Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37260 204 / 9e-65 MYB ATMYB73 myb domain protein 73 (.1) AT5G67300 199 / 4e-63 MYB ATMYB44, AtMYBr1 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 44, myb domain protein r1 (.1) AT2G23290 196 / 6e-62 MYB ATMYB70 myb domain protein 70 (.1) AT3G50060 185 / 1e-57 MYB ATMYB77 myb domain protein 77 (.1) AT3G55730 171 / 3e-51 MYB ATMYB109 myb domain protein 109 (.1) AT3G09230 165 / 7e-49 MYB ATMYB1 myb domain protein 1 (.1) AT2G39880 148 / 1e-42 MYB ATMYB25 myb domain protein 25 (.1) AT3G09370 141 / 4e-39 MYB ATMYB3R-3, ATMYB3R3 myb domain protein 3R3, myb domain protein 3r-3 (.1.2) AT1G69560 132 / 7e-37 MYB LOF2, ATMYB105 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) AT1G26780 131 / 7e-37 MYB LOF1, ATMYB117 LATERAL ORGAN FUSION 1, myb domain protein 117 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G096000 [exp] 398 / 2e-142 AT4G37260 222 / 1e-71 myb domain protein 73 (.1) Potri.007G048900 [exp] 225 / 8e-73 AT4G37260 273 / 2e-90 myb domain protein 73 (.1) Potri.002G122600 [exp] 217 / 5e-70 AT4G37260 258 / 6e-85 myb domain protein 73 (.1) Potri.014G022500 [exp] 214 / 6e-69 AT4G37260 226 / 3e-72 myb domain protein 73 (.1) Potri.005G142600 [exp] 204 / 1e-64 AT4G37260 246 / 7e-80 myb domain protein 73 (.1) Potri.008G062700 [exp] 176 / 5e-53 AT3G55730 290 / 7e-95 myb domain protein 109 (.1) Potri.010G195000 [exp] 176 / 1e-52 AT3G55730 295 / 7e-97 myb domain protein 109 (.1) Potri.002G128900 [exp] 168 / 8e-52 AT4G37260 179 / 2e-55 myb domain protein 73 (.1) Potri.008G070900 [exp] 164 / 7e-50 AT4G37260 173 / 2e-52 myb domain protein 73 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014103 [exp] 228 / 5e-75 AT4G37260 213 / 2e-68 myb domain protein 73 (.1) Lus10010260 [exp] 190 / 6e-59 AT5G67300 288 / 5e-96 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 44, myb domain protein r1 (.1) Lus10010238 [exp] 182 / 3e-56 AT4G37260 271 / 4e-90 myb domain protein 73 (.1) Lus10010055 [exp] 182 / 3e-56 AT4G37260 259 / 2e-85 myb domain protein 73 (.1) Lus10007503 [exp] 179 / 5e-56 AT4G37260 182 / 2e-56 myb domain protein 73 (.1) Lus10030336 [exp] 181 / 2e-55 AT4G37260 290 / 1e-96 myb domain protein 73 (.1) Lus10040940 [exp] 175 / 1e-54 AT4G37260 176 / 2e-54 myb domain protein 73 (.1) Lus10028979 [exp] 171 / 1e-52 AT4G37260 181 / 1e-55 myb domain protein 73 (.1) Lus10021762 [exp] 167 / 7e-51 AT2G23290 179 / 8e-55 myb domain protein 70 (.1) Lus10032764 [exp] 164 / 1e-49 AT4G37260 182 / 5e-56 myb domain protein 73 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.001G300200.1 pacid=42791201 polypeptide=Potri.001G300200.1.p locus=Potri.001G300200 ID=Potri.001G300200.1.v4.1 annot-version=v4.1 ATGGATTGTGATCGGGTTAAGGGACCTTGGAGCCCGGAAGAGGACGCGCTATTGAAGCATTTGGTGATAAAACACGGGCCGCGTAGCTGGACAATGATAG CAAGAGCAGTACCAGGTCGGTCCGGGAAATCTTGCAGATTACGATGGTGTAATCAGTTGTCACCGGTGGTAGAGCACAGAGCGTTTACACGAGAAGAAGA TGTGATCATCATAAATGCTCATATCAAGTATGGTAATAAATGGGCTGCCATAGCAAGACTCCTTGATGGACGTACGGACAACGCCATCAAGAATCATTGG AACTCCAAGTTAAAGAGGAAATACGCGGACTTCATTGTACATGGCGGAATGGTCAATGAAGATGGAGTGAAGGATAAATCTGCTAAAACGGTGTCGTCGT CTTCTGTTCTCGAGAGGGCTAATACTCCTTCGGGATCTGAAGTTAGCGATGCTGGGTTACCAGGGACGTCATCGTTGTTGGTACAAGAAAACGTGCCTGT TGTTGAAAGTGGGATTAGTAACAACGCTGACGTTTCGACTGAACTTACGTTGTCCGTTCCAGGGATGAAGTCTGGACAGTTGGGGAGAGATCATGGGGTG GGTAATAAAGGATTGTTAACGGGAGATGCAGAGAAAACGATGACGTTTGGGCCGAAGTTGTTAGCAGTTATGCAGGAGATGATTAGAAAGGAGGTGAGGG ATTACATGGTTGGGATTGGGGGAAAAAGTGGTTAG
AA sequence Show only first row Show all	>Potri.001G300200.1 pacid=42791201 polypeptide=Potri.001G300200.1.p locus=Potri.001G300200 ID=Potri.001G300200.1.v4.1 annot-version=v4.1 MDCDRVKGPWSPEEDALLKHLVIKHGPRSWTMIARAVPGRSGKSCRLRWCNQLSPVVEHRAFTREEDVIIINAHIKYGNKWAAIARLLDGRTDNAIKNHW NSKLKRKYADFIVHGGMVNEDGVKDKSAKTVSSSSVLERANTPSGSEVSDAGLPGTSSLLVQENVPVVESGISNNADVSTELTLSVPGMKSGQLGRDHGV GNKGLLTGDAEKTMTFGPKLLAVMQEMIRKEVRDYMVGIGGKSG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Potri.001G300200 [exp]	0	1
AT5G06790			unknown protein		Potri.006G191100 [exp]	9.74	0.8971
AT3G25490			Protein kinase family protein ...		Potri.013G031501 [exp]	21.79	0.8904
AT2G34500		CYP710A1	cytochrome P450, family 710, s...		Potri.004G131700 [exp]	27.11	0.8877	CYP710.1
ATCG00750		ATCG00750.1, RP...	ribosomal protein S11 (.1)		Potri.010G032501 [exp]	28.87	0.8889
AT5G17690		AtLHP1, LHP1, T...	TERMINAL FLOWER 2, LIKE HETERO...		Potri.019G044400 [exp]	31.81	0.6990
AT5G25280			serine-rich protein-related (....		Potri.006G258600 [exp]	33.98	0.7584
AT5G48610			unknown protein		Potri.017G058701 [exp]	35.32	0.8846
					Potri.008G224328 [exp]	38.07	0.8505
ATCG01310		ATCG01310.1, RP...	ribosomal protein L2 (.1)		Potri.011G074401 [exp]	39.24	0.8853
ATCG01310		ATCG01310.1, RP...	ribosomal protein L2 (.1)		Potri.013G136466 [exp]	44.11	0.8845

Compare expression of checked genes

Potri.001G300200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.