Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07530 758 / 0 GRAS SCL14, ATGRAS2 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) AT2G29060 688 / 0 GRAS GRAS family transcription factor (.1) AT2G37650 535 / 0 GRAS SCL9 GRAS family transcription factor (.1) AT2G29065 523 / 9e-178 GRAS family transcription factor (.1) AT1G07520 496 / 2e-166 GRAS GRAS family transcription factor (.1) AT3G46600 451 / 4e-152 GRAS GRAS family transcription factor (.1.2.3) AT5G59450 445 / 8e-148 GRAS SCL11 GRAS family transcription factor (.1) AT5G48150 226 / 8e-66 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT1G50600 229 / 9e-66 GRAS SCL5 scarecrow-like 5 (.1) AT4G17230 212 / 3e-60 GRAS SCL13 SCARECROW-like 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G032700 [exp] 1251 / 0 AT1G07530 788 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.001G241800 [exp] 758 / 0 AT1G07530 665 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.009G032800 [exp] 729 / 0 AT1G07530 666 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.006G086600 [exp] 648 / 0 AT2G37650 723 / 0.0 GRAS family transcription factor (.1) Potri.008G057400 [exp] 644 / 0 AT2G37650 568 / 0.0 GRAS family transcription factor (.1) Potri.001G242100 [exp] 608 / 0 AT2G29060 563 / 0.0 GRAS family transcription factor (.1) Potri.009G033300 [exp] 593 / 0 AT1G07530 514 / 4e-173 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.010G202300 [exp] 542 / 0 AT1G07530 498 / 2e-167 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.001G241900 [exp] 527 / 6e-179 AT1G07530 497 / 4e-167 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040790 [exp] 863 / 0 AT1G07530 762 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10016521 [exp] 852 / 0 AT1G07530 764 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10040284 [exp] 619 / 0 AT1G07530 600 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10023404 [exp] 617 / 0 AT1G07530 595 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10004968 [exp] 565 / 0 AT1G07530 584 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10024384 [exp] 557 / 0 AT2G37650 610 / 0.0 GRAS family transcription factor (.1) Lus10001577 [exp] 539 / 0 AT1G07530 573 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10040787 [exp] 530 / 3e-180 AT1G07530 555 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10010845 [exp] 505 / 2e-170 AT2G37650 571 / 0.0 GRAS family transcription factor (.1) Lus10016519 [exp] 459 / 5e-157 AT1G07530 449 / 3e-153 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03514 [poplar] [flax] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Potri.001G241700.2 pacid=42793005 polypeptide=Potri.001G241700.2.p locus=Potri.001G241700 ID=Potri.001G241700.2.v4.1 annot-version=v4.1 ATGGGTTCGGATTCTCGTTTCACTGAGTTCCCTGGTTCTAATAAATTTGAGGATGAGATCGTGTTTCCGGATTCAAATCAGTATCACAATGTTTCTAATG GATTCAAGTTCGAAGATTTAGACTTCGACTGTGTAGAAAATCCACTTGTTTTGCCTGACCCAGATCCGGGTGCTTTGTCGTCGATCACAGCCATCGATGA AGATTCTCCTTCTGATGATAATGACTCGGAGAATCTCCTCAAGTACATAAACCAGATGCTTATGGAAGAGGACATGGAAGAGAAGCCCTGTATGTTTCAT GACCCGTTGGCACTTCAAGCTGCTGAGAGATCGCTTTATGATATTCTTGGTGAGAAGAACCAGCCATCCTTACCCCATGACTCTCCTTCGTATGGTGACC AGTTTTTGGTTGATAGCCCGGATGATGTTTTTTGGAGTAGCCGCAGTGATTATAGCAGCAATAAAAGTTCCTTTTCTAATTCTGTCAGCTCGGTAGATCC TCAAGGGAATGGTGAATTTGGGGAATTCAAACCGTTGTTTATGCAAACGCCTCTTCCTAATAATTTTGTTTTTCATTCTGCTGCAAATTTCAGTTCAGAA TCATCATTCAAATTACACAATGGGTTAGCAAGTAATGGCGATAGTGCCACGAAGCCCTCTGCGGGTAACATTGTGGCACCAAATTTGTTCAGTGACAGTG ATTTGGCGTTACAGTTCAAGAGAGGTGTAGAGGAAGCTAGTAAGTTCCTTCCTAAGGGCAATCCACTGATTATTGATTTGGAGACCAGTGCACTGGCTCC AGAGATGAATAGAGATGCCCCGGAGGTGGCGGTGAAGGCCGAGAAGGAAGACAGGGAGTTTTTCCCCGAATGGTTGACGGGAAAGAAGAATCATGAGCGG GAGGATGAGGATTTTGAGGAAGAAAGAAGTAACAAGCAGTCTGCAGTTCATGTAGATGAGAGCGAACTGTCAGAGATGTTTGATATGTTAGTAGGAGTTG GGGAAGGATGCCGACCTCCTGGGTGTATACTTGATCAGGCTGAACAGTGTGAATCAAGCAAGACAGTGCGGCAGAATGGGCAAACAAAGGGATCCAGTGG TAGCAAGACTCGGGCTAAGATACAAGGAAATAACAAGGAAGTTGTTGATTTGAGGACTCTTCTAGTTCTATGTGCACAAGCAGTCTCCTCAAATGATCGC AGAGCCGCTAATGAACTACTGAAGCAGATCAGGCAGCACTCTTCACCTCTCGGTGATGGGTCTCAGAGGCTGGCTAATTGTTTTGCTAATGGCCTCGAAG CACGTTTGGCTGGAACTGGTACCCAGATATATACGGCACTGTCTACTGAAAAATGGTCGGCTGTGGATATGTTGAAAGCTTATCAAGCTTATGTTTCAGC TTGCCCATTCAAGAAGATGGCAATCATCTTTGCAAACCATAACATAATGAAAGTAGCCGAGAAGGCATCGACACTTCATATAATAGATTTTGGTATATTG TATGGTTTCCAGTGGCCTCCCCTCATTTATCGCCTCTCAAGGAGACCAGGTGGGCCTCCCATACTGCGCATTACAGGAATAGAGCTTCCCCAAAGTGGTT TCCGGCCAGCAGAGAGAGTTCAAGAGACAGGTCGTCGCTTGGTAAAGTACTGTGAGCGCTATAATGTTCCATTTGAGTACAACCCCATAGCTCAGAAATG GGATACCATCCAAATTGATGACCTGAAGATCAATCACGATGAAGTTCTCGCTGTAAATTGTCTCTTTAGATTTAAAAATCTGCTTGATGAAACAGTTGTA GTTAACAGTCCCCGGAATGCTGTTCTGAACTTAATCAGTAAGACAAAACCAGATATATTTATCCATGCTATTGTCAATGGATCGTACAATGCTCCTTTTT TTGTCACAAGGTTCAGGGAGACACTGTTCCATTTCTCTGCATTGTTTGATATGTTGGATAGTAATATGCCCCGTGAAGATGAGATGAGGTTGAAGTTTGA AAAAGAGTTCTATGGTCGGGAGGTAATGAATGTCATAGCATGTGAGGGCTCTGAGAGGGTTGAAAGACCTGAGACTTACAAGCAATGGCAGGTTCGGAAC ATGAGAGCTGGGCTGAAGCAACTTCCCTTGGACCCTCATGTCATAAAATATCTGAAGTGTAAGGTGAAGGTTAGGTACCATGAAGATTTTGAGGTCGATG GAGATGGCCACTGGATGCGACAGGGATGGAAAGGACGGACTATCATTGCATCCTCTGCCTGGATTCCTGCATAG
AA sequence Show only first row Show all	>Potri.001G241700.2 pacid=42793005 polypeptide=Potri.001G241700.2.p locus=Potri.001G241700 ID=Potri.001G241700.2.v4.1 annot-version=v4.1 MGSDSRFTEFPGSNKFEDEIVFPDSNQYHNVSNGFKFEDLDFDCVENPLVLPDPDPGALSSITAIDEDSPSDDNDSENLLKYINQMLMEEDMEEKPCMFH DPLALQAAERSLYDILGEKNQPSLPHDSPSYGDQFLVDSPDDVFWSSRSDYSSNKSSFSNSVSSVDPQGNGEFGEFKPLFMQTPLPNNFVFHSAANFSSE SSFKLHNGLASNGDSATKPSAGNIVAPNLFSDSDLALQFKRGVEEASKFLPKGNPLIIDLETSALAPEMNRDAPEVAVKAEKEDREFFPEWLTGKKNHER EDEDFEEERSNKQSAVHVDESELSEMFDMLVGVGEGCRPPGCILDQAEQCESSKTVRQNGQTKGSSGSKTRAKIQGNNKEVVDLRTLLVLCAQAVSSNDR RAANELLKQIRQHSSPLGDGSQRLANCFANGLEARLAGTGTQIYTALSTEKWSAVDMLKAYQAYVSACPFKKMAIIFANHNIMKVAEKASTLHIIDFGIL YGFQWPPLIYRLSRRPGGPPILRITGIELPQSGFRPAERVQETGRRLVKYCERYNVPFEYNPIAQKWDTIQIDDLKINHDEVLAVNCLFRFKNLLDETVV VNSPRNAVLNLISKTKPDIFIHAIVNGSYNAPFFVTRFRETLFHFSALFDMLDSNMPREDEMRLKFEKEFYGREVMNVIACEGSERVERPETYKQWQVRN MRAGLKQLPLDPHVIKYLKCKVKVRYHEDFEVDGDGHWMRQGWKGRTIIASSAWIPA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Potri.001G241700 [exp]	0	1
AT1G43850		SEU	SEUSS transcriptional co-regul...		Potri.007G109400 [exp]	4.79	0.6521
AT5G41940			Ypt/Rab-GAP domain of gyp1p su...		Potri.015G007400 [exp]	13.03	0.5771
AT5G36930			Disease resistance protein (TI...		Potri.011G013700 [exp]	21.26	0.6426
AT2G45590			Protein kinase superfamily pro...		Potri.002G150800 [exp]	26.11	0.5766
AT4G01100		ADNT1	adenine nucleotide transporter...		Potri.003G137500 [exp]	27.44	0.6083
AT1G04990	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.002G223700 [exp]	33.46	0.5655	ZFN2.2
AT1G19250		FMO1	flavin-dependent monooxygenase...		Potri.005G250600 [exp]	51.84	0.5264
AT5G49980		AFB5	auxin F-box protein 5 (.1)		Potri.002G102700 [exp]	54.09	0.5495
AT5G58470		TAF15b	TBP-associated factor 15B (.1....		Potri.001G281300 [exp]	57.00	0.5704
AT4G17770		ATTPS5	TREHALOSE -6-PHOSPHATASE SYNTH...		Potri.003G094500 [exp]	83.07	0.4558	Pt-TPS5.3

Compare expression of checked genes

Potri.001G241700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.