Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17680 595 / 0 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G36930 569 / 0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT4G12010 546 / 1e-173 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G27170 504 / 2e-156 transmembrane receptors;ATP binding (.1.2) AT5G18360 473 / 3e-149 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G11170 472 / 6e-147 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G49140 465 / 2e-145 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G46450 462 / 4e-143 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G44510 462 / 4e-142 TAO1 target of AVRB operation1 (.1) AT5G18350 463 / 5e-142 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G002500 [exp] 1687 / 0 AT5G17680 587 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069200 [exp] 724 / 0 AT5G17680 590 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G104301 [exp] 714 / 0 AT5G17680 566 / 1e-178 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.013G098550 [exp] 710 / 0 AT5G17680 593 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G001602 [exp] 708 / 0 AT5G36930 778 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G001600 [exp] 700 / 0 AT5G36930 721 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.008G220200 [exp] 696 / 0 AT5G36930 560 / 3e-180 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.012G135700 [exp] 690 / 0 AT5G36930 640 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.013G097300 [exp] 686 / 0 AT5G17680 598 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029722 [exp] 618 / 0 AT5G17680 608 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10011104 [exp] 605 / 0 AT5G17680 574 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10039850 [exp] 588 / 0 AT5G36930 573 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10018616 [exp] 587 / 0 AT5G36930 578 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10041060 [exp] 570 / 0 AT5G17680 641 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10005171 [exp] 570 / 0 AT1G27170 576 / 0.0 transmembrane receptors;ATP binding (.1.2) Lus10003749 [exp] 567 / 3e-180 AT5G17680 517 / 5e-161 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10030839 [exp] 494 / 7e-154 AT4G12010 552 / 7e-176 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10026201 [exp] 484 / 2e-150 AT5G17680 511 / 1e-160 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10011741 [exp] 481 / 3e-149 AT5G36930 540 / 4e-172 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain CL0173 [poplar] [flax] STIR PF13676 [poplar] [flax] TIR_2 TIR domain
Representative CDS sequence Show only first row Show all	>Potri.001G307300.2 pacid=42788562 polypeptide=Potri.001G307300.2.p locus=Potri.001G307300 ID=Potri.001G307300.2.v4.1 annot-version=v4.1 ATGGTTTCTTCATCTAATTGTTGGAAGTATGATGTTTTCTTGAGTTTCAGAGGCCAAGAGACCCGTAATACTTTTACAGCCCATCTATATCATGCTCTGT GCAACAAAGGAATCAATGCTTTCATTGATGACAAGCTTGAGAGGGGAGAACACATTACTTCTCAACTCTACCGGGTTATTGAAGACTCAAGGATTTCTCT TCTAATATTCTCTGAAAACTATGCAAGGTCTATTTATTGTTTGGATGAGCTGGTGAAGATACTTGAATGTAAAGAATCAAAGGGGCAAGTTGTTTTTCCT GTGTTTTATAATGTGGATCCTTCAGATGTCGAAGAACAAAATGGAAGTTTCGGAGAGGCCTTGCTTTTCCATGAAACCTATTGGGGGATTGATACAGAGA GGGTGCAGAAATGGAGGGAAGCTCTGACAAAAGCAGCTCAATTGTCTGGATGGCATTTAAACAATGGGAATGAGGCTAAATTTATTTGGAGAATTGTTGA AAAGGTGTTGTCACAATTGAATCACACATCCTTGCACATTGCTGCATACCAAGTTGGATTGAATAACCATATTGAAGAAATAAATCATATGCTAAATACC AGGTCAGATGGTGTTTGTATGGTAGGACTCTGTGGAATTGGTGGAGTTGGTAAGACAACCATTTCGAAAGCTGTTTACAACTTAATTGCTAATCAATTTG AAGGCAGCTGTTTCCTTTCAAATGTCAGAGAAATCTCAAAGCAACATGGTCTTCTTCGTCTACAAGAGACACTTCTTTATGAGATCCTAGGGGATAAAAA TTTAGTCCTGGGAAGTGTTGATAGAGGAATTAATGTGATAAGGGATAGGCTTCGCAATAAAAAGGTGCTTATTGTCATTGATGATGCGGATAATTTAGAC CAACTTAAGCAATTAGCTGGAGAGCCTGACTGGTTTGGCTTGGGAAGTAGAGTTATTATAACAACTAGAGATGAACATCTGCTAGTTGCTCATGGAGTGG AAAGATTATATAAGGTGAAGGAATTATGTCCTGATGATGCTCTTATGCTTTTTTCTTGGAATGCCTTTAGGAATCCCCATCCTTCTGAAGATCATTTGGA GGTTTCACTTCGGGCAGTGAGATACGCCCAGGGCCTTCCGCTGGCTCTTGTCGTGTTGGGCTCTTTTCTGTATGGAAGAAGCATACGTGAATGGGAAAGT GAATTGGATAGATTAAAAAAAATTCCCAATAAACAAATTTACGAAGTGCTTAAAATAAGTTTTGATGGACTTGAGTATCATGAGAAGACCATTTTTCTGG ACATTGCATGCTTCTTTAAAGGGCAAGAAAAAGATTATGTGATAAAAATACTAGATGCTTGTGATGTCAACCCTGATATTGGCATACAGGTTCTCATAGA GAAGTCTTTGATATATATTGAAAACAATAAGATCCAGATGCACGAATTGCTTCAATCAATGGGTAGGCAAATTGTTCACCAAGAATCTCCTAATATACCT GGAAGACGCAGCAGGCTCTGGTTTCATGAGGATGTTCTCCATGTGCTGACAGAAAATATCGGATCCTGTGAAATTGAAGGCATAATTCTAGACTTGCCTA AAGCAGAAAAGTTGTGCTTGAGTGCTGATACTTTCACAAAGATGAAAAGGCTTAGGATACTTATTGTCCATAATGTACACGTTTTCGGAGTCCTGGAAAA TCTACCCAATGAGTTAAGGTGGCTTGAATGGCCTGAATGTCCCATAGAGTCAATGCCATCAACGTTTCATGCTAGGAAACTCGTTGTACTTAACATGCAA CGCAGTTGCATCAGACAGTTAGGGGAAGGCTTCATGCTCAAGGATTACAGTTATTTAAAGCATATTGATTTCCGGGATTGTGAATTTTTGACAGAAACAC CTGACTTCTCAACCATCCTAAATCTTGAGAGATTGAATCTTGAAGGTTGTACGAGTTTAGTTAAGATCCATAACTCCATTGGATGCCTTGACAAACTTGT TTTCTTGAGCCTTGAATTCTGTTCAAACCTAAAGAGTCTTTCAAGTAGCCTCAGATTAAGATCTTTACAGACACTTCTCCTTACTGGTTGCTCAAAACTT GAGAAGTTCCCAAACATTGAGGACAGAATGACAAGTGTAGAGAGAGTTTGTTTGAATGAGACTGCTATAGAAGAGCTTCCTTCATCAATTGAAAATCTTG TTGGGCTTCAAGTTCTAACTCTATCATTTTGCAGAAACCTTTCTAGCATTCCAAGTAGCATTTATATGTTGCAGCATCTTAAGCATCTGCTTCTTGAAGG GTGCTCAAATCTTAAGAATTTTCCAGAGAATGTGGGGAACGAAAGACAGCCAATCTTTTCCATGGTGTCCTTGAAGTTAAATTATGGCTCAAAGTGGTTT CCAAGGCTAACATGTCTAGATCTAAAGAACTGCAATTTGTTAGAAGTTGATTTCCTCATGAATCCTGATTGCTTTTCCATGTTGAAGGATTTAGATCTAT CAGGAAACAGTTTTTTTAGGCTTCCAACAAGCATCTGCAGTTTCAAGAAATTGAGACGCCTTAAATTGGTGAACTGCAAATGGCTTCGAGAAATTCCACA GCTTCCGCCAAGTATCAAGTGTATTGGTGCCCGAGATTGCATATCACTGGAAAGATTTTCACAATTAACAAGGGTATTCAAGATTAGTAAAGCTGAGAGA TTAAAAAGGCTTCATGATCTCGACTTCTCCAACTGCCATAAACTTGCTGAGAATCCATTAAGTAGTTTGACAAGTATAGCATTGGCGAATACATCACTTG ATGAGGACGGTGATGTTCTTGATGCAAATAGTGATGGATTCTGTGAGAACTTCAGAATTGAAGTATTTCTTCCTGGAAGTGAGATTCCAGATTGGATGAG CTATTACAGTGATGAAAGTTACTTGTCATTCTTAGTTCCTTCACATATGTACGGGGAAATAATAGCTGTGGTTCTCTGCACCATTTTAAGTTTAGAGGAT GATGTGACTGCGAATATTTCCCGTGAAGTTTTCATCAATGGTCAGACCGTAATTTCTTTTTCGAGACAGTTCTTTTCGTTGGAGTCAGATCACATGTGGC TCTACTATCTTCCATGTCGTATGATCCAGGGATTTAATTCATTGCAGAATGACTGGAGCCGATTTGAGGTTTCATTTAGAATCCTTGGAGCGCCAATGAA TGCAACCCTTAAAGGGTGTGGGGTTCATCTTGTGTACAAGAATGGTGAGAAGGTGAATTTTCCAAGCCTGATTTATGGGAATGAAGATGATCATGACACC TCTTTGAGTACATACAACGAAAGTATCAACTTCTCAGAGACGTGTACTTCACTATCACTAGATCTAATGCGAAGCTGCAGTGATGGTGGGGAGTTCGAGG AATACCAGCAATCATCACTTAAATGGCAGCACCAACCTCTCCGCTTAGACTCCAGTGAGGTCCCAACTGTGACCCTTTCTTCTCCAATGGTTCAACTGAT TCACCAAGACTCTTTCAACGGCTTAAATGGTTTTTTGAGGAGGAAGAGAAAACTGGAGGAGTGTGAAGATCATGATCCTTCTTCTTCCGGCAACAAGCAT CAGAAGTTTAGATTTACTGGTAGTAGCCAAGGCCTATCTTTGACTGATAGAAATGAGTTACACCTTTCGTTGGCTTTATCATTGCAAATCACTGGTGGAC CTGTGACTCCTGATCCATCGGGCATTGAATAA
AA sequence Show only first row Show all	>Potri.001G307300.2 pacid=42788562 polypeptide=Potri.001G307300.2.p locus=Potri.001G307300 ID=Potri.001G307300.2.v4.1 annot-version=v4.1 MVSSSNCWKYDVFLSFRGQETRNTFTAHLYHALCNKGINAFIDDKLERGEHITSQLYRVIEDSRISLLIFSENYARSIYCLDELVKILECKESKGQVVFP VFYNVDPSDVEEQNGSFGEALLFHETYWGIDTERVQKWREALTKAAQLSGWHLNNGNEAKFIWRIVEKVLSQLNHTSLHIAAYQVGLNNHIEEINHMLNT RSDGVCMVGLCGIGGVGKTTISKAVYNLIANQFEGSCFLSNVREISKQHGLLRLQETLLYEILGDKNLVLGSVDRGINVIRDRLRNKKVLIVIDDADNLD QLKQLAGEPDWFGLGSRVIITTRDEHLLVAHGVERLYKVKELCPDDALMLFSWNAFRNPHPSEDHLEVSLRAVRYAQGLPLALVVLGSFLYGRSIREWES ELDRLKKIPNKQIYEVLKISFDGLEYHEKTIFLDIACFFKGQEKDYVIKILDACDVNPDIGIQVLIEKSLIYIENNKIQMHELLQSMGRQIVHQESPNIP GRRSRLWFHEDVLHVLTENIGSCEIEGIILDLPKAEKLCLSADTFTKMKRLRILIVHNVHVFGVLENLPNELRWLEWPECPIESMPSTFHARKLVVLNMQ RSCIRQLGEGFMLKDYSYLKHIDFRDCEFLTETPDFSTILNLERLNLEGCTSLVKIHNSIGCLDKLVFLSLEFCSNLKSLSSSLRLRSLQTLLLTGCSKL EKFPNIEDRMTSVERVCLNETAIEELPSSIENLVGLQVLTLSFCRNLSSIPSSIYMLQHLKHLLLEGCSNLKNFPENVGNERQPIFSMVSLKLNYGSKWF PRLTCLDLKNCNLLEVDFLMNPDCFSMLKDLDLSGNSFFRLPTSICSFKKLRRLKLVNCKWLREIPQLPPSIKCIGARDCISLERFSQLTRVFKISKAER LKRLHDLDFSNCHKLAENPLSSLTSIALANTSLDEDGDVLDANSDGFCENFRIEVFLPGSEIPDWMSYYSDESYLSFLVPSHMYGEIIAVVLCTILSLED DVTANISREVFINGQTVISFSRQFFSLESDHMWLYYLPCRMIQGFNSLQNDWSRFEVSFRILGAPMNATLKGCGVHLVYKNGEKVNFPSLIYGNEDDHDT SLSTYNESINFSETCTSLSLDLMRSCSDGGEFEEYQQSSLKWQHQPLRLDSSEVPTVTLSSPMVQLIHQDSFNGLNGFLRRKRKLEECEDHDPSSSGNKH QKFRFTGSSQGLSLTDRNELHLSLALSLQITGGPVTPDPSGIE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G17680			disease resistance protein (TI...		Potri.001G307300 [exp]	0	1
AT1G10657			Plant protein 1589 of unknown ...		Potri.008G189100 [exp]	1.41	0.9517
AT1G08070		EMB3102, OTP82	ORGANELLE TRANSCRIPT PROCESSIN...		Potri.013G103600 [exp]	7.14	0.9276
					Potri.006G164050 [exp]	11.22	0.9173
AT4G17300		ATNS1, NS1, OVA...	ovule abortion 8, Class II ami...		Potri.017G028800 [exp]	11.31	0.9183	NS1.2
AT2G33180			unknown protein		Potri.001G053700 [exp]	14.69	0.9371
AT3G29320		PHS1	alpha-glucan phosphorylase 1, ...		Potri.010G160200 [exp]	18.33	0.9051
AT1G07250		UGT71C4	UDP-glucosyl transferase 71C4 ...		Potri.006G010000 [exp]	19.18	0.8998
AT1G25440	CO	COL16	B-box type zinc finger protein...		Potri.010G125100 [exp]	24.24	0.8850	COL6.3
AT5G38510			Rhomboid-related intramembrane...		Potri.017G112900 [exp]	28.98	0.9042
AT2G21710		EMB2219	embryo defective 2219, Mitocho...		Potri.009G116200 [exp]	30.00	0.9093

Compare expression of checked genes

Potri.001G307300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.