Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	RGA.64
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14470 627 / 0 NB-ARC domain-containing disease resistance protein (.1) AT3G14460 546 / 7e-170 LRR and NB-ARC domains-containing disease resistance protein (.1) AT3G50950 212 / 2e-56 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) AT1G53350 197 / 2e-51 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G58848 189 / 1e-48 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G59218 189 / 1e-48 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G58400 187 / 3e-48 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G58807 187 / 6e-48 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT5G35450 186 / 8e-48 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G59124 178 / 2e-45 Disease resistance protein (CC-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G194800 [exp] 1296 / 0 AT3G14470 622 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.001G261300 [exp] 1026 / 0 AT3G14470 538 / 2e-170 NB-ARC domain-containing disease resistance protein (.1) Potri.004G196100 [exp] 907 / 0 AT3G14470 647 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.001G029300 [exp] 762 / 0 AT3G14470 676 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.007G137101 [exp] 750 / 0 AT3G14470 616 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.001G025400 [exp] 713 / 0 AT3G14470 558 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.017G015600 [exp] 697 / 0 AT3G14470 591 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.005G007001 [exp] 695 / 0 AT3G14470 647 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.003G200500 [exp] 676 / 0 AT3G14470 594 / 0.0 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005321 [exp] 1119 / 0 AT3G14460 607 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10026109 [exp] 1009 / 0 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10026132 [exp] 996 / 0 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039509 [exp] 719 / 0 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039540 [exp] 701 / 0 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10024173 [exp] 683 / 0 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10007261 [exp] 640 / 0 AT3G14460 654 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10016316 [exp] 484 / 8e-149 AT3G14470 494 / 6e-156 NB-ARC domain-containing disease resistance protein (.1) Lus10004126 [exp] 384 / 1e-114 AT3G14470 353 / 6e-106 NB-ARC domain-containing disease resistance protein (.1) Lus10004127 [exp] 378 / 6e-113 AT3G14470 350 / 5e-105 NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Potri.001G261600.1 pacid=42789243 polypeptide=Potri.001G261600.1.p locus=Potri.001G261600 ID=Potri.001G261600.1.v4.1 annot-version=v4.1 ATGACTGTTGTAGAAGCTATTACCTCTGCTATTCTTCAGCCTTTGTTCGAAAAGTTGGCTTCTGCTAGTTTTCTTAAGTTTGCTAGCAAAAAGGAAAAGG AAATTGACGGTGAACTTAAGAAATGGGAATTAAGGTTGTTGGAGATTCGCGCGGTTCTGACTGATGCCGAAGAGAAACAAATAACTAACCAGGCCGTCAA ATTATGGCTTAACAATCTCCGAGATTTGGCATATGATGTCCAGGATGTCTTGGAAGAGTTTGAAAATGAAGCTTGGTCTCAAACTTACAGCTACAAGAGG GGGAAGAGTAAATTAGGCAAGAATCTGGTCCCAACTTGTTTTTCTGCTGGTATTGGCAAGATGGGGTGGTCCAAGCTAGAGGAGATCACTTCGAGATTAC AAGAGATTGTTGCAGAAAAGGATCTCTTGGACTTGAGCGAGTGGAGTTTGAGTAGATTCAATGAAAGACTGCCCACAACGTCGTTGATGGAAGAAAAACC ACGTGTCTATGGGAGGGGAAAGGATAAGGAGGTTCTGGTTGAATTGTTGATGAGAGGTGGTGAAGCAGCAAATGGGTCGCCGTTCTCTGTGATTTCAATT ATTGGTTTTGGAGGTGTCGGCAAAACAACTCTTGCGCAGCTAGTGTATAATGACGAGAGTGTGGAGTTTGATTATAAAGCATGGGTTTGTGTTTCTGATG ATTTTGATGTGCTTAGGATAACCAAAACAATTTTAAGTTTTGATAGTTCTGCTGCGGGATGTGATTTAAATTTGCTTCAAGTGCAGCTGAAGGAGAAGCT GTCTGGCAAGAAGTTTTTGATTGTTTTAGATGATGTTTGGAGTGAGAACTACGAGGACTGGACTGCTCTTTGTAGCCCATTTGCCAGCGGGGCACGAGGA AGCAAAGTTATTATCACCACTCGTAACGAAGGAGTCTCATTACTGACGGGTTCAATTTATGCTTATGCACTGAAGGAGCTGTCGGATGATGATTGTCTGT TGCTATTTGCCAAACATGCTTTAGATGCAAGTAATTTTGATGATTATCCAGATTTGAAAGAAATAGGCGAAGAGATAGTTAAAAGGTGCAGGGGATTACC TTTGGCAGCAAAGACGCTTGGAGGCCTACTGCGTGGTAAACCGAATTCTAAAGAGTGGAAGGCTGTATTGAATAGCAAAATGTGGGATTTACCAGAAGAG AATAGTGGGATCCTTCCAGCTCTGAGATTGAGCTACCATCACCTTCCTTCTCATTTAAAGCAGTGCTTTGCATATTGCGCAATTTTTCCAAAGGACTACG AATTTGACAAGAATGAATTGGTTTCGTTGTGGATGGCAGAGGGTTTTCTGCAGCAACCAAAGGAAAAGAAACAGATGAAAGACATAGGCAAGGAATACTT TCATGATTTATTATCAAGATCCTTCTTTCAGCAGTCCAGTGCCAACAATGTCCGGTATGTTATGCATGACCTAATAAGTGAACTAGCTCAGTTTGTTAGC GGAGAAGTATGCTTTCATTTGGGTGATAAGCTTGAGGATTCACCATCGCATGCAAAGGTTCGCCATTCATCATTCACTCGTCACCGTTATGACATCTCCC AAAGGTTTGAAGTCTTTTATGAGATGAAAAGTTTACGAACTTTCTTACCATTGCCAATTTTTTCACCACCATATAACCACTTGACCAGTAAGGTGTTGCA TGACTTGGTTCCAAACTTAAAACGTTTGGCTGTGCTATCTCTAGCTGGTTATTGTTTAGTAGAGCTGCCAAGTTCTATTTGTGCATTAAAGCATTTACGG TACCTTAACTTGTCTTATACTGAAATTGAAGTGTTACCTGAATCACTATGTGAAGTATTTCGGCTGCAGACGCTGGGATTGAGGGGTTGCAAGAAACTTA TTAAGTTACCTATAGGCATTGACAACCTAATTGACTTGCAGTACCTTGACATTAGCGGCACAGATAGTTTGCAAGAGATGCCACCTCAGATAGGTAATTT GACAAACCTCCATACCTTGCCAAAGTTTATCATGGGAAAAGGGCTTGGGATAAGAGAGTTGATGAAACTTTCTCATCTTCAAGGACAACTTAATATCACA GGGCTGCATAATGTGGTGGATGTTCAAGACACGGAGCTTGCCATTCTAAAGGAGAAGAGGGGCCTTAGTGAATTATCCTTGGAATGGATTCATAATGTCA ATGGTTTTCAAAGTGAAGCAAGGGAATTGCAGCTCCTCAACCTTCTAGAACCTCATCAAACTCTACAAAAGCTTTCAATTATGGCATATGGTGGCACAAC ATTCCCATCATGGTTAGGGGATCACTCATTCACTAATATGGTGTGCCTACAACTTCGTGGATGCCATAAAATCACATCATTACCATCACTAGGACAACTA CCTTTACTTAGAGATTTGAGCATAAAAGGCATGGATAAGGTAACGACAGTTGGTGCTGAGTTTTTGGGGGTTGGTTCTTCTGTCAAGGCCTTTCCATCTC TGGAGGGTCTAATAATTGAGGATATGTTGAATTGGAAGCAATGGTCCTGGTCTAACGGATTCAACCAAGAGGAAGTTGGAGACTTTCCTTATCTACGTGA GCTTACAATAATAAATTGTCCCATGTTGGCTGGGAAGTTGCCAAGTCACCTTCCATCTGTGAAAAAACTTTCTATTTGCAATTGCCCGCAGTTAGTAGCC TTACCTGAAATACTTCCATGTCTTTGTGAATTGATTGTTGAAGGGTGTAACGAGGCAATTCTAAACCATAAGTCTTTGCCCTCCCTTACTACTTTAAAAG TTGGGAGCATCACTGGCTTTTTTTGTTTACGTAGTGGTTTTTTACAAGCCATGGTGGCACTTCAAGATCTGGAAATTGAAAACTGCAATGATTTGATGTA CCTGTGGCTAGATGGAACTGATTTACATGAACTTGCAAGTATGAAGCATTTAGAGATCAAGAAGTTCGAGCAGCTTGTGTCATTAGTTGAGCTTGAGAAA TTTGGTGACCTGGAACAGCTGCCAAGTGGGTTGCAGTTCCTTGGTTCACTCAGAAATTTGAAAGTTGATCATTGCCCAAAACTAGTGTCGTTTCCAGGAG GTTTGCCATACACTCTACAACGTCTTGAGATTTCACGGTGTGATTCGCTGAAGTCATTGCCTGATGGGATGGTGATAACGATGAATGGCCGTAAGAGCAG CCAGTGCCTTCTTGAAGAGTTGCTAATTAGTTGGTGTCCATCTCTCAAGTCCATTCCAAGAGGAATGTTGCCCATCACACTGAAGTCATTGGCAATTTCA TGGTGCAAAAATCTCAAGAATCTACATGGGGGAATTGTGTATGATGGCGGTGATAGAACGGAGTTGTCTCGTCTTGAGCATTTGACCATAGAAGGTCTAC CTCTCTTGCCCTTCCCAGCTTTTGAATTTCCTGGGTCTCTTAAGACGCTTGAAATTGGCTATTGCACAACGCAGTCACTAGAGTCCTTATGTGACCTATC CCATCTCACTGAGCTGGAAATAAGTGGGTGTTCTATGTTAGAATCATTCCCAGAAATGGGATTGATCACTCCAAATCTTATTTCTTTAAGCATATGGAAA TGTGAGAATTTGAGGTCTCTACCCGATCATATGGACTGCCTAGTTTCTCTTCAAGAGTTGAGTGTATATCATTGTCACAGTCTTGTTTCTTTTTCAAAAG GGGGTTTGCCTCCAAACTTAATTGAATTTGAGATCCATTATTGTGAGAATGTCACAGAGTCAATGTTAGACTGGGGACTCTACACACTCATCTTTCTTAA ACGACTTGTAATTGAATGCACAAGTCCTTGTACAAATATGGTTTCCTTTCCCGATGATGAGGGTCAACTTCTTCCCCCTTCACTAACCTCTCTTTACATC TTGAGCCTCAAGGGTCTGAAGTCCATATCAAAGGGCCTCAAACGTCTCATGTCTCTTGAAATTTTAATGATTTCAGACTGCCCTAAACTCCGTTTCTTGC CTAAGGAAGGCTTCCCTGCTACGCTTGGGTCCCTGCATATTGAATTTTGCCCCCTTCTGAAAAAACAATGCTCAAGAAAGAATGGACGTTATGGGTCCAT GATTGCCTTCATTCCCTATGTAATACTGGATGTTCGTTTTCTATAA
AA sequence Show only first row Show all	>Potri.001G261600.1 pacid=42789243 polypeptide=Potri.001G261600.1.p locus=Potri.001G261600 ID=Potri.001G261600.1.v4.1 annot-version=v4.1 MTVVEAITSAILQPLFEKLASASFLKFASKKEKEIDGELKKWELRLLEIRAVLTDAEEKQITNQAVKLWLNNLRDLAYDVQDVLEEFENEAWSQTYSYKR GKSKLGKNLVPTCFSAGIGKMGWSKLEEITSRLQEIVAEKDLLDLSEWSLSRFNERLPTTSLMEEKPRVYGRGKDKEVLVELLMRGGEAANGSPFSVISI IGFGGVGKTTLAQLVYNDESVEFDYKAWVCVSDDFDVLRITKTILSFDSSAAGCDLNLLQVQLKEKLSGKKFLIVLDDVWSENYEDWTALCSPFASGARG SKVIITTRNEGVSLLTGSIYAYALKELSDDDCLLLFAKHALDASNFDDYPDLKEIGEEIVKRCRGLPLAAKTLGGLLRGKPNSKEWKAVLNSKMWDLPEE NSGILPALRLSYHHLPSHLKQCFAYCAIFPKDYEFDKNELVSLWMAEGFLQQPKEKKQMKDIGKEYFHDLLSRSFFQQSSANNVRYVMHDLISELAQFVS GEVCFHLGDKLEDSPSHAKVRHSSFTRHRYDISQRFEVFYEMKSLRTFLPLPIFSPPYNHLTSKVLHDLVPNLKRLAVLSLAGYCLVELPSSICALKHLR YLNLSYTEIEVLPESLCEVFRLQTLGLRGCKKLIKLPIGIDNLIDLQYLDISGTDSLQEMPPQIGNLTNLHTLPKFIMGKGLGIRELMKLSHLQGQLNIT GLHNVVDVQDTELAILKEKRGLSELSLEWIHNVNGFQSEARELQLLNLLEPHQTLQKLSIMAYGGTTFPSWLGDHSFTNMVCLQLRGCHKITSLPSLGQL PLLRDLSIKGMDKVTTVGAEFLGVGSSVKAFPSLEGLIIEDMLNWKQWSWSNGFNQEEVGDFPYLRELTIINCPMLAGKLPSHLPSVKKLSICNCPQLVA LPEILPCLCELIVEGCNEAILNHKSLPSLTTLKVGSITGFFCLRSGFLQAMVALQDLEIENCNDLMYLWLDGTDLHELASMKHLEIKKFEQLVSLVELEK FGDLEQLPSGLQFLGSLRNLKVDHCPKLVSFPGGLPYTLQRLEISRCDSLKSLPDGMVITMNGRKSSQCLLEELLISWCPSLKSIPRGMLPITLKSLAIS WCKNLKNLHGGIVYDGGDRTELSRLEHLTIEGLPLLPFPAFEFPGSLKTLEIGYCTTQSLESLCDLSHLTELEISGCSMLESFPEMGLITPNLISLSIWK CENLRSLPDHMDCLVSLQELSVYHCHSLVSFSKGGLPPNLIEFEIHYCENVTESMLDWGLYTLIFLKRLVIECTSPCTNMVSFPDDEGQLLPPSLTSLYI LSLKGLKSISKGLKRLMSLEILMISDCPKLRFLPKEGFPATLGSLHIEFCPLLKKQCSRKNGRYGSMIAFIPYVILDVRFL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14470			NB-ARC domain-containing disea...		Potri.001G261600 [exp]	0	1	RGA.64
AT5G40820		ATATR, ATRAD3, ...	ARABIDOPSIS THALIANA ATAXIA TE...		Potri.004G179000 [exp]	2.82	0.8878
AT2G40770			zinc ion binding;DNA binding;h...		Potri.019G060900 [exp]	3.87	0.8940
AT2G17930			Phosphatidylinositol 3- and 4-...		Potri.007G057900 [exp]	4.89	0.8934
AT1G03610			Protein of unknown function (D...		Potri.017G152601 [exp]	5.91	0.8812
AT4G27190			NB-ARC domain-containing disea...		Potri.001G426200 [exp]	9.00	0.8769
AT4G27220			NB-ARC domain-containing disea...		Potri.011G124000 [exp]	9.53	0.8718
AT2G46020		CHA2, ATBRM, CH...	CHROMATIN REMODELING 2, ARABID...		Potri.014G086500 [exp]	10.48	0.8735
AT4G38760			Protein of unknown function (D...		Potri.009G130000 [exp]	11.22	0.8674
AT1G72300			Leucine-rich receptor-like pro...		Potri.003G074000 [exp]	11.83	0.8467
AT2G18220			Noc2p family (.1)		Potri.003G213450 [exp]	12.00	0.8791

Compare expression of checked genes

Potri.001G261600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.