Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29060 564 / 0 GRAS GRAS family transcription factor (.1) AT1G07530 555 / 0 GRAS SCL14, ATGRAS2 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) AT2G37650 539 / 0 GRAS SCL9 GRAS family transcription factor (.1) AT2G29065 503 / 9e-171 GRAS family transcription factor (.1) AT5G59450 491 / 5e-166 GRAS SCL11 GRAS family transcription factor (.1) AT3G46600 478 / 2e-163 GRAS GRAS family transcription factor (.1.2.3) AT1G07520 460 / 8e-153 GRAS GRAS family transcription factor (.1) AT1G50600 206 / 1e-57 GRAS SCL5 scarecrow-like 5 (.1) AT5G48150 201 / 8e-57 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT4G17230 201 / 2e-56 GRAS SCL13 SCARECROW-like 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G033300 [exp] 1150 / 0 AT1G07530 514 / 4e-173 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.009G033100 [exp] 663 / 0 AT2G29060 506 / 1e-171 GRAS family transcription factor (.1) Potri.001G242000 [exp] 655 / 0 AT2G29060 488 / 9e-165 GRAS family transcription factor (.1) Potri.009G032700 [exp] 620 / 0 AT1G07530 788 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.009G032800 [exp] 615 / 0 AT1G07530 666 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.006G086600 [exp] 614 / 0 AT2G37650 723 / 0.0 GRAS family transcription factor (.1) Potri.001G241700 [exp] 608 / 0 AT1G07530 759 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.008G057400 [exp] 601 / 0 AT2G37650 568 / 0.0 GRAS family transcription factor (.1) Potri.001G241800 [exp] 576 / 0 AT1G07530 665 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040787 [exp] 710 / 0 AT1G07530 555 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10016521 [exp] 596 / 0 AT1G07530 764 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10040790 [exp] 569 / 0 AT1G07530 762 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10024384 [exp] 556 / 0 AT2G37650 610 / 0.0 GRAS family transcription factor (.1) Lus10016519 [exp] 537 / 0 AT1G07530 449 / 3e-153 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10023404 [exp] 524 / 1e-176 AT1G07530 595 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10040284 [exp] 523 / 2e-176 AT1G07530 600 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10004968 [exp] 514 / 8e-174 AT1G07530 584 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10001577 [exp] 508 / 3e-171 AT1G07530 573 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10040789 [exp] 494 / 9e-168 AT3G46600 432 / 4e-145 GRAS family transcription factor (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03514 [poplar] [flax] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Potri.001G242100.1 pacid=42789724 polypeptide=Potri.001G242100.1.p locus=Potri.001G242100 ID=Potri.001G242100.1.v4.1 annot-version=v4.1 ATGAATAACCTTTTCCAAGAATACCCAAATTCCATGAACAGATTCGTATTTGACCACGCTTCAGTTTCTTTCTCTCCAAATAGGGATCTTGTTAATGGAT ATAAACTCAATGATACCTTGAGTAGTCCAAATCCATCTTTTAATTATTTCAATCCTGAATCGCCTAGTGACTCAACATCATCATCTTCTTCCTCAAATTC ATGTTCTGAAGTATATGGTCCAAGCAATAATGTTACTCTCAAGTTCATAAGCGATGTGCTTTTGGAGGAGGACTTGGAGGGTAAGACATGTATGTTGCAG GACTGTTTAACCCTCCAAGCCGCCGAGAAATCCTTATACGATGTCCTTGGTCAGGAGTACCCCCATTCGTCGAATCAAATTCTTTCTTGTTTCAATCAAA ATGTTGAAAGCCCGAATGATGGTGTCACTTGGATTAACAATACTGGTAGCACCAACGGCTATCATACTGCTAACAACTTGGTTGAAAAATCCGATTGGAT TTTTGATCAAGCTGATTTGGAGTTATCTCAAGTACCGCAATCCTCTCCGGTTCTCTCCCTTGAAAAAACCCCTCTAGGAACAGATTTCCAAGGTCCGGCG CATCCTTATGAGATGCTCAGCAAAGGGGAAGGAGAAGCCGGCATTTCTCTTTCAACTAGTGATTATTTGATGTCATCTCCAGAGCGCAGCTCCTCCAACC CTCCGGACAAGGAGGAGAGAGGCTACTCACCAAATAGTTCACGGGGAAGGAAAAATCATCAGCGCGAAGATAGTGATGATTTAGAAGAAGAGAGGGGCAA GAAGCATTCTGCACTTTCTCCTGCAGAGTCCGAGCAGTCAGAGTTGTTTGACGAGGTATTGCTTTGTTCAGGTGCACAGAATGTGTCTGCATCATGTGCT CTTCTGGACAAGTCACAAAATGGAGCAGGGAGAAATGAACAGAGAAAAGGGTCTAATGGTAGAGCGGCACGCGCAAAGAGAAAGGAAAATAAAGAAGAAG TTGTGGATTTGAGCTCTCTCCTCACCCAATGTGCACAAGCTGTGGCAATTGGTGACCAAAGAACTGCAAGTGAGCTACTTAAGCAGATTAGGCAACACTC TTCTCCATTTGGTGATGCAAATCAAAGGTTGGCGCATTACTTTGCTAATGCCCTTGATACACGTTTAGCCGGCACTATGACACCTACATTTGCACCAATT GCAAGTCACAGAACATCAGCAGCTGAGAGTGTAAAAGCTTATCAGGTATATGTTAGAGCATGCCCATTCAAAAGGATGTCTAATTTCTTCGCCAACAGGA CAATTCTGAAACTTGCAAAGAAAGCAACAAGACTACACATTATTGATTTTGGCATTCTTTACGGTTTTCAATGGCCTTGCCTAATCCAGCGTTTATCAGA AAGACCTGGTGGACCTCCCAGGCTACGTATTACAGGAATTGAGCTTCCCCAACCAGATTTCCGGCCTGCAGAAAGGGTTGAGGAGACAGGCCGTCGCTTA GAAAAATATTGTGAGAGGTTTAAAGTCCCTTTCGAGTATGATGCCATAGCACAGAAATGGGAAACCATCAGATATGAGGATCTCAGAATTGACGAAGACG AGATGATTGTCGTCAACAGTTTATATCGGCTAAGGAACCTCCCCGATGACACAGTTGTGGAGAATAGTGCAAGAGACGCTGTTTTGAAGTTGATCAACAA GATCAAACCAGACATGTTTATCCATGGGGTTGTAAATGGTGCTTTCAATGCGCCATACTTTGTCACTAGGTTCCGAGAGGCACTCTACCATTACTCCTCA TTGTTTGATATGTTTGAGGCTAATGTGTCACGTGAAGATGAAAACAGAATGCTGTTTGAAAAAGAGCGATACGGAAGAGAGATTATCAATGTGATAGCAT GTGAGGGCACATCAAGAGTTGAAAGGCCAGAGACATACAAGCAGTGGCAGTCGAGAAATCTGAGAGCTGGGTTCAGGCAACTTACCTTAGATCCGGAGCT TTTCAAGGACGTGAGATCTGTGGTGAAATCAGAGTACCATAAAGATTTTGTTGTTGATGCAGATGGCCAGTGGATGCTTCAGGGATGGAAGGGGAGAATA ATCCATGCTCTTTCTGTTTGGGAACCAGTCCAAGAATAA
AA sequence Show only first row Show all	>Potri.001G242100.1 pacid=42789724 polypeptide=Potri.001G242100.1.p locus=Potri.001G242100 ID=Potri.001G242100.1.v4.1 annot-version=v4.1 MNNLFQEYPNSMNRFVFDHASVSFSPNRDLVNGYKLNDTLSSPNPSFNYFNPESPSDSTSSSSSSNSCSEVYGPSNNVTLKFISDVLLEEDLEGKTCMLQ DCLTLQAAEKSLYDVLGQEYPHSSNQILSCFNQNVESPNDGVTWINNTGSTNGYHTANNLVEKSDWIFDQADLELSQVPQSSPVLSLEKTPLGTDFQGPA HPYEMLSKGEGEAGISLSTSDYLMSSPERSSSNPPDKEERGYSPNSSRGRKNHQREDSDDLEEERGKKHSALSPAESEQSELFDEVLLCSGAQNVSASCA LLDKSQNGAGRNEQRKGSNGRAARAKRKENKEEVVDLSSLLTQCAQAVAIGDQRTASELLKQIRQHSSPFGDANQRLAHYFANALDTRLAGTMTPTFAPI ASHRTSAAESVKAYQVYVRACPFKRMSNFFANRTILKLAKKATRLHIIDFGILYGFQWPCLIQRLSERPGGPPRLRITGIELPQPDFRPAERVEETGRRL EKYCERFKVPFEYDAIAQKWETIRYEDLRIDEDEMIVVNSLYRLRNLPDDTVVENSARDAVLKLINKIKPDMFIHGVVNGAFNAPYFVTRFREALYHYSS LFDMFEANVSREDENRMLFEKERYGREIINVIACEGTSRVERPETYKQWQSRNLRAGFRQLTLDPELFKDVRSVVKSEYHKDFVVDADGQWMLQGWKGRI IHALSVWEPVQE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G29060	GRAS		GRAS family transcription fact...		Potri.001G242100 [exp]	0	1
AT1G19210	AP2_ERF		Integrase-type DNA-binding sup...		Potri.018G047300 [exp]	1.41	0.8964
AT3G03280			unknown protein		Potri.016G128800 [exp]	3.16	0.8900
					Potri.013G049550 [exp]	3.31	0.8378
AT5G48060			C2 calcium/lipid-binding plant...		Potri.001G271400 [exp]	7.07	0.8508
AT1G21910	AP2_ERF	DREB26	dehydration response element-b...		Potri.005G176000 [exp]	8.30	0.8691	DREB39
					Potri.007G051401 [exp]	8.94	0.8314
					Potri.012G100450 [exp]	13.41	0.8376
AT3G24255			RNA-directed DNA polymerase (r...		Potri.004G185050 [exp]	13.56	0.8545
AT4G20820			FAD-binding Berberine family p...		Potri.011G162732 [exp]	13.74	0.8406
					Potri.017G045000 [exp]	14.49	0.8455

Compare expression of checked genes

Potri.001G242100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.