Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14470 538 / 2e-170 NB-ARC domain-containing disease resistance protein (.1) AT3G14460 413 / 3e-121 LRR and NB-ARC domains-containing disease resistance protein (.1) AT3G50950 197 / 1e-51 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) AT1G50180 155 / 4e-38 NB-ARC domain-containing disease resistance protein (.1) AT3G46730 150 / 2e-36 NB-ARC domain-containing disease resistance protein (.1) AT3G46530 148 / 5e-36 RPP13 RECOGNITION OF PERONOSPORA PARASITICA 13, NB-ARC domain-containing disease resistance protein (.1) AT1G59218 146 / 3e-35 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G58848 146 / 3e-35 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT5G35450 145 / 7e-35 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G58807 140 / 3e-33 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G261600 [exp] 1004 / 0 AT3G14470 628 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.004G194800 [exp] 917 / 0 AT3G14470 622 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.004G196100 [exp] 909 / 0 AT3G14470 647 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.007G137101 [exp] 713 / 0 AT3G14470 616 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.001G029300 [exp] 706 / 0 AT3G14470 676 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.017G015600 [exp] 704 / 0 AT3G14470 591 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.017G015200 [exp] 640 / 0 AT3G14470 559 / 5e-178 NB-ARC domain-containing disease resistance protein (.1) Potri.005G007001 [exp] 622 / 0 AT3G14470 647 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.003G200200 [exp] 615 / 0 AT3G14470 634 / 0.0 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005321 [exp] 881 / 0 AT3G14460 607 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10026132 [exp] 802 / 0 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10026109 [exp] 775 / 0 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10039509 [exp] 655 / 0 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039540 [exp] 649 / 0 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10007261 [exp] 624 / 0 AT3G14460 654 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10024173 [exp] 589 / 0 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10016316 [exp] 352 / 3e-101 AT3G14470 494 / 6e-156 NB-ARC domain-containing disease resistance protein (.1) Lus10022351 [exp] 350 / 6e-100 AT3G14470 369 / 1e-108 NB-ARC domain-containing disease resistance protein (.1) Lus10005218 [exp] 344 / 8e-99 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Potri.001G261300.1 pacid=42793558 polypeptide=Potri.001G261300.1.p locus=Potri.001G261300 ID=Potri.001G261300.1.v4.1 annot-version=v4.1 ATGGCTCTTGTTATCGGAGACGCTATCCTTTCAGCTACAATCAGCCATATAATCAACCAATTAGCCTCTCTGGAGCTACTCAAGTTCGCTCGCAGAGGAA AAATCCACTCTGATATCAAGAAACTGGAGGCAAATTTGCATATGATCCATGCTGTTCTTGATGACGCTGAGGAGAAGCAGATGGGAAGCCATGCTGTCAA ACTCTGGCTTGATCAGATCCGTGAATTGGCCTATGATATGGAAGATTTGCTCGACGGGGTTTTCTCTGAGCTTAAAGAGGAACAACGGGCTAGCTCAAGT AAGGCGAAGAGCGCCATACCCGGGTTCTTATCCTCTTTTTATCCTGGTAATTTGCTCTTAACTTACAAAATGGACTCCAAGATTAAGAGAACTACTGCTA GATTTCAAGAAATTGCTCAAAAGAAGAATAATCTTGAGCTTAGAGAGAATGGCAGTGGAGGGGTGTTGAAGAGTAAGTCATTGAAAAGATTGCCCAGTAC TTCTTTAGTGGATCTTTCTTATGTTTCTGGTAGGGATAAAGATAAAGAGGAAATCTTGAAGTTGCTTTTTAGTGATGAAGGGTGTGATGAGTACGGGATT GGTGTGATTCCTATTGTAGGGATGGGTGGTGTGGGTAAGACCACTCTTGCTCAGCTTGTCTACAATGATGAGACGGTAGATAATTTTTTCGATTTGAAAG TTTGGTGTTGTGTTTCTGAGGATTTTGATGTTGTTAGGGTTACGAGAACTATTCTTGAGGCAGTTTCGGGGAGTTACGATGCGAAGGATTTGAATCTGCT TCAACTTAGGCTGAGAGAGAAATTGGCGGGGAAGAAGTTTCTTATTGTTTTAGATGATGTTTGGAATGAGAACTATGATGACTGGACTGTCCTTCGCCGT CCTTTCCAAGTGACATCCCCTGGGAGTAGAATCATCCTCACAACTCGTAATCAAGATGTTGCATTAATGATGAGTGCTTTTCCATGTTACCTTTTGAAAG AACTGTCATTTGAGGATAGCCTGTCTTTGTTTGCAAAGCATGCACTGGGAAGGTCCAATTTCAGTGATCTGCCAGACCTGCAGGAGATCGGCCAGAAAAT AGTTCAAAGGTGCGGGGGACTGCCATTGGCTGTTAAAACACTGGGGGGCCTCTTGCGCACTAAACCTTATGTTGATGAATGGGAAAGTGTACTTAATAGC AAAATGTGGGATATATCAGAACACAAGGGCGGCATAGTTCCCGCCTTGAGGTTGAGCTACTATCATCTTCCTTCACACTTGAAGCAATTGTTTGTTTTCT GTTCTATACTTCCAAAAGACTATGAATTCTACAAGGATGAATTAGTGTTGTTATGGATGGCCCAAGGGTTTCTGCCAGATGCAGGAGGAAAGAAGCGGAT GGAAGACTTCTATTCTTGTTTTAATGAATTATTATCAAGATCGTTTTTCCAGCGATCAAGCAGCAATGAACAACGTTATCTGATGCATCATCTCATCAGT GATCTGGCTCAATCTATTGCTGGAGAAACGTGTGTCAATTTAAATGATAAGCTGGAAAATAACAAGGTCTTTCCAGATCCTGAAAAGACTCGCCATATGT CATTCACTCGTCGTACATACGAGGTGCTGCAGAGGTTCAAAGACCTGGGTAAACTGAAGCGTCTGCGAACTTTCATTGCATTGCGACTTTACTCTTCACC TTGGGCCGCATATTGCTACCTGAGTAATAATGTATTACATGAGGCACTGTCCAAATTGAGACGCTTAAGAGTTCTTTCATTGAGTGGTTATTGCATTACA GAGCTACCAAATTCAATTGGTGATTTGAAGCAGTTACGTTACCTTAATTTCTCTCAAACTAAGATTAAGCGGTTGCCTGAATCTGTGAGCACTCTCATAA ACTTGCAGACTCTCAAATTATATGGATGCAGGAAGCTTAATAAGCTGCCACAAGGGACTGGGAATCTTATCGATCTTTGTCATCTGGATATTACTGATAC TGATAACTTGTTTGAGATGCCTTCGTGGATGGGTAATTTGACAGGTCTTCAGAAATTGTCAAAGTTCACCGTAGGAAAAAAAGAGGGCTGCGGAATTGAA GAATTAAGAGGGTTGCAGAATCTTGAAGGCCGACTTTCCATAATGGCATTGCATAATGTGATAGATGCTCGACATGCAGTTCATGCTAATTTAAGGGGCA AGCACAACCTTGATGAGTTAGAATTGGAATGGTCTAAGAGTGACATTAAAGATGAAGACCGACAACATCAAATGCTTGTTCTCGACTCACTACAACCTCA TACAAACCTTAAAGAACTAAAGATTTCATTCTATGGCGGGACAGAATTTCCTTCATGGGTAGGACATCCATCATTTTCCAAAATAGTGCACTTAAAACTT TCTTGTTGCAGGAAATGCACTGTATTGCCACCACTTGGGAGGCTACCTTTACTCAGGGATCTGTGCATACAAGGCCTGGATGCTGTGGAGACTGTTGGTC ATGAGTTTTATGGAGATTGTTCTTCAGTCAAGCCTTTTCCATCTCTGAAGACTTTGACATTTGAGGATATGCAGGAATGGAAATCTTGGTCCGCAGTTGG AGTTGATGGAGAAGCTGAAGAACAATTTCCTAGTCTTTCTGAGCTTACTTTATGGAATTGTCCCAAGTTGCTCGGCAGGTTCCCTAGCTGTCTTCCTTCC TGTGTAAAGATTACGATTGCAAAATGCCCAATGTTGGTAGATTCAGATGAAAAGCTTCCAGTGCTTGGTGAACTGAAATTAGAAGAATGTGATGAGGTGA AACCTAAATGCATGTTTCATAACTCCTCTCTAATCACATTGAAACTTGGGAGTATGTCAAGGCTTACTTATTTGAAGGGCCAGCTTCTGCAGTCACTGGG AGCACTTAAAGTTCTGATGATTTCTGATTTCCCCAAACTAACCTCTTTGTGGCAAAAAGGAACTGGATTAGAAAATTTTGAACACCCTCAATTTGTGTCA TTGACAGAGATTGGTATGCCCAGCACTCATAAAAGTTCAAAATTGTCAGGCTGTGATAAGCTGGATCTTCTGCCAATCCATACGGTGCACATGCTTTTGT CTCTTGAGGATCTGTGCATTGAATCATGTCCAAATCTTGTGTCCATTCCTGAAGCTGGACTTTTATCGTCACTGAGACATCTAGTACTTCGGGATTGCAA AGCTCTTAGATCCCTCCCTGATGGCATGAGCAATTGTCCTCTTGAAGACTTGGAGATAGAAGAGTGTCCTTCCCTCGAATGCTTTCCAGGAAGGATGTTG CCTGCGACGTTAAAAGGGTTGAAGATTCGATACTGTACAGAATTAAAGTCTCTGCCTGAGGATTTGATGCACAACAAAAATGGCCCTGGCACCCTGTGTC ATTTTGAGCACCTGGAGATCATTGGCTGTCCATCTCTCAAATCCTTTCCTGATGGGAAATTACCAACTCGACTCAAGACACTAAAAATCTGGGATTGTTC CCAATTGAAGCCTCTTTCAGAAATGATGTTGCATGATGATATGTCCCTTGAATACCTAGCCATTTCAGACTGCGAAGCCCTGTCAAGCTTTCCTGAGTGC CTTAGCAGCTTCAAGCATCTCTCTGAATTAAATTTAAGTAATTGTTCTGCTCTCAAGCTCTTTCCAGGAGTTGGCTTTCCCCCCGCTAACCTCAGAACGT TGACTATATACAATTGCAAAAATCTCAAGTCTCTACCTAATGAGATGCGAAAACTCACATCTCTGCAAGAACTGACAATTTGTAGCTGCCCAGCTCTGAA ATCCTTTCCAAATGGTGATATGCCTCCACACTTGACATCGCTTGAGATCTGGGATTGTGATAATCTCGATGGGTGCCTGTCAGAGTGGAACTTGCAAAGT CTAACCTGCCTTAGAGATTTTAGTATCGCTGGTGGATGTTTTTCGCACACAGTTTCCTTTCCAGATGAGAAGTGTCTGCTTCCTACAAATCTAACTTCTG TTTGGATTGGAAGACTTCCAAATCTGGAATCTCTATCCATGCAGCTCCAAAGTCTTGCGTATCTAGAAGAGCTAGAAATTGTTGATTGTCCTAAATTAAA GTCCTTGCCTAGGGGATGCCTACCTCATGCTCTTGGAAGATTCAGCATCAGGGACTGTCCGTTAATGACACAGCGCTGTTCCAAGCTGAAAGGAGTGTAC TGGCCATTGATATCCCACATCCCTTGTGTGGAGATAGATGATGGCAATGACATGTAA
AA sequence Show only first row Show all	>Potri.001G261300.1 pacid=42793558 polypeptide=Potri.001G261300.1.p locus=Potri.001G261300 ID=Potri.001G261300.1.v4.1 annot-version=v4.1 MALVIGDAILSATISHIINQLASLELLKFARRGKIHSDIKKLEANLHMIHAVLDDAEEKQMGSHAVKLWLDQIRELAYDMEDLLDGVFSELKEEQRASSS KAKSAIPGFLSSFYPGNLLLTYKMDSKIKRTTARFQEIAQKKNNLELRENGSGGVLKSKSLKRLPSTSLVDLSYVSGRDKDKEEILKLLFSDEGCDEYGI GVIPIVGMGGVGKTTLAQLVYNDETVDNFFDLKVWCCVSEDFDVVRVTRTILEAVSGSYDAKDLNLLQLRLREKLAGKKFLIVLDDVWNENYDDWTVLRR PFQVTSPGSRIILTTRNQDVALMMSAFPCYLLKELSFEDSLSLFAKHALGRSNFSDLPDLQEIGQKIVQRCGGLPLAVKTLGGLLRTKPYVDEWESVLNS KMWDISEHKGGIVPALRLSYYHLPSHLKQLFVFCSILPKDYEFYKDELVLLWMAQGFLPDAGGKKRMEDFYSCFNELLSRSFFQRSSSNEQRYLMHHLIS DLAQSIAGETCVNLNDKLENNKVFPDPEKTRHMSFTRRTYEVLQRFKDLGKLKRLRTFIALRLYSSPWAAYCYLSNNVLHEALSKLRRLRVLSLSGYCIT ELPNSIGDLKQLRYLNFSQTKIKRLPESVSTLINLQTLKLYGCRKLNKLPQGTGNLIDLCHLDITDTDNLFEMPSWMGNLTGLQKLSKFTVGKKEGCGIE ELRGLQNLEGRLSIMALHNVIDARHAVHANLRGKHNLDELELEWSKSDIKDEDRQHQMLVLDSLQPHTNLKELKISFYGGTEFPSWVGHPSFSKIVHLKL SCCRKCTVLPPLGRLPLLRDLCIQGLDAVETVGHEFYGDCSSVKPFPSLKTLTFEDMQEWKSWSAVGVDGEAEEQFPSLSELTLWNCPKLLGRFPSCLPS CVKITIAKCPMLVDSDEKLPVLGELKLEECDEVKPKCMFHNSSLITLKLGSMSRLTYLKGQLLQSLGALKVLMISDFPKLTSLWQKGTGLENFEHPQFVS LTEIGMPSTHKSSKLSGCDKLDLLPIHTVHMLLSLEDLCIESCPNLVSIPEAGLLSSLRHLVLRDCKALRSLPDGMSNCPLEDLEIEECPSLECFPGRML PATLKGLKIRYCTELKSLPEDLMHNKNGPGTLCHFEHLEIIGCPSLKSFPDGKLPTRLKTLKIWDCSQLKPLSEMMLHDDMSLEYLAISDCEALSSFPEC LSSFKHLSELNLSNCSALKLFPGVGFPPANLRTLTIYNCKNLKSLPNEMRKLTSLQELTICSCPALKSFPNGDMPPHLTSLEIWDCDNLDGCLSEWNLQS LTCLRDFSIAGGCFSHTVSFPDEKCLLPTNLTSVWIGRLPNLESLSMQLQSLAYLEELEIVDCPKLKSLPRGCLPHALGRFSIRDCPLMTQRCSKLKGVY WPLISHIPCVEIDDGNDM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14470			NB-ARC domain-containing disea...		Potri.001G261300 [exp]	0	1
AT5G13590			unknown protein		Potri.008G047600 [exp]	1.00	0.8372
AT4G32850		PAP(IV), PAP(IV...	poly\(A\) polymerase IV, poly\...		Potri.006G235400 [exp]	5.47	0.8025
AT1G50030		TOR	target of rapamycin (.1.2)		Potri.001G289200 [exp]	8.36	0.7845	Pt-TOR.1
AT5G60410		ATSIZ1, SIZ1	DNA-binding protein with MIZ/S...		Potri.004G210200 [exp]	8.36	0.7660
AT1G21580			Zinc finger C-x8-C-x5-C-x3-H t...		Potri.002G077700 [exp]	8.66	0.8021
AT3G48190		PIG1, ATATM, AT...	pcd in male gametogenesis 1, A...		Potri.015G076650 [exp]	10.19	0.7725
AT1G09730			Cysteine proteinases superfami...		Potri.002G105700 [exp]	11.83	0.7933
AT3G14470			NB-ARC domain-containing disea...		Potri.004G197800 [exp]	18.70	0.7769
AT3G28030		UVR1, UVH3	UV REPAIR DEFECTIVE 1, ULTRAVI...		Potri.017G070500 [exp]	22.44	0.7707
AT5G13590			unknown protein		Potri.010G213800 [exp]	25.92	0.7448

Compare expression of checked genes

Potri.001G261300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.