTATGATGTTTATGATCTTGAACTCACCAAAGTCACTGA CAACTCAGAGCTCAGAGCTCTACTAATCCAGACTAGTAATCGATCAATAATTGTCATTGAGGACATAGACTGCTCCCTTGATCTGACTGCTGATAGAATG ATGAAGGCCACTACTGCTACTGCAACAAGAAGGAAAAGATCATCATCATCAGGTTATAATAAGGACCTGGGTACAGGCAATGATCAGTTATTAGAGGAGA GTGGGCGTGTTACCTTATCAGGTCTCCTCAACTTCACAGATGGATTATGGTCTTGTTGTGGGGAGGAGAGGATAATAGTGTTCACAACCAATCATCGAGA AAATGTGGATCCTGCATTGGTTCGATGCGGGCGGATGGACGTGCATGTTAGCTTAGGCACCTGTGGGATGCATGCATTCAAGGCATTGGCTATGAACTAT CTTGGGATAGAGTGGCATTCTTCTTTTGATGTGGTAGAGAGCTGTATACGGTCAGGTGGCGCACTCACTCCTGCTCAGATAGGGGAGATATTGCTGCGGA ATAGAGGGAACAATGTTGATTTAGCAATAAAAGAAGTGGTGTCTGCAATGCAAGCCAGAATTTTGAGTACTGGCAGCACTGAACATCTAAATACCAGTAT AGAGTATGAAGATATGGCGGCCTTGACAAGGTCACCTCAGAGTGTGTTAACGGTGGGGTCACCGGAGAATTGGGACTCATCTCCGGGGAAGACTAATGGA AAGAAGAGGAAGGCAAAGTTTCTTGTTAGATTAAGATCTTTGACCAAGTCTGACTCTGGTAGAAGGGGTGTGTGA
AA sequence Show only first row Show all	>Potri.001G231200.1 pacid=42788344 polypeptide=Potri.001G231200.1.p locus=Potri.001G231200 ID=Potri.001G231200.1.v4.1 annot-version=v4.1 MEILSQLWSLLGLLTVLQNILPTQLLSLLHSLYESLQDFISPYSYFDIPEFNGYCGVEINDLYRHVNLYLNSVNSSATASTCRRFTLSRSKSSNCISFTI APNHTIHDSFNGHSLSWTHHVDTVQDSLEEKRSFTLKLPKRLRHLLLSPYIQHVTSRAEEFERVSRERRLFTNNGNASYESGWVSVPFRHPSTFETLALE PHLKKQMMEDLKAFASGREFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVTDNSELRALLIQTSNRSIIVIEDIDCSLDLTADRM MKATTATATRRKRSSSSGYNKDLGTGNDQLLEESGRVTLSGLLNFTDGLWSCCGEERIIVFTTNHRENVDPALVRCGRMDVHVSLGTCGMHAFKALAMNY LGIEWHSSFDVVESCIRSGGALTPAQIGEILLRNRGNNVDLAIKEVVSAMQARILSTGSTEHLNTSIEYEDMAALTRSPQSVLTVGSPENWDSSPGKTNG KKRKAKFLVRLRSLTKSDSGRRGV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G25835			P-loop containing nucleoside t...		Potri.001G231200 [exp]	0	1
AT1G31880		BRX, NIP3;1, NL...	BREVIS RADIX, DZC (Disease res...		Potri.003G101500 [exp]	1.41	0.9247
AT5G39050		PMAT1	phenolic glucoside malonyltran...		Potri.001G395400 [exp]	5.09	0.8779
AT1G30080			Glycosyl hydrolase superfamily...		Potri.004G132700 [exp]	6.24	0.9095
AT1G73850			Protein of unknown function (D...		Potri.012G056400 [exp]	7.21	0.9117
AT1G32240	GARP	KAN2, KANADI2	KANADI 2, Homeodomain-like sup...		Potri.003G096300 [exp]	8.12	0.8820
AT5G16560	GARP	KAN1, KAN	KANADI 1, KANADI, Homeodomain-...		Potri.012G042100 [exp]	9.00	0.8871
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Potri.003G157300 [exp]	9.48	0.8987
AT4G29100	bHLH	bHLH068	basic helix-loop-helix (bHLH) ...		Potri.001G185900 [exp]	10.00	0.8854
AT4G39790			Protein of unknown function (D...		Potri.007G090300 [exp]	10.39	0.8463
AT5G23100			Protein of unknown function, D...		Potri.012G058300 [exp]	11.31	0.8916

Compare expression of checked genes

Potri.001G231200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.