Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29060 489 / 5e-165 GRAS GRAS family transcription factor (.1) AT1G07530 489 / 3e-164 GRAS SCL14, ATGRAS2 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) AT2G37650 472 / 5e-158 GRAS SCL9 GRAS family transcription factor (.1) AT3G46600 434 / 6e-147 GRAS GRAS family transcription factor (.1.2.3) AT5G59450 439 / 8e-147 GRAS SCL11 GRAS family transcription factor (.1) AT2G29065 434 / 2e-144 GRAS family transcription factor (.1) AT1G07520 398 / 1e-129 GRAS GRAS family transcription factor (.1) AT1G50600 218 / 2e-62 GRAS SCL5 scarecrow-like 5 (.1) AT5G48150 209 / 5e-60 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT4G17230 209 / 6e-60 GRAS SCL13 SCARECROW-like 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G033100 [exp] 1070 / 0 AT2G29060 506 / 1e-171 GRAS family transcription factor (.1) Potri.001G242100 [exp] 643 / 0 AT2G29060 563 / 0.0 GRAS family transcription factor (.1) Potri.009G033300 [exp] 639 / 0 AT1G07530 514 / 4e-173 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.006G086600 [exp] 572 / 0 AT2G37650 723 / 0.0 GRAS family transcription factor (.1) Potri.008G057400 [exp] 555 / 0 AT2G37650 568 / 0.0 GRAS family transcription factor (.1) Potri.009G032700 [exp] 537 / 0 AT1G07530 788 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.001G241800 [exp] 522 / 1e-176 AT1G07530 665 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.001G241700 [exp] 508 / 2e-171 AT1G07530 759 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.010G202300 [exp] 501 / 4e-170 AT1G07530 498 / 2e-167 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040787 [exp] 581 / 0 AT1G07530 555 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10040284 [exp] 534 / 0 AT1G07530 600 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10023404 [exp] 533 / 0 AT1G07530 595 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10024384 [exp] 513 / 1e-176 AT2G37650 610 / 0.0 GRAS family transcription factor (.1) Lus10040789 [exp] 498 / 6e-170 AT3G46600 432 / 4e-145 GRAS family transcription factor (.1.2.3) Lus10040790 [exp] 492 / 4e-165 AT1G07530 762 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10016521 [exp] 489 / 3e-164 AT1G07530 764 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10016519 [exp] 471 / 3e-163 AT1G07530 449 / 3e-153 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10004968 [exp] 477 / 4e-160 AT1G07530 584 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10010845 [exp] 473 / 3e-159 AT2G37650 571 / 0.0 GRAS family transcription factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03514 [poplar] [flax] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Potri.001G242000.1 pacid=42791394 polypeptide=Potri.001G242000.1.p locus=Potri.001G242000 ID=Potri.001G242000.1.v4.1 annot-version=v4.1 ATGGTGATTGAATCTATGGATCCACCTTCCTATCCCACCAATCTACAAGCTCCCGCTGACAATCCTTCTTTAAGGTCGACCTCAGATGGAGAATCTCCGT TCGACAGTGAAACGACTGACTGCTACCATGCTGTTTTGAAGTACATACATGACATCTTAATGGAAGATGGCTTGGGGGATAAAACCTGTATGTTACAGGA TAGTCTCGCACTCCAAGCTGCTGAAAAGTCACTTTATGATGTTATCGGCGAAGAGTATCCATCTTCTTCGGATCATTGCCCTCCTTGTTTAATGAATATC AATGAGCGCCCAGATGAGAATTTCACTCCAACTAGAAGTGTTCAATCTTCTGTTACACAGCCATTTGACTCTCCTGAAAGCATGCCGTATTTACATGTAG AAACGCAGCCTTTTGGACAGCTCAATGGAGTCATGGGAAGTGCTAACAAGTCCATTCCATATAGTCATTCTATCAAATTTTCTTCAATGAGAAATGTATC AGATCCTCAAGAGCTAGAGAGAGAGGTAATGGCAGACAGAATCCAGAGGAATGGAAGGAACTACTCATCAATTCAGACAAGGGGAAGGAGGAATCATCAG CATGACAATAATGGCTACTTAGAAGAAGGGAGAAGCAAGAAGCAATCTTCGGCCTCAGAGTCCCTACACTTGGAGCTTCTTGATGATACCTATTTGTATA ATATTGAGAATGGAGGACACATACCGTGTCCTCTGTACGGTAATTCACCAAGTGCAAGGAACAAGAAGTTTCTGCAAAGTGAGCAGTCAGCAGCATCTGA TATGCGCACGAGAGCACTGGCTAATAAAAGAGAGACAGACCTGTGGACTCTGCTAATTCTTTGTGCACAAGCTGCAGGAAGCGGGGATCTAAAGACAGCT AGTGGGAAATTAAAGCAGATTAGGCAACATTCTTCTCCTTTGGGGGATGCAAATCAAAGATTGGCACATTATTTCGCTAATGGCCTTGAGGCACGCCTTG CTGGCACTGGAATGCCACTCTCTGGACCCATTACACAAAGTTCGACAACAGCTGCTGACATCCTGAAAGCTTATGAGCTCTATGTTACAATATGCCCTTT CAGGAAGATGACAAATATGTGTGCAAACAGAACAATTTCTAGATTAGTAGATAAGGCAACAAGCGTGCACATCATTGATTTTGGCATTAGCTACGGATTT CAATGGCCTTGCTTTATCTACAGGCAGTCATTAAGGCCTGGAAGACCTACCAAGATTCGCGTTACGGGAATTGAGCTTCCACAACCAGGTTTCCGGCCTG CAGAAAGGGTTGAAGAGACTGGCCGTCGTTTACAAAGATTTGCTGACAGAATGAAGGTTCCGTTTGAGTACAATGCCATAGCCCAGAAATGGGAAACTAT TCAATATGAGGATCTCAAGATCGATAGAGATCGCGATGAGGTGATTATTGTCAACTGTATGTACCGATTGAAGAACTTACCTGACGACACGATGGTGGTC AACAGCCCCAGGGATGCCGTTCTTAAATTGATTAAGAGAATCAATCCCGATATATTCCTCCATGGAGTTAGTAATGGTTCTTACAATGCTCCCTTCTTTG TCACAAGGTTCCGTGAGGCATTGTTCCATTACTCTGCATTTTTTGATATGCTTGAAGCTACTGCACCTCGAGAAGATCAAGAAAGATTGCTGTTCGAGAG GGAAATGATTGGAAGGGATGCTATAAATGTGATAGCATGTGAGGGTACACAAAGGGTTGAAAGGCCAGAGCCATACAAGCAATGGCATATGAGGAATTTG AGGATTGGATTTAGGCAGGTCCCGTTACATCAAAGCATCATTAAAAGAGTGAAAAACATTAAACATGAATATCATAAAGATTTTATCGTTGATGAGGATG GACAATGGATACTTCTTGGATGGAAGGGGAGAATAATCCATGCTGTTTCAGCTTGGAAACCTGTCCAGGAGTAA
AA sequence Show only first row Show all	>Potri.001G242000.1 pacid=42791394 polypeptide=Potri.001G242000.1.p locus=Potri.001G242000 ID=Potri.001G242000.1.v4.1 annot-version=v4.1 MVIESMDPPSYPTNLQAPADNPSLRSTSDGESPFDSETTDCYHAVLKYIHDILMEDGLGDKTCMLQDSLALQAAEKSLYDVIGEEYPSSSDHCPPCLMNI NERPDENFTPTRSVQSSVTQPFDSPESMPYLHVETQPFGQLNGVMGSANKSIPYSHSIKFSSMRNVSDPQELEREVMADRIQRNGRNYSSIQTRGRRNHQ HDNNGYLEEGRSKKQSSASESLHLELLDDTYLYNIENGGHIPCPLYGNSPSARNKKFLQSEQSAASDMRTRALANKRETDLWTLLILCAQAAGSGDLKTA SGKLKQIRQHSSPLGDANQRLAHYFANGLEARLAGTGMPLSGPITQSSTTAADILKAYELYVTICPFRKMTNMCANRTISRLVDKATSVHIIDFGISYGF QWPCFIYRQSLRPGRPTKIRVTGIELPQPGFRPAERVEETGRRLQRFADRMKVPFEYNAIAQKWETIQYEDLKIDRDRDEVIIVNCMYRLKNLPDDTMVV NSPRDAVLKLIKRINPDIFLHGVSNGSYNAPFFVTRFREALFHYSAFFDMLEATAPREDQERLLFEREMIGRDAINVIACEGTQRVERPEPYKQWHMRNL RIGFRQVPLHQSIIKRVKNIKHEYHKDFIVDEDGQWILLGWKGRIIHAVSAWKPVQE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G29060	GRAS		GRAS family transcription fact...		Potri.001G242000 [exp]	0	1
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Potri.010G072300 [exp]	1.41	0.8747	Pt-ERF1.2,ERF33
AT3G61440		ATCYSC1, ARATH;...	BETA-SUBSTITUTED ALA SYNTHASE ...		Potri.014G086300 [exp]	2.44	0.7988
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Potri.001G241900 [exp]	3.16	0.8005
AT3G23230	AP2_ERF	ERF98	Integrase-type DNA-binding sup...		Potri.010G072400 [exp]	5.29	0.7941
AT1G11330			S-locus lectin protein kinase ...		Potri.011G039100 [exp]	7.74	0.7468
AT4G18220			Drug/metabolite transporter su...		Potri.001G352200 [exp]	8.30	0.7118
AT1G11330			S-locus lectin protein kinase ...		Potri.011G039200 [exp]	8.94	0.7485
AT3G23220	AP2_ERF	ESE1	ethylene and salt inducible 1,...		Potri.010G072600 [exp]	9.94	0.7475
AT3G20770	EIL	AtEIN3, EIN3	ETHYLENE-INSENSITIVE3, Ethylen...		Potri.010G247500 [exp]	11.31	0.6930	EIN3C,CMEIL2.1
AT2G30130	AS2	PCK1, LBD12, AS...	PEACOCK 1, Lateral organ bound...		Potri.010G184400 [exp]	11.61	0.7292

Compare expression of checked genes

Potri.001G242000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.