Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13510 622 / 0 Protein of Unknown Function (DUF239) (.1) AT1G55360 619 / 0 Protein of Unknown Function (DUF239) (.1) AT5G56530 606 / 0 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) AT2G44210 563 / 0 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) AT5G18460 465 / 1e-162 Protein of Unknown Function (DUF239) (.1) AT1G10750 461 / 1e-160 Protein of Unknown Function (DUF239) (.1) AT2G44220 451 / 2e-157 Protein of Unknown Function (DUF239) (.1) AT5G50150 445 / 7e-155 Protein of Unknown Function (DUF239) (.1) AT1G23340 436 / 2e-151 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) AT1G70550 435 / 3e-151 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G221200 [exp] 656 / 0 AT1G55360 716 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.001G003800 [exp] 653 / 0 AT1G55360 689 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.019G024100 [exp] 487 / 2e-171 AT5G18460 622 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.013G050100 [exp] 479 / 4e-168 AT5G18460 635 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.008G188000 [exp] 451 / 1e-156 AT1G70550 661 / 0.0 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) Potri.015G080300 [exp] 445 / 5e-154 AT5G50150 637 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.010G044300 [exp] 444 / 1e-153 AT1G70550 664 / 0.0 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) Potri.012G088300 [exp] 436 / 2e-151 AT5G50150 592 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.006G233600 [exp] 300 / 7e-98 AT5G25950 310 / 3e-102 Protein of Unknown Function (DUF239) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013410 [exp] 648 / 0 AT3G13510 708 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10010315 [exp] 564 / 0 AT3G13510 626 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10004766 [exp] 488 / 3e-171 AT5G18460 603 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10003100 [exp] 473 / 6e-165 AT5G18460 593 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10013046 [exp] 445 / 7e-154 AT1G10750 642 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10029116 [exp] 441 / 4e-152 AT1G10750 642 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10001248 [exp] 427 / 1e-147 AT5G50150 580 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10042092 [exp] 395 / 3e-135 AT5G50150 540 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10027683 [exp] 389 / 3e-133 AT5G50150 575 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10039949 [exp] 388 / 4e-133 AT5G50150 575 / 0.0 Protein of Unknown Function (DUF239) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03080 [poplar] [flax] Neprosin Neprosin PF14365 [poplar] [flax] Neprosin_AP Neprosin activation peptide
Representative CDS sequence Show only first row Show all	>Potri.001G233000.1 pacid=42791831 polypeptide=Potri.001G233000.1.p locus=Potri.001G233000 ID=Potri.001G233000.1.v4.1 annot-version=v4.1 ATGATGGCGGCACATTTACTGAGGAGGAGCTGGGGTAGCACTATCAGCTTGTTGATAGTGATTTTATTGCTATCCTGCAGCTCCCAAATGACATCCGCAG AAGCAGCACCTGCTTCACGTAAAAGCAGCAGCATATCCATGTCTCAGCACAAAATGTTGGATGCTCACCAGCACTTGAAGCGCCTGAACAAGCCTCCTCT TAAAACCATCAAGAGCCCGGATGGAGATATCATCGACTGCGTCCATATTGCTCACCAACCGGCTTTTGATCATCCTCTGCTCAAGAACCATACAATTCAG ACGAGACCAAATTTCCACCCAGAAGGGACTAAGTTCGAGGAAAGCAAAAGGGTGTCTGCACAGAAAGCAACATCATCAAAACCAATAACCCAGTTGTGGC ACTTGAAAGGAAGGTGTCCTGAAGGAACAATTCCCATAAGGCGAACTAAAAAAGAAGATGTATTAAGGGCAAGCTCTGTTGAAAGGTTTGGCAAGAAGAA GCCCACTAAAATTCCTCATCAACCCAGGTCTGCACAACCTGACCTCATTACTCAAACTGGCCACCAGCATGCGATAGTATATGTGGAAGGAGATAAGTAT TATGGAGCTAAGGCCACCATTAACGTTTGGGAGCCCAAAACACAACAGCCTAATGAATTCAGCTTGTCTCAAATCTGGATCCTTGGAGGTACTTTTGGTC AAGATCTTAACAGCATTGAAGCTGGATGGCAGGTTAGTCCAGATCTATATGGAGATAACAGAACAAGACTCTTCACATATTGGACTAGTGACGCCTATCA AGCCACAGGTTGCTACAATCTGCTGTGCACAGGCTTTATTCAAATCAACAATGAAATAGCGATGGGGGCAAGCATCTTTCCTGTTTCTGGCTACCGTGGC TCCCAGTATGATATCAGCCTTCTTGTTTGGAAGGACCCGAAAGAGGGAAACTGGTGGATTCAATTTGGGAATGACTACGTGCTAGGATACTGGCCAGGCT TCCTCTTTTCCTACTTGACAGACAGCGCAACGATGATAGAGTGGGGAGGTGAGATTGTAAACTCAGAATCAGATGAGCAACACACAACAACTGAAATGGG GAGCGGGCATTTCCCTGAAGAAGGGTTTGGAAAAGCTGGCTACTTCAGGAATATTCAAATTGTTGACGGATCCAATAGTCTCAGGGATCCTAAAGGGCTT GGCACTTTTACCGAGCAATCCAGTTGCTATGATGTCCAGAACGGCAGGAGTGGTGATTGGGGCACCTACTTTTTCTATGGTGGTCCTGGAAGAAACCCCA ATTGCCCATGA
AA sequence Show only first row Show all	>Potri.001G233000.1 pacid=42791831 polypeptide=Potri.001G233000.1.p locus=Potri.001G233000 ID=Potri.001G233000.1.v4.1 annot-version=v4.1 MMAAHLLRRSWGSTISLLIVILLLSCSSQMTSAEAAPASRKSSSISMSQHKMLDAHQHLKRLNKPPLKTIKSPDGDIIDCVHIAHQPAFDHPLLKNHTIQ TRPNFHPEGTKFEESKRVSAQKATSSKPITQLWHLKGRCPEGTIPIRRTKKEDVLRASSVERFGKKKPTKIPHQPRSAQPDLITQTGHQHAIVYVEGDKY YGAKATINVWEPKTQQPNEFSLSQIWILGGTFGQDLNSIEAGWQVSPDLYGDNRTRLFTYWTSDAYQATGCYNLLCTGFIQINNEIAMGASIFPVSGYRG SQYDISLLVWKDPKEGNWWIQFGNDYVLGYWPGFLFSYLTDSATMIEWGGEIVNSESDEQHTTTEMGSGHFPEEGFGKAGYFRNIQIVDGSNSLRDPKGL GTFTEQSSCYDVQNGRSGDWGTYFFYGGPGRNPNCP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G13510			Protein of Unknown Function (D...		Potri.001G233000 [exp]	0	1
AT3G08600			Protein of unknown function (D...		Potri.016G141100 [exp]	3.46	0.7202
AT5G50150			Protein of Unknown Function (D...		Potri.015G080300 [exp]	4.58	0.8218
AT4G30020			PA-domain containing subtilase...		Potri.018G143400 [exp]	5.09	0.8082
AT4G36360		BGAL3	beta-galactosidase 3 (.1.2)		Potri.005G232600 [exp]	6.48	0.7464	GAL1.7
AT3G63200		PLP9, PLAIIIB ,...	PATATIN-like protein 9 (.1)		Potri.005G210100 [exp]	8.83	0.7593
AT3G51950	C3HZnF		Zinc finger (CCCH-type) family...		Potri.009G050700 [exp]	11.09	0.7703
AT3G14240			Subtilase family protein (.1)		Potri.001G163600 [exp]	13.78	0.7386
AT1G63850			BTB/POZ domain-containing prot...		Potri.001G100900 [exp]	16.12	0.7679
AT1G78060			Glycosyl hydrolase family prot...		Potri.002G094000 [exp]	16.85	0.7699
AT3G22960		PKP-ALPHA, PKP1	PLASTIDIAL PYRUVATE KINASE 1, ...		Potri.009G084700 [exp]	18.49	0.7423

Compare expression of checked genes

Potri.001G233000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.