Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14470 177 / 1e-49 NB-ARC domain-containing disease resistance protein (.1) AT3G14460 128 / 1e-32 LRR and NB-ARC domains-containing disease resistance protein (.1) AT3G50950 101 / 1e-23 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) AT1G10920 87 / 7e-19 LOV1 NB-ARC domain-containing disease resistance protein (.1.2) AT1G59620 87 / 8e-19 CW9 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G43470 86 / 3e-18 HRT, RCY1, RPP8 RECOGNITION OF PERONOSPORA PARASITICA 8, RESISTANT TO CMV\(Y\) 1, HYPERSENSITIVE RESPONSE TO TCV, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G58602 85 / 5e-18 LRR and NB-ARC domains-containing disease resistance protein (.1.2) AT5G48620 84 / 8e-18 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G58390 83 / 2e-17 Disease resistance protein (CC-NBS-LRR class) family (.1) AT3G07040 83 / 2e-17 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G056200 [exp] 376 / 4e-131 AT3G14470 152 / 6e-41 NB-ARC domain-containing disease resistance protein (.1) Potri.001G261300 [exp] 204 / 4e-59 AT3G14470 538 / 2e-170 NB-ARC domain-containing disease resistance protein (.1) Potri.003G200200 [exp] 196 / 5e-56 AT3G14470 634 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.T126706 [exp] 192 / 6e-55 AT3G14470 565 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.001G029300 [exp] 192 / 8e-55 AT3G14470 676 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.001G261600 [exp] 191 / 3e-54 AT3G14470 628 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.001G379700 [exp] 181 / 1e-51 AT3G14470 572 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.T126506 [exp] 182 / 2e-51 AT3G14470 575 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.T126306 [exp] 178 / 5e-50 AT3G14470 585 / 0.0 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005321 [exp] 193 / 6e-55 AT3G14460 607 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039540 [exp] 177 / 1e-49 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10026109 [exp] 170 / 6e-47 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10026132 [exp] 168 / 2e-46 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10024173 [exp] 163 / 9e-45 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039509 [exp] 162 / 2e-44 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10002736 [exp] 138 / 3e-37 AT3G14470 317 / 1e-98 NB-ARC domain-containing disease resistance protein (.1) Lus10016316 [exp] 140 / 1e-36 AT3G14470 494 / 6e-156 NB-ARC domain-containing disease resistance protein (.1) Lus10007261 [exp] 135 / 4e-35 AT3G14460 654 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10011278 [exp] 124 / 3e-31 AT3G14470 356 / 1e-105 NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Potri.001G261500.1 pacid=42789230 polypeptide=Potri.001G261500.1.p locus=Potri.001G261500 ID=Potri.001G261500.1.v4.1 annot-version=v4.1 ATGCACAAGAGAAACAATTCACAATTCAAAGCTTCACAAGAAAGCATGACCGAAGAGCCTCAAGCTGCAGGCACAAGTTTGGTAGGGAAATTGATCTGTT GTTGTTTGTTAAATCCAAGTCCTGTTATGGATACCAGGAATGAGGAAATTAGTTCAAGATCAAGAGATGTGGAAAACCGTGCTTGTGGAGAGAGGCACCA TAGATCAGCAGGTAAAAGAACTCCCACAACTTCTTTGCTTGATAGATCTAAGGTTTATGGTAGAAAGAAGGACAAAGAGTTCATTCTTGAATTGTTACTG GAGAGAGAAGTAGCTAGCAATGGTAGAGTTTGTGTGGTTGCCATAGGTGGGGAGGAAGGAGTTGGCAAGACCACTCTAGCCCAGCTTGTGTACAACGATT CCACAGTGGCCAACGCTTTTGATTTGAGAGCTTGGGTTTTTGATTCAGAAGATTTTGATGTGCGGAGCATAACAGGGACAATCCTCCAGGAAGTTACCAA GGATCAGGCTTGTAAGCTCAGTGGAGATTTGAATTTTCTTCAGGTGAAGCTAAGAGAGAGACTTTCTGGAAAGAGAAGTTTAATCGTGTTAGATGATGCT TGCAATGTGGGCTATGACCAATGGGATCTTCTACGCCAACCCTTTGCTGGTTCTGAAGTTAAAATAGTTGTCACCACGCGAAACAACAGTGTCCCACGAA TCATGGCTGCCATTTCCACTCGCCATCTAGAGGTGTTATCAGATGACGATTGTCTTTCAGTGTTTTTAGATCATGCACCGCCAGAACTGAAGTTCGTCGA CGCAGATCCGAAGCAGCAAGCAATAGTGGCAAAAATAGCAAGCAAATGTAAAGGCTTACCACAGGCTGCAAAATATCTGGGGGGAAGACTGCGCTCTGCT CACTGTACTCAATGGGAGAAGATATATATATCGAATTGTGAGATATATATTTGA
AA sequence Show only first row Show all	>Potri.001G261500.1 pacid=42789230 polypeptide=Potri.001G261500.1.p locus=Potri.001G261500 ID=Potri.001G261500.1.v4.1 annot-version=v4.1 MHKRNNSQFKASQESMTEEPQAAGTSLVGKLICCCLLNPSPVMDTRNEEISSRSRDVENRACGERHHRSAGKRTPTTSLLDRSKVYGRKKDKEFILELLL EREVASNGRVCVVAIGGEEGVGKTTLAQLVYNDSTVANAFDLRAWVFDSEDFDVRSITGTILQEVTKDQACKLSGDLNFLQVKLRERLSGKRSLIVLDDA CNVGYDQWDLLRQPFAGSEVKIVVTTRNNSVPRIMAAISTRHLEVLSDDDCLSVFLDHAPPELKFVDADPKQQAIVAKIASKCKGLPQAAKYLGGRLRSA HCTQWEKIYISNCEIYI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14470			NB-ARC domain-containing disea...		Potri.001G261500 [exp]	0	1
AT3G57450			unknown protein		Potri.009G058500 [exp]	6.00	0.8744
AT5G44210	AP2_ERF	AtERF9, ATERF-9	ERF DOMAIN PROTEIN- 9, erf dom...		Potri.011G057000 [exp]	7.07	0.8725
AT2G14960		GH3.1	Auxin-responsive GH3 family pr...		Potri.001G298300 [exp]	7.54	0.8946	3
AT5G36930			Disease resistance protein (TI...		Potri.019G019053 [exp]	8.71	0.8737
AT3G48270		CYP71A26	"cytochrome P450, family 71, s...		Potri.016G137600 [exp]	10.58	0.8793	CYP71AN3
AT4G27290			S-locus lectin protein kinase ...		Potri.001G413700 [exp]	10.77	0.8374
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Potri.001G112100 [exp]	12.40	0.8674
AT5G13220	ZIM	JAS1, TIFY9, JA...	TIFY DOMAIN PROTEIN 9, JASMONA...		Potri.001G062500 [exp]	17.83	0.8690
AT1G53440			Leucine-rich repeat transmembr...		Potri.001G385600 [exp]	19.89	0.8495
AT3G18670			Ankyrin repeat family protein ...		Potri.006G062900 [exp]	20.78	0.8561

Compare expression of checked genes

Potri.001G261500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.