Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08500 214 / 2e-70 AtENODL18 early nodulin-like protein 18 (.1) AT3G17675 49 / 1e-07 Cupredoxin superfamily protein (.1) AT5G15350 48 / 9e-07 AtENODL17 early nodulin-like protein 17 (.1) AT3G27200 47 / 1e-06 Cupredoxin superfamily protein (.1) AT5G26330 47 / 3e-06 Cupredoxin superfamily protein (.1) AT2G25060 45 / 1e-05 AtENODL14 early nodulin-like protein 14 (.1) AT4G31840 44 / 2e-05 AtENODL15 early nodulin-like protein 15 (.1) AT2G31050 42 / 8e-05 Cupredoxin superfamily protein (.1) AT3G20570 42 / 0.0001 AtENODL9 early nodulin-like protein 9 (.1) AT5G07475 40 / 0.0004 Cupredoxin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G067300 [exp] 345 / 7e-122 AT1G08500 207 / 2e-67 early nodulin-like protein 18 (.1) Potri.002G150600 [exp] 121 / 8e-34 AT1G08500 97 / 2e-24 early nodulin-like protein 18 (.1) Potri.014G072700 [exp] 112 / 2e-30 AT1G08500 92 / 1e-22 early nodulin-like protein 18 (.1) Potri.006G259000 [exp] 57 / 4e-10 AT5G26330 144 / 6e-44 Cupredoxin superfamily protein (.1) Potri.006G259101 [exp] 56 / 9e-10 AT5G26330 142 / 2e-43 Cupredoxin superfamily protein (.1) Potri.002G161300 [exp] 55 / 2e-09 AT5G26330 146 / 5e-45 Cupredoxin superfamily protein (.1) Potri.002G156100 [exp] 54 / 5e-09 AT5G26330 138 / 1e-41 Cupredoxin superfamily protein (.1) Potri.002G156401 [exp] 54 / 5e-09 AT5G26330 138 / 1e-41 Cupredoxin superfamily protein (.1) Potri.001G268700 [exp] 53 / 2e-08 AT5G26330 138 / 6e-42 Cupredoxin superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036067 [exp] 228 / 3e-75 AT1G08500 221 / 1e-72 early nodulin-like protein 18 (.1) Lus10009231 [exp] 115 / 2e-30 AT1G08500 117 / 4e-31 early nodulin-like protein 18 (.1) Lus10037998 [exp] 107 / 9e-29 AT1G08500 101 / 1e-26 early nodulin-like protein 18 (.1) Lus10007026 [exp] 54 / 5e-09 AT2G32300 96 / 4e-25 uclacyanin 1 (.1) Lus10006680 [exp] 54 / 7e-09 AT5G26330 98 / 6e-26 Cupredoxin superfamily protein (.1) Lus10025752 [exp] 54 / 1e-08 AT5G20230 101 / 1e-26 SENESCENCE ASSOCIATED GENE 14, BLUE COPPER BINDING PROTEIN, blue-copper-binding protein (.1) Lus10035911 [exp] 54 / 1e-08 AT5G20230 95 / 3e-24 SENESCENCE ASSOCIATED GENE 14, BLUE COPPER BINDING PROTEIN, blue-copper-binding protein (.1) Lus10007025 [exp] 52 / 3e-08 AT2G32300 101 / 3e-27 uclacyanin 1 (.1) Lus10007028 [exp] 52 / 3e-08 AT5G26330 92 / 8e-24 Cupredoxin superfamily protein (.1) Lus10041570 [exp] 52 / 5e-08 AT3G27200 167 / 2e-53 Cupredoxin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [poplar] [flax] CU_oxidase PF02298 [poplar] [flax] Cu_bind_like Plastocyanin-like domain
Representative CDS sequence Show only first row Show all	>Potri.001G273000.1 pacid=42789278 polypeptide=Potri.001G273000.1.p locus=Potri.001G273000 ID=Potri.001G273000.1.v4.1 annot-version=v4.1 ATGCAACAGAGAAGGTACAGCAGACTATGCCTTCTTTCCCTCTCATTCTCTTGTCTTCTTCTTCTTCTTCCATCTTTCTTAGGACCTGTCGATGCTTACA AGAACTACACGGTGGGTGACTCCTTGGGCTGGTACGACGCCACTGTCAAGTCTAATGTCAATTACCAAAAATGGGCTGATGGCAAGAACTTCAGCTTGGG AGATTTCCTCATTTTCAACACGGATAGCAATCATTCAGTGGTTCAAACATACAATTTCACCACATTCAAGTCGTGCGATTATGACAATTCTGAAGGAAAT GAAACCGTGGAATGGTCGTCCACCAATCCATCCAACACTCTCACACAGGCAGTCACAGTGGCAGTTCCTCTAGTCAAGGAAGGGCCGACATTTTTCTTCT CTGGGTACTACGACGGGGAGCAATGTCAGAATGGCCAGCATTTCAAAATAACCGTGTCTCATGGAAAAGGGCTACCGGATAGCCTGAAAGATCCATCCGA TCAGGCCCCGGCTCCAAATGCTGCCGATTATGGCTCGACACCGGATACAGTTGTGCCCTTTGACTTCAATAACCCTCACGATCAAGACACTGATGTTAAG AAGGATTCTGGATCTATTTCGTTGTATGTGAAGAATTTAGACATGAAACTGAATGGGATTTTGCTTTCGTTAGGGATTCTCTACATGTTTTGA
AA sequence Show only first row Show all	>Potri.001G273000.1 pacid=42789278 polypeptide=Potri.001G273000.1.p locus=Potri.001G273000 ID=Potri.001G273000.1.v4.1 annot-version=v4.1 MQQRRYSRLCLLSLSFSCLLLLLPSFLGPVDAYKNYTVGDSLGWYDATVKSNVNYQKWADGKNFSLGDFLIFNTDSNHSVVQTYNFTTFKSCDYDNSEGN ETVEWSSTNPSNTLTQAVTVAVPLVKEGPTFFFSGYYDGEQCQNGQHFKITVSHGKGLPDSLKDPSDQAPAPNAADYGSTPDTVVPFDFNNPHDQDTDVK KDSGSISLYVKNLDMKLNGILLSLGILYMF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G08500		AtENODL18	early nodulin-like protein 18 ...		Potri.001G273000 [exp]	0	1
AT3G26935			DHHC-type zinc finger family p...		Potri.012G103300 [exp]	2.82	0.6606
AT2G38430			unknown protein		Potri.019G029800 [exp]	5.65	0.6400
AT4G38280			unknown protein		Potri.009G166100 [exp]	8.24	0.6290
AT2G45400		BEN1	NAD(P)-binding Rossmann-fold s...		Potri.002G147701 [exp]	11.35	0.6302
AT3G17210		ATHS1	A. THALIANA HEAT STABLE PROTEI...		Potri.010G037200 [exp]	14.07	0.6187
AT5G05800			unknown protein		Potri.006G116400 [exp]	15.49	0.6210
AT1G09250	bHLH	bHLH149, AIF4	basic helix-loop-helix (bHLH) ...		Potri.005G012400 [exp]	21.16	0.6263
AT5G38630		ACYB-1	cytochrome B561-1 (.1)		Potri.004G103800 [exp]	21.44	0.5645
AT3G63220			Galactose oxidase/kelch repeat...		Potri.002G050600 [exp]	22.44	0.5851
AT4G02340			alpha/beta-Hydrolases superfam...		Potri.013G134800 [exp]	24.18	0.6202

Compare expression of checked genes

Potri.001G273000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.