Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	RGA3.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63020 659 / 0 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G12220 588 / 0 RPS5 RESISTANT TO P. SYRINGAE 5, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT4G10780 569 / 0 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G12210 568 / 0 RFL1 RPS5-like 1 (.1) AT1G15890 564 / 0 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G51480 564 / 0 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G12280 563 / 0 LRR and NB-ARC domains-containing disease resistance protein (.1) AT5G43730 558 / 0 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G63350 550 / 0 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G43740 540 / 9e-180 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G007400 [exp] 640 / 0 AT5G63020 539 / 4e-179 Disease resistance protein (CC-NBS-LRR class) family (.1) Potri.006G147100 [exp] 438 / 2e-140 AT4G26090 775 / 0.0 RESISTANT TO P. SYRINGAE 2, NB-ARC domain-containing disease resistance protein (.1) Potri.019G014346 [exp] 270 / 3e-76 AT4G27220 317 / 1e-92 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014308 [exp] 261 / 3e-73 AT4G27220 326 / 1e-95 NB-ARC domain-containing disease resistance protein (.1) Potri.001G416900 [exp] 254 / 4e-71 AT4G27190 544 / 4e-178 NB-ARC domain-containing disease resistance protein (.1) Potri.018G145566 [exp] 253 / 4e-71 AT4G27220 348 / 7e-105 NB-ARC domain-containing disease resistance protein (.1) Potri.018G137900 [exp] 254 / 6e-71 AT4G27220 354 / 4e-106 NB-ARC domain-containing disease resistance protein (.1) Potri.018G145578 [exp] 251 / 2e-70 AT4G27220 311 / 3e-91 NB-ARC domain-containing disease resistance protein (.1) Potri.018G136500 [exp] 249 / 4e-69 AT4G27220 358 / 8e-108 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039509 [exp] 141 / 5e-34 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10005321 [exp] 137 / 1e-32 AT3G14460 607 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10007261 [exp] 135 / 3e-32 AT3G14460 654 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039540 [exp] 130 / 2e-30 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10026132 [exp] 130 / 2e-30 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10018937 [exp] 127 / 1e-29 AT3G07040 587 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10022792 [exp] 125 / 4e-29 AT3G14470 343 / 7e-102 NB-ARC domain-containing disease resistance protein (.1) Lus10028639 [exp] 124 / 1e-28 AT3G07040 579 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10026109 [exp] 123 / 2e-28 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10014922 [exp] 122 / 6e-28 AT3G07040 523 / 1e-171 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.001G313300.1 pacid=42787847 polypeptide=Potri.001G313302.1.p locus=Potri.001G313300 ID=Potri.001G313300.1.v4.1 annot-version=v4.1 ATGGGAAACTTTTGCTCGATCTCCATATCATGCGATAAATTACTCTCTGGTTGCTTGGATTTCACTTTCAGAAAAGCTGTCTACATATCCAAGCTTAAAG AAAATGTCGATGGTTTGAAGATTGCAGTGGAAGAACTAACAGATCTACATAATGATGTGACGAGAAGAGTGAAAGTTGACGAGGAGCAACAATTGAAGCA GCTAGACCAAGTACAAAGGTGGATTTCAAGGGCAAAAGCTGCTATAGATAAAGCTAATGAATTGCTAAGAGAAGATTCTCAAGAAATTGAAAGACTGTGT CTTAGAGGTTACTGTTCCAAGAACTACAAGTCAAGCTACAGGTTTGCCAAAGAAGTGGATAAGAGGCTACGGGATGTGGCTGATTTAAAGGCCAACGGAG ATTTCAAAGTGGTGGCTGAGAAGGTTCCTGCAGCTTCAGGAGTTCCAAGGCCCAGTGAACCAACAGTGGGGTTGGAGTCAACATTCAATCAGGTGTGGAC CTGCCTGAGAGAAGAAAAACAGGTGGGAATTGTTGGGTTATATGGAATGGGGGGTGTCGGAAAAACTACCCTCTTGACTCAAATCAACAACGAGTCTCTC AAGACACCCGATGATTTTGATATTGTGATATGGGTAGTGGTGTCAAAAGATTTGAAACTTAACACTGTTCAAGAAAGCATAGGGAGAAATATAGGCTGTT CTGATGATTTGTGGAAGAATAAAAGCCTTGACGAAAAAGCTGTGGACATATTTAATGCCTTACGCCATAAAAGGTTTGTGATGTTGTTGGATGATATCTG GGAGAGGGTTGATTTAAAAAAACTTGGAGTTCCTCTTCCTGATATGAACAACGGTTCCAAGGTAGTTTTCACAACTCGTTCCGAAGAAATTTGCGGCCTG ATGGATGCTCACAAAACTATGAAGGTAGATTGCTTGGCATGGGACGATGCTTGGGATTTGTTTCAGAAAAAAGTAGGAGATCAAACTCTTTGTGTTCATA CTGATATTCCTAAACTCGCAAGAAATGTTGCCAAAGAATGTGGAGGTTTGCCCCTGGCGCTCATCACTATTGGTCGGGCTATGGCTTGCAAGAAAACACC TCAAGAATGGCGTCATGCTATCGAGGTCTTAAGGAAATCAGCTTCAGAATTTTCAGGCATGGGAGATGAGGTATTCCCTCTGTTGAAGTTTAGTTATGAT AATCTATCCAAACAAAAAATAAGAACTTGTTTTCTGTACTGTAGTCTCTTTCCAGAGGACTTTCTGATAAATAAAAATGATCTGATAGATTATTGGATTG GTGAGGGAATTTTTGATGGAAGTGATGGCAGGGAAGTGGTAGAGAATTGGGGGTATCACGTTATCGGTTGTCTTCTCCATGCATGTTTATTGGAAGATAA GGATGATTGTGTGAGAATGCATGATGTGATTCGCGATATGGCTTTGTGGATAGCATCTGATATTGAAAGGGATCAACAAAATTTTTTCGTGCAAACTGGA GCTCAATCAAGTAAGGCTCTGGAGGTTGGAAAATGGGAAGGTGTCAGAAAGGTTTCGTTGATGGCAAATCATATAGTACATCTTTCAGGAACACCAAACT GCTCCAATCTTCGAACTTTGTTTCTTGGTAGTATTCATTTGAATAAAATCTCCAGAGGTTTCTTCCAATTTATGCCTAATCTAACAGTTCTAGACTTGTC AAATAACAATTCATTACTCGGATTGCCTAGGGATGTTTGGAAGTTGGTTTCGTTACAATATCTGAATCTTTCACGGACAGGCATAAAGGAGTTGCCAACA GAGTTGAATGAATTGGTAAAGTTGAGATATTTGAACCTGGAGTATACGCATTCGCTCTATCTACTACCACACGGAGTGATATCTGGCTTCCCGATGATGC GTATATTAAGAATGTTCCGTTGTGGTTCTTCTGAACAGGCAGCTGAAGACTGTATTCTTTCAAGAGATGAATCCTTGGTAGAAGAACTGCAGTGCTTGGA AGAACTGAATATGCTGACTGTCACCATAAGAAGTGCTGCTGCTCTTGAGCGATTGTCAAGCTTCCAAGGGATGCAGAGTTCTACTCGAGTTCTATACCTC GAGCTTTTCCATGATTCAAAGCTAGTTAATTTTTCATCATTAGCAAATATGAAAAATCTGGATACTCTGCACATTTGTCATTGTGGGAGTTTGGAAGAGT TGCAGATTGACTGGGAAGGGGAACTACAAAAGATGCAAGCTATCAACAACCTTGCCCAAGTGGCCACAACCGAGAGACCCTTCCGCAGCCTCTCCAGTGT ATATGTAGAAAATTGCTTGAAATTGAGTAACTTGACATGGCTTATACTTGCTCAAAACCTTACATTTCTTAGGGTATCAAACTGCCCTAAACTGGTAGAG GTAGCAAGTGATGAGAAACTACCTGAGGTTCCTGAGTTGGTGGAAAATCTAAACCCGTTTGCAAAACTCAAAGCTGTGGAATTATTATCCTTGCCAAATC TCAAAAGCTTCTATTGGAATGCCCTGCCACTACCATCAGTGAAGGATGTCCGAGTTGTTGACTGCCCGTTTCTGGATAAGCGGCCTCTCAATACTAGCAG CGCCAATCACCAAAATGACTGCATAGGGAGGCAAAACTGGTAG
AA sequence Show only first row Show all	>Potri.001G313300.1 pacid=42787847 polypeptide=Potri.001G313302.1.p locus=Potri.001G313300 ID=Potri.001G313300.1.v4.1 annot-version=v4.1 MGNFCSISISCDKLLSGCLDFTFRKAVYISKLKENVDGLKIAVEELTDLHNDVTRRVKVDEEQQLKQLDQVQRWISRAKAAIDKANELLREDSQEIERLC LRGYCSKNYKSSYRFAKEVDKRLRDVADLKANGDFKVVAEKVPAASGVPRPSEPTVGLESTFNQVWTCLREEKQVGIVGLYGMGGVGKTTLLTQINNESL KTPDDFDIVIWVVVSKDLKLNTVQESIGRNIGCSDDLWKNKSLDEKAVDIFNALRHKRFVMLLDDIWERVDLKKLGVPLPDMNNGSKVVFTTRSEEICGL MDAHKTMKVDCLAWDDAWDLFQKKVGDQTLCVHTDIPKLARNVAKECGGLPLALITIGRAMACKKTPQEWRHAIEVLRKSASEFSGMGDEVFPLLKFSYD NLSKQKIRTCFLYCSLFPEDFLINKNDLIDYWIGEGIFDGSDGREVVENWGYHVIGCLLHACLLEDKDDCVRMHDVIRDMALWIASDIERDQQNFFVQTG AQSSKALEVGKWEGVRKVSLMANHIVHLSGTPNCSNLRTLFLGSIHLNKISRGFFQFMPNLTVLDLSNNNSLLGLPRDVWKLVSLQYLNLSRTGIKELPT ELNELVKLRYLNLEYTHSLYLLPHGVISGFPMMRILRMFRCGSSEQAAEDCILSRDESLVEELQCLEELNMLTVTIRSAAALERLSSFQGMQSSTRVLYL ELFHDSKLVNFSSLANMKNLDTLHICHCGSLEELQIDWEGELQKMQAINNLAQVATTERPFRSLSSVYVENCLKLSNLTWLILAQNLTFLRVSNCPKLVE VASDEKLPEVPELVENLNPFAKLKAVELLSLPNLKSFYWNALPLPSVKDVRVVDCPFLDKRPLNTSSANHQNDCIGRQNW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G63020			Disease resistance protein (CC...		Potri.001G313300 [exp]	0	1	RGA3.1
AT3G09670			Tudor/PWWP/MBT superfamily pro...		Potri.016G085500 [exp]	1.41	0.8866
AT1G77210		AtSTP14	sugar transport protein 14, su...		Potri.001G253800 [exp]	2.82	0.8551
AT1G09570		FHY2, HY8, FRE1...	ELONGATED HYPOCOTYL 8, FAR RED...		Potri.013G000300 [exp]	3.00	0.8627	PHYC.1,phya
AT1G17210		ATILP1	ARABIDOPSIS IAP-LIKE PROTEIN, ...		Potri.011G081200 [exp]	5.74	0.8458
AT4G27290			S-locus lectin protein kinase ...		Potri.001G412000 [exp]	6.48	0.8574
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.016G012601 [exp]	8.06	0.8402
AT3G14470			NB-ARC domain-containing disea...		Potri.017G140132 [exp]	10.39	0.8453
AT3G14470			NB-ARC domain-containing disea...		Potri.014G012000 [exp]	11.53	0.8339
AT3G14470			NB-ARC domain-containing disea...		Potri.006G271800 [exp]	11.83	0.8576
AT3G14470			NB-ARC domain-containing disea...		Potri.014G007600 [exp]	11.83	0.8389

Compare expression of checked genes

Potri.001G313300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.