Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49960 305 / 4e-99 Xanthine/uracil permease family protein (.1) AT5G62890 289 / 4e-93 Xanthine/uracil permease family protein (.1.2.3.4) AT1G60030 274 / 5e-87 ATNAT7 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 7, nucleobase-ascorbate transporter 7 (.1) AT1G10540 271 / 5e-86 ATNAT8 nucleobase-ascorbate transporter 8 (.1) AT5G49990 264 / 3e-83 Xanthine/uracil permease family protein (.1) AT2G34190 234 / 4e-72 Xanthine/uracil permease family protein (.1) AT1G65550 234 / 8e-72 Xanthine/uracil permease family protein (.1) AT2G05760 218 / 8e-66 Xanthine/uracil permease family protein (.1) AT2G26510 192 / 1e-55 PDE135 pigment defective embryo 135, Xanthine/uracil permease family protein (.1.2) AT5G25420 164 / 2e-46 Xanthine/uracil/vitamin C permease (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G086800 [exp] 438 / 3e-151 AT1G49960 727 / 0.0 Xanthine/uracil permease family protein (.1) Potri.008G146400 [exp] 295 / 4e-95 AT1G60030 881 / 0.0 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 7, nucleobase-ascorbate transporter 7 (.1) Potri.012G077400 [exp] 294 / 5e-95 AT5G62890 914 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Potri.015G072600 [exp] 290 / 2e-93 AT5G62890 908 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Potri.010G095500 [exp] 288 / 1e-92 AT1G60030 869 / 0.0 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 7, nucleobase-ascorbate transporter 7 (.1) Potri.014G015100 [exp] 273 / 1e-87 AT1G65550 559 / 0.0 Xanthine/uracil permease family protein (.1) Potri.014G157800 [exp] 230 / 2e-70 AT2G05760 930 / 0.0 Xanthine/uracil permease family protein (.1) Potri.004G058800 [exp] 230 / 3e-70 AT2G34190 927 / 0.0 Xanthine/uracil permease family protein (.1) Potri.011G068200 [exp] 229 / 5e-70 AT2G34190 928 / 0.0 Xanthine/uracil permease family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033773 [exp] 308 / 4e-100 AT1G49960 695 / 0.0 Xanthine/uracil permease family protein (.1) Lus10004228 [exp] 291 / 7e-94 AT5G62890 972 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10010707 [exp] 291 / 2e-93 AT5G62890 916 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10043460 [exp] 288 / 4e-92 AT5G62890 892 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10029191 [exp] 285 / 2e-91 AT5G62890 914 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10042138 [exp] 284 / 2e-90 AT5G62890 932 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10034125 [exp] 274 / 7e-87 AT1G49960 944 / 0.0 Xanthine/uracil permease family protein (.1) Lus10036355 [exp] 267 / 2e-84 AT1G65550 748 / 0.0 Xanthine/uracil permease family protein (.1) Lus10014777 [exp] 260 / 1e-81 AT1G65550 751 / 0.0 Xanthine/uracil permease family protein (.1) Lus10029238 [exp] 232 / 3e-71 AT2G34190 926 / 0.0 Xanthine/uracil permease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF00860 [poplar] [flax] Xan_ur_permease Permease family
Representative CDS sequence Show only first row Show all	>Potri.001G292600.2 pacid=42791517 polypeptide=Potri.001G292501.1.p locus=Potri.001G292600 ID=Potri.001G292600.2.v4.1 annot-version=v4.1 ATGGCAGTTGGAGGCGCTGCTAAAGTTGGTGTGTTCGCACCATTTCCTGTCAAAGACCAGCTCCCTGGCGTTGATTTCTGTGTCTCCAGCTCTCCTTCTT GGCCTGAAGCAATACTACTAGGTTTTCAGCATTACCTAGTGATGCTCGGGACTACTGTGATCATTCCTTCCATATTCGTTCTTTTGATTAGCCGTTTCAA TACATGGTTCGGCACTCGGCTTCCTGTGGTCATTGGAGGATCCTATGCTTTTAGCATCCCCACAATAACCATTTCTTTATCTACTAACAATAGCACTAAT GTCATATTTCTTACTCCACGTCAGGTTAAGTTTAGTTCCCTCCCTCACTTTCTGGCAAAATGTGTTGAAATTGGAATCCTGGCACTCCTTTTCGTGGTCT TCATATCTCAGTTGTATGGGCATATGCCAGCAGTTTTGACTGTGGCTGGTGCATATAATAATAAGCATCCAGACACACAACTTAGCTCTCGTGTTGATCG TGCTGGGCTCATTAGTGCTGCTCCTTGGATAAAGGTTCCATATCCATTTCAATGGGGACGTCCCACTTTTGACGCTGGTGATGTTTTTGCGATGATGGCT GCTTGTTTTGTTGCTATAGTTGAGTCTACTGGTACAATTATTGAGGTATCAAGATATGGGAGTGCCACTCCTCTGCCTCCTTCTGTACTCAGCCGTGGTA TTGGATGGCTGTATTCTTTCCAACCAATTCATGAAAATGCAGGTCTTTTGGGATTAACACGAGTTGGAAGTCGGAGAGTTGTTCAAATATCAGCGGGCTT CATGCTTTTCTTTTCTGTGTTAAGTGCAGAAAATTCGGGACTGTTCTTGCTTCCCATACCATTGCCAATTGTGGCAGCTCTTTACTGTGTCCTCTTTGCC TATGCGGTTCTGCAACTCAATAGCTTCAGAACAAAGTTCATCCTTGGCTTTTCTCTCTTCTTGGGCCTTCCTGTGCCACAGTACTTCAAGGAATACCTTT TGGTTTCTGGTCGTGGCCCTTTCAACGACATAATGCAATTGATCTTCTCCTCTCCAGCAACAGTGGCAATTTTAGTTGCTTGTTTCTTGGACTGCACTCA CAGTCTGGCGCACAGCACAACCCGCCGAGACAGTGGCAGGCACTGGTGGGAGAGGTTCAGATATTTTAGTGGCAGGCACTGGTTTTTCCCTTCATTCTAA
AA sequence Show only first row Show all	>Potri.001G292600.2 pacid=42791517 polypeptide=Potri.001G292501.1.p locus=Potri.001G292600 ID=Potri.001G292600.2.v4.1 annot-version=v4.1 MAVGGAAKVGVFAPFPVKDQLPGVDFCVSSSPSWPEAILLGFQHYLVMLGTTVIIPSIFVLLISRFNTWFGTRLPVVIGGSYAFSIPTITISLSTNNSTN VIFLTPRQVKFSSLPHFLAKCVEIGILALLFVVFISQLYGHMPAVLTVAGAYNNKHPDTQLSSRVDRAGLISAAPWIKVPYPFQWGRPTFDAGDVFAMMA ACFVAIVESTGTIIEVSRYGSATPLPPSVLSRGIGWLYSFQPIHENAGLLGLTRVGSRRVVQISAGFMLFFSVLSAENSGLFLLPIPLPIVAALYCVLFA YAVLQLNSFRTKFILGFSLFLGLPVPQYFKEYLLVSGRGPFNDIMQLIFSSPATVAILVACFLDCTHSLAHSTTRRDSGRHWWERFRYFSGRHWFFPSF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G49960			Xanthine/uracil permease famil...		Potri.001G292600 [exp]	0	1
AT4G17910			transferases, transferring acy...		Potri.003G093300 [exp]	5.00	0.8813
AT2G26540		ATUROS, ATDUF3,...	ARABIDOPSIS THALIANA UROPORPHY...		Potri.014G034700 [exp]	7.74	0.8527
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.001G129400 [exp]	9.48	0.8664	CYP89A27P
AT4G22600			unknown protein		Potri.001G120700 [exp]	9.59	0.8239
AT3G48000		ALDH2A, ALDH2B4	aldehyde dehydrogenase 2A, ald...		Potri.012G078700 [exp]	11.48	0.8641	ALDH1.2
AT2G40316			unknown protein		Potri.008G073200 [exp]	12.32	0.8478
AT5G22030		UBP8	ubiquitin-specific protease 8 ...		Potri.001G214800 [exp]	13.63	0.8767
AT5G11730			Core-2/I-branching beta-1,6-N-...		Potri.010G121900 [exp]	14.14	0.8474
AT5G26594		ARR24	response regulator 24 (.1)		Potri.001G050800 [exp]	20.61	0.8022
AT4G38280			unknown protein		Potri.004G205200 [exp]	21.35	0.8428

Compare expression of checked genes

Potri.001G292600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.