Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19553 679 / 0 Amino acid permease family protein (.1) AT1G31830 498 / 7e-174 Amino acid permease family protein (.1.2) AT5G05630 497 / 3e-173 Amino acid permease family protein (.1) AT1G31820 445 / 6e-153 Amino acid permease family protein (.1) AT3G13620 365 / 9e-122 Amino acid permease family protein (.1) AT1G17120 43 / 0.0005 CAT8 cationic amino acid transporter 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G090300 [exp] 832 / 0 AT3G19553 673 / 0.0 Amino acid permease family protein (.1) Potri.004G178000 [exp] 496 / 3e-173 AT1G31830 637 / 0.0 Amino acid permease family protein (.1.2) Potri.003G103600 [exp] 479 / 2e-166 AT1G31830 694 / 0.0 Amino acid permease family protein (.1.2) Potri.001G007200 [exp] 383 / 5e-129 AT3G13620 567 / 0.0 Amino acid permease family protein (.1) Potri.001G007300 [exp] 363 / 5e-121 AT3G13620 675 / 0.0 Amino acid permease family protein (.1) Potri.001G378500 [exp] 44 / 0.0003 AT1G17120 785 / 0.0 cationic amino acid transporter 8 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040966 [exp] 704 / 0 AT3G19553 694 / 0.0 Amino acid permease family protein (.1) Lus10009849 [exp] 702 / 0 AT3G19553 693 / 0.0 Amino acid permease family protein (.1) Lus10012153 [exp] 496 / 4e-173 AT1G31830 744 / 0.0 Amino acid permease family protein (.1.2) Lus10007593 [exp] 496 / 3e-169 AT1G31830 743 / 0.0 Amino acid permease family protein (.1.2) Lus10003232 [exp] 476 / 4e-165 AT1G31830 687 / 0.0 Amino acid permease family protein (.1.2) Lus10039180 [exp] 367 / 1e-122 AT3G13620 711 / 0.0 Amino acid permease family protein (.1) Lus10034046 [exp] 344 / 2e-113 AT3G13620 641 / 0.0 Amino acid permease family protein (.1) Lus10010512 [exp] 342 / 1e-112 AT3G13620 643 / 0.0 Amino acid permease family protein (.1) Lus10013757 [exp] 0 / 1 AT3G13620 536 / 0.0 Amino acid permease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF00324 [poplar] [flax] AA_permease Amino acid permease
Representative CDS sequence Show only first row Show all	>Potri.001G296100.4 pacid=42793036 polypeptide=Potri.001G296100.4.p locus=Potri.001G296100 ID=Potri.001G296100.4.v4.1 annot-version=v4.1 ATGGGTGAAGAGGGAATGGCAATTGATGCAGAGAACAAAGCTAGAACAAGTCCAAAACTAACTCTATTGCCTCTTATTGCTTTGATATTCTATGATGTAT CTGGGGGTCCATTTGGTGTAGAGGATTCAGTGAGGGCTGGAGGTGGCCCTTTATTGTCTTTGCTCGGTTTCTTACTATTCCCTTTAATTTGGAGCATACC AGAAGCTCTAATCACCGCAGAGCTGGCCACGAGTTTCCCTGAGAATGGTGGATATGTTATTTGGATATCTTCAGCTTTTGGTCCCTTCTGGGGTTTCCAA GAAGGATTTTGGAAATGGTTTAGTGGGGTTGTGGACAATGCCCTTTACCCTGTATTGTTTCTTGATTACTTGAAGCGTTCGTTTCCTATTTTTAACCATT TAATAGCTCGAATTCCAGCTCTTTTAGGCATTACAGTTTCTTTGACATATTTGAATTATAGAGGTCTGCATATTGTTGGATTTTCAGCAGTTTCCCTTGC TGTTTTTTCACTTTGTCCATTTGTTGTAATGAGTTTTCTTTCGATCCCTCGAATCAGTCCTAAGCAATGGCTAGCTGTAGATTTTAAGAAAGTAGAATGG AGAGGATACTTCAATTGCATGTTCTGGAACCTGAATTATTGGGATAAGGCTAGTACTCTAGCAGGTGAGGTTGAAAACCCCAGCAAGACATTTCCAAAGG CACTTTTTGGTGCTCTGATTTTGGTGGTGTCTTCATACTTAATTCCACTTCTTGCGGGCACGGGGGCATTGAAGTCGCCCTCTAGTGAATGGAGTGATGG GTACTTCGCAGAAGTTGGGATGTTGATTGGAGGGGTTTGGCTCAAATGGTGGATCCAAGCAGCTGCTGCTATGTCTAACTTGGGATTGTTTGAAGCAGAA ATGAGTGGTGATGCTTTTCAACTTCTTGGTATGAGCGAGATGGGAATGCTTCCATCTATATTTGCTTCAAGGTCCAAATACGGAACGCCTACCATCAGCA TTTTGTGCTCTGCTACTGGAGTAATCTTCCTCTCTTGGATGAGTTTTCAGGAGATCCTGGAATTTCTGAACTTCTTATATGCTATAGGAATGCTCCTTGA GTTTGCAGCTTTCATAAAATTGAGGATAAAGAAGCCAGAACTTCACAGGCCTTATAAAGTTCCCTTGCAAACACTTGGTGCAACACTGCTTTGCCTGCCT CCTGCAATGTTACTTGTTCTTGTTATGTGCCTGGCTTCTGTCCAGACATTCCTAGTTAGCAGTGTCGTTATTCTGCTGGGGTTCCTCTTATACCCGACTT TAGTTCATGCCAAGGATAGGAAGTGGGCCAAATTTGATACAGATGAACCAGGATTGCCTTCCAGCACATCACTAGAAGAGAACTCGGTTCTGCTACAGCC GCATCAGGAAGTAGCAGATGAGGCTTCAGTCAGCCTTCTTTCAGACTTGTCACCAACAAAACTGGGTCAAGAACGCGGTGAAGTTTTGGTGGAAGGAGTT GTGAAAGAAGAATGA
AA sequence Show only first row Show all	>Potri.001G296100.4 pacid=42793036 polypeptide=Potri.001G296100.4.p locus=Potri.001G296100 ID=Potri.001G296100.4.v4.1 annot-version=v4.1 MGEEGMAIDAENKARTSPKLTLLPLIALIFYDVSGGPFGVEDSVRAGGGPLLSLLGFLLFPLIWSIPEALITAELATSFPENGGYVIWISSAFGPFWGFQ EGFWKWFSGVVDNALYPVLFLDYLKRSFPIFNHLIARIPALLGITVSLTYLNYRGLHIVGFSAVSLAVFSLCPFVVMSFLSIPRISPKQWLAVDFKKVEW RGYFNCMFWNLNYWDKASTLAGEVENPSKTFPKALFGALILVVSSYLIPLLAGTGALKSPSSEWSDGYFAEVGMLIGGVWLKWWIQAAAAMSNLGLFEAE MSGDAFQLLGMSEMGMLPSIFASRSKYGTPTISILCSATGVIFLSWMSFQEILEFLNFLYAIGMLLEFAAFIKLRIKKPELHRPYKVPLQTLGATLLCLP PAMLLVLVMCLASVQTFLVSSVVILLGFLLYPTLVHAKDRKWAKFDTDEPGLPSSTSLEENSVLLQPHQEVADEASVSLLSDLSPTKLGQERGEVLVEGV VKEE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G19553			Amino acid permease family pro...		Potri.001G296100 [exp]	0	1
AT3G13620			Amino acid permease family pro...		Potri.001G007200 [exp]	2.00	0.9176	PtrLAT1
AT3G23600			alpha/beta-Hydrolases superfam...		Potri.007G112700 [exp]	2.23	0.8955
AT5G47650		ATNUDX2, ATNUDT...	ARABIDOPSIS THALIANA NUDIX HYD...		Potri.016G006000 [exp]	3.00	0.9173
AT4G24160			alpha/beta-Hydrolases superfam...		Potri.002G027300 [exp]	3.74	0.8902
AT4G10170			SNARE-like superfamily protein...		Potri.013G094900 [exp]	4.69	0.8846
AT2G17440		PIRL5	plant intracellular ras group-...		Potri.003G090100 [exp]	5.47	0.8854
AT2G19130			S-locus lectin protein kinase ...		Potri.013G121000 [exp]	7.34	0.8671
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Potri.019G003300 [exp]	8.00	0.8998
					Potri.018G123400 [exp]	8.30	0.8702
AT2G47710			Adenine nucleotide alpha hydro...		Potri.002G205275 [exp]	8.48	0.8845

Compare expression of checked genes

Potri.001G296100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.