Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38080 874 / 0 ATLMCO4, IRX12, LAC4 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) AT5G01190 799 / 0 LAC10 laccase 10 (.1) AT5G58910 795 / 0 LAC16 laccase 16 (.1) AT5G03260 711 / 0 LAC11 laccase 11 (.1) AT5G60020 664 / 0 LAC17, ATLAC17 laccase 17 (.1) AT2G29130 639 / 0 LAC2, ATLAC2 laccase 2 (.1) AT5G05390 585 / 0 LAC12 laccase 12 (.1) AT2G30210 572 / 0 LAC3 laccase 3 (.1) AT2G40370 568 / 0 LAC5 laccase 5 (.1) AT1G18140 556 / 0 LAC1, ATLAC1 laccase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G042500 [exp] 1058 / 0 AT2G38080 891 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Potri.016G112000 [exp] 939 / 0 AT2G38080 911 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Potri.006G096900 [exp] 934 / 0 AT2G38080 899 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Potri.016G112100 [exp] 933 / 0 AT2G38080 891 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Potri.006G097000 [exp] 931 / 0 AT2G38080 914 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Potri.006G097100 [exp] 930 / 0 AT2G38080 896 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Potri.010G193100 [exp] 816 / 0 AT2G38080 771 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Potri.008G064000 [exp] 806 / 0 AT2G38080 728 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Potri.009G102700 [exp] 733 / 0 AT5G03260 881 / 0.0 laccase 11 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035517 [exp] 894 / 0 AT2G38080 907 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Lus10040697 [exp] 893 / 0 AT2G38080 828 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Lus10018208 [exp] 891 / 0 AT2G38080 837 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Lus10032894 [exp] 872 / 0 AT2G38080 894 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Lus10027782 [exp] 865 / 0 AT2G38080 887 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Lus10017175 [exp] 865 / 0 AT2G38080 875 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Lus10041481 [exp] 792 / 0 AT2G38080 807 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Lus10028263 [exp] 783 / 0 AT2G38080 775 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Lus10034289 [exp] 776 / 0 AT2G38080 795 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Lus10023189 [exp] 712 / 0 AT5G03260 930 / 0.0 laccase 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [poplar] [flax] CU_oxidase PF00394 [poplar] [flax] Cu-oxidase Multicopper oxidase CL0026 [poplar] [flax] CU_oxidase PF07731 [poplar] [flax] Cu-oxidase_2 Multicopper oxidase CL0026 [poplar] [flax] CU_oxidase PF07732 [poplar] [flax] Cu-oxidase_3 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Potri.001G248700.1 pacid=42789371 polypeptide=Potri.001G248700.1.p locus=Potri.001G248700 ID=Potri.001G248700.1.v4.1 annot-version=v4.1 ATGGTCGACATGGCACTATGGCTTCGTGTTCTAGTTCTGGTGGCTTGTCTGTTTCCGGCATCTGTGGAGTCCATGGTCCGGCACTACAAGTTCAATGTGG TGATGAAAAATACCACGAGACTGTGTTCAGAAAAGCCCATTGTCACTGTCAATGGAAGGTTCCCTGGGCCCACTTTAGTTGCCAGGGAAGATGACACAGT GCTGGTGAAGGTGGTCAACCACGTCAAATACAATGTCAGTATCCATTGGCATGGAATCAGACAGCTGCGGACAGGTTGGGCCGATGGCCCAGCATACATA ACGCAGTGTCCTCTTCAGCCAGGACAGAGCTTCGTGTACAATTTCACCATTTCTGGTCAAAGGGGCACCCTACTCTGGCATGCACATATCCTCTGGCTCA GGGCCACTGTCCATGGTGCTATTGTCATCTTGCCCAAGCGAGGTGTTCCTTACCCATTTCCTACACCACACAGGGAAGAAGTCATTGTATTAGGTGAATG GTGGAAATCAGATGTTGAAGCTGTGATCAACGAGGCAATGAATTCTGGGAGGGCACCTAATGTCTCAGATGCTCACACGATCAATGGTCATCCAGGGCCT GTCTCAGGCTGCTCTTCACAGGGAGGATATAATTTACCAGTACGGCCCGGAAAGACTTACATGCTTCGGATTATCAACGCTGCACTAAATGAAGAGCTCT TCTTTAAGATTGCTGGCCATCAACTCACTGTTGTAGAGGTTGATGCCACATACGTTAAACCCTTCAAAATCGACACCATTGTCATAGCCCCAGGCCAAAC CACTAACGTTCTTGTGACAGCAAACCGTGGTTCTGGCAAGTACTTGGTTGCTGCCTCACCCTTCATGGACGCACCCATTGCGGTTGATAACGTGACGGCC ACAGCCACGTTACATTACTCTGGCACCCTTGCTAGTACCACCACTACCCTCACCGTCCCTCCAGCGCAAAATGCCACCCCAGTAGCTACAAACTTTACAG ATGCTCTACGTAGCTTGAATTCGATAAAATATCCTGCTCGAGTCCCATTAAAAATCGATCACTCTCTCTTTTTTACCATTGGCCTCGGTGTCAATCCTTG TGCTACTTGTGTCAATGGGAACCGAGTTGTGGCAGATATCAATAACGTTACATTTGTTATGCCAACAATTGCTCTCCTTCAAGCTCATTTCTTCAACATC AAAGGTGTTTTCACAGATGACTTCCCAGGCAACCCGCCCACACCATTCAACTATACAGGCACACAACCAAAAAACTTTCAAACAGTGAATGGAACAAAAC TTTATAGACTTGCTTATAACTCTACTGTCCAACTAGTGCTACAAGATACAGGAATGCTTACTCCTGAAAACCACCCTGTCCATTTGCATGGCTTCAATTT CTTCGAAGTTGGGAGGGGAATAGGTAATTTCAATCCAAAGAGGGACCCAAAGAAATTCAATCTTGCTGACCCAGTGGAGAGGAACACAATTGGAGTCCCA GCTGGTGGATGGACTGCTATAAGGTTCATAGCAGATAATCCAGGGGTTTGGTTCATGCATTGCCATTTGGAAGTCCATACAACATGGGGACTTAAGATGG CATTTGTTGTAGACAATGGCAAAGGCCCTAATGAATCTGTTTTACCTCCTCCTCCGGATCTACCAAAGTGCTAG
AA sequence Show only first row Show all	>Potri.001G248700.1 pacid=42789371 polypeptide=Potri.001G248700.1.p locus=Potri.001G248700 ID=Potri.001G248700.1.v4.1 annot-version=v4.1 MVDMALWLRVLVLVACLFPASVESMVRHYKFNVVMKNTTRLCSEKPIVTVNGRFPGPTLVAREDDTVLVKVVNHVKYNVSIHWHGIRQLRTGWADGPAYI TQCPLQPGQSFVYNFTISGQRGTLLWHAHILWLRATVHGAIVILPKRGVPYPFPTPHREEVIVLGEWWKSDVEAVINEAMNSGRAPNVSDAHTINGHPGP VSGCSSQGGYNLPVRPGKTYMLRIINAALNEELFFKIAGHQLTVVEVDATYVKPFKIDTIVIAPGQTTNVLVTANRGSGKYLVAASPFMDAPIAVDNVTA TATLHYSGTLASTTTTLTVPPAQNATPVATNFTDALRSLNSIKYPARVPLKIDHSLFFTIGLGVNPCATCVNGNRVVADINNVTFVMPTIALLQAHFFNI KGVFTDDFPGNPPTPFNYTGTQPKNFQTVNGTKLYRLAYNSTVQLVLQDTGMLTPENHPVHLHGFNFFEVGRGIGNFNPKRDPKKFNLADPVERNTIGVP AGGWTAIRFIADNPGVWFMHCHLEVHTTWGLKMAFVVDNGKGPNESVLPPPPDLPKC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Potri.001G248700 [exp]	0	1
AT1G23160			Auxin-responsive GH3 family pr...		Potri.014G136800 [exp]	1.00	0.8768
AT1G73640		AtRABA6a	RAB GTPase homolog A6A (.1)		Potri.015G039700 [exp]	6.00	0.7724
AT5G40990		GLIP1	GDSL lipase 1 (.1)		Potri.017G134350 [exp]	6.00	0.7555
AT1G19300		ATGATL1, GATL1,...	PARVUS, GAOLAOZHUANGREN 1, GAL...		Potri.002G132900 [exp]	6.32	0.8014
AT2G31945			unknown protein		Potri.003G215300 [exp]	6.63	0.7680
AT1G34670	MYB	ATMYB93	myb domain protein 93 (.1)		Potri.007G093900 [exp]	10.24	0.7549
AT1G14190			Glucose-methanol-choline (GMC)...		Potri.010G168200 [exp]	15.32	0.7575
AT1G79420			Protein of unknown function (D...		Potri.008G081700 [exp]	15.74	0.6757
					Potri.019G129600 [exp]	16.24	0.6864
					Potri.019G129200 [exp]	16.73	0.7155

Compare expression of checked genes

Potri.001G248700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.