Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12870 219 / 9e-70 MYB ATMYB46 myb domain protein 46 (.1) AT3G08500 204 / 2e-63 MYB ATMYB83 myb domain protein 83 (.1) AT1G09540 188 / 9e-57 MYB AtMYB61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, myb domain protein 61 (.1) AT3G13890 187 / 2e-56 MYB ATMYB26, MS35 MALE STERILE 35, myb domain protein 26 (.1.2) AT5G26660 186 / 3e-56 MYB ATMYB4, ATMYB86 myb domain protein 86 (.1) AT1G57560 184 / 6e-56 MYB ATMYB50 myb domain protein 50 (.1) AT4G01680 180 / 4e-55 MYB ATMYB55 myb domain protein 55 (.1.2.3) AT1G63910 176 / 5e-52 MYB AtMYB103 myb domain protein 103 (.1) AT3G12720 168 / 7e-50 MYB ATMYB67, AtY53 myb domain protein 67 (.1) AT4G05100 166 / 1e-48 MYB ATMYB74 myb domain protein 74 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G053900 [exp] 466 / 2e-166 AT5G12870 224 / 8e-72 myb domain protein 46 (.1) Potri.001G267300 [exp] 254 / 4e-83 AT3G08500 266 / 1e-87 myb domain protein 83 (.1) Potri.009G061500 [exp] 248 / 1e-80 AT3G08500 224 / 6e-71 myb domain protein 83 (.1) Potri.001G197000 [exp] 186 / 6e-56 AT3G13890 256 / 1e-82 MALE STERILE 35, myb domain protein 26 (.1.2) Potri.013G001000 [exp] 187 / 1e-55 AT1G09540 382 / 1e-130 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, myb domain protein 61 (.1) Potri.005G001600 [exp] 186 / 3e-55 AT1G09540 376 / 1e-128 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, myb domain protein 61 (.1) Potri.015G082700 [exp] 181 / 4e-54 AT1G57560 254 / 2e-82 myb domain protein 50 (.1) Potri.012G084100 [exp] 181 / 4e-54 AT5G26660 253 / 1e-81 myb domain protein 86 (.1) Potri.014G111200 [exp] 182 / 2e-53 AT4G01680 282 / 3e-93 myb domain protein 55 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031281 [exp] 245 / 2e-79 AT3G08500 228 / 1e-72 myb domain protein 83 (.1) Lus10002559 [exp] 231 / 2e-73 AT5G12870 225 / 7e-72 myb domain protein 46 (.1) Lus10027369 [exp] 225 / 3e-71 AT5G12870 218 / 5e-69 myb domain protein 46 (.1) Lus10031850 [exp] 219 / 4e-69 AT3G08500 224 / 1e-70 myb domain protein 83 (.1) Lus10029520 [exp] 211 / 1e-65 AT5G12870 220 / 2e-69 myb domain protein 46 (.1) Lus10039610 [exp] 211 / 2e-65 AT5G12870 219 / 3e-69 myb domain protein 46 (.1) Lus10019707 [exp] 181 / 4e-55 AT3G08500 184 / 2e-56 myb domain protein 83 (.1) Lus10015608 [exp] 184 / 6e-55 AT3G13890 249 / 8e-80 MALE STERILE 35, myb domain protein 26 (.1.2) Lus10038022 [exp] 181 / 4e-53 AT4G01680 273 / 8e-90 myb domain protein 55 (.1.2.3) Lus10024669 [exp] 174 / 6e-50 AT1G63910 260 / 2e-82 myb domain protein 103 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.001G258700.1 pacid=42792435 polypeptide=Potri.001G258700.1.p locus=Potri.001G258700 ID=Potri.001G258700.1.v4.1 annot-version=v4.1 ATGAGGAAGCCAGAGGCCTCTGGGAAGAACAACGATATAAGTAACAAGTTCAAAAAGGGCTTGTGGTCGCCGGAGGAAGACGACAAGCTCATGAACTACA TACTAAACAATGGACAAGGTTGTTGGAGTGATGTAGCAAGGAATGCTGGTTTGCAGAGGTGTGGCAAGAGTTGCCGGCTTCGTTGGATTAATTACTTGAG GCCTGATCTCAAGAGAGGTGCATTTTCACCCCAGGAAGAAGAGATGACCATCCATTTGCATTCCCTTCTTGGCAATAGGTGGTCTCAAATAGCGGCTCGC TTGCCAGGAAGAACCGACAATGAAATCAAGAACTTTTGGAATTCAACAATAAAGAAAAGACTAAAGAGCCTGCAGTCATCCAACGCATCACCAAACACAA GTGATTCATCCTCGGAGCCTAGCAAAGAAGTCATGGGAGGGTTCATAACCATGCAAGAGCAAGGCATTTTGCCAATGAACATGGATCCGTCACTGTCATC TTCATCATCGTTGGAAACCTCCATGCAAGCAATGATTCTAAATACCATGATGGACCCATTATTACCTATGCTTGATCATGATCATGGCCTAAACATGTAT ATTGGTGGTGCAAGTGGATACGAATTCAATGGTGCACCACCATGCATGACTCATCAAGTTCGAGTGAACAGTTCTGATCATGGGTTGTATGGGCCGGAAG GGATCTTTGGAGGTGTTAATGTTGGGATTCCTCCTTTAGAGAGTGTAAGCTGCATGGAGGAAAATGCAAAAAGCCAAACTATACAGGATAATAGCACTGA CAAGCACCCATATAGTAGCTACGTGAGTAGTCTTAACAAAAATTGCAATAGCACTAGTACTGATCATAACAAGACAGATAACGCAGCTGCTGAGATGGGG AATTTTTGGCACGGAGAAGAGTTAAAAGTGGGGGAGTACTGGGACTTGGAAGATTTCATGAGAGATGTTTCGGCCTGTCCTTCTCTTGATTTCCAAAGTT GA
AA sequence Show only first row Show all	>Potri.001G258700.1 pacid=42792435 polypeptide=Potri.001G258700.1.p locus=Potri.001G258700 ID=Potri.001G258700.1.v4.1 annot-version=v4.1 MRKPEASGKNNDISNKFKKGLWSPEEDDKLMNYILNNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEEMTIHLHSLLGNRWSQIAAR LPGRTDNEIKNFWNSTIKKRLKSLQSSNASPNTSDSSSEPSKEVMGGFITMQEQGILPMNMDPSLSSSSSLETSMQAMILNTMMDPLLPMLDHDHGLNMY IGGASGYEFNGAPPCMTHQVRVNSSDHGLYGPEGIFGGVNVGIPPLESVSCMEENAKSQTIQDNSTDKHPYSSYVSSLNKNCNSTSTDHNKTDNAAAEMG NFWHGEELKVGEYWDLEDFMRDVSACPSLDFQS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G12870	MYB	ATMYB46	myb domain protein 46 (.1)		Potri.001G258700 [exp]	0	1
AT5G12870	MYB	ATMYB46	myb domain protein 46 (.1)		Potri.009G053900 [exp]	1.00	0.9371
AT3G62020		GLP10	germin-like protein 10 (.1.2)		Potri.002G184900 [exp]	1.41	0.9061	GLP10.1
AT5G66360		DIM1B	adenosine dimethyl transferase...		Potri.006G264101 [exp]	6.00	0.8599
AT3G06035			Glycoprotein membrane precurso...		Potri.008G195000 [exp]	6.00	0.8781
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Potri.016G112000 [exp]	6.48	0.8631
AT5G55950			Nucleotide/sugar transporter f...		Potri.001G370800 [exp]	8.30	0.8936
AT4G33330		PGSIP3, GUX2	glucuronic acid substitution o...		Potri.014G029900 [exp]	10.95	0.8868
AT1G55830			unknown protein		Potri.001G370700 [exp]	11.22	0.8582
AT2G33385		ARPC2B	actin-related protein C2B (.1....		Potri.008G170800 [exp]	11.48	0.8674
AT2G20190		ATCLASP	CLIP-associated protein (.1)		Potri.002G253200 [exp]	11.66	0.8600

Compare expression of checked genes

Potri.001G258700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.