Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ERF52
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80580 90 / 6e-21 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT2G33710 61 / 9e-11 AP2_ERF Integrase-type DNA-binding superfamily protein (.1.2) AT1G53170 60 / 1e-10 AP2_ERF ATERF8, ATERF-8 ETHYLENE RESPONSE ELEMENT BINDING FACTOR 4, ethylene response factor 8 (.1) AT4G11140 61 / 2e-10 AP2_ERF CRF1 cytokinin response factor 1 (.1) AT1G12980 61 / 3e-10 AP2_ERF DRN, ESR1 ENHANCER OF SHOOT REGENERATION 1, DORNROSCHEN, Integrase-type DNA-binding superfamily protein (.1) AT4G27950 60 / 4e-10 AP2_ERF CRF4 cytokinin response factor 4 (.1) AT5G13330 59 / 4e-10 AP2_ERF RAP2.6L related to AP2 6l (.1) AT5G07310 59 / 4e-10 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G28370 58 / 4e-10 AP2_ERF AtERF11 ERF domain protein 11 (.1) AT1G24590 60 / 5e-10 AP2_ERF ESR2, DRNL, SOB2, DRN-LIKE FOR SUPPRESSOR OF PHYTOCHROMEB-4 2, ENHANCER OF SHOOT REGENERATION 2, DORNROSCHEN-like (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G053700 [exp] 379 / 8e-133 AT1G80580 93 / 6e-22 Integrase-type DNA-binding superfamily protein (.1) Potri.005G087200 [exp] 65 / 1e-11 AT2G33710 87 / 4e-20 Integrase-type DNA-binding superfamily protein (.1.2) Potri.007G076800 [exp] 64 / 2e-11 AT2G33710 104 / 2e-26 Integrase-type DNA-binding superfamily protein (.1.2) Potri.001G094800 [exp] 63 / 4e-11 AT4G23750 177 / 2e-52 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2) Potri.013G158500 [exp] 63 / 5e-11 AT4G27950 124 / 1e-32 cytokinin response factor 4 (.1) Potri.002G167400 [exp] 62 / 1e-10 AT4G27950 162 / 3e-47 cytokinin response factor 4 (.1) Potri.015G023200 [exp] 62 / 1e-10 AT4G27950 211 / 9e-66 cytokinin response factor 4 (.1) Potri.001G067600 [exp] 61 / 1e-10 AT5G13330 130 / 1e-37 related to AP2 6l (.1) Potri.012G032900 [exp] 61 / 2e-10 AT4G27950 214 / 6e-67 cytokinin response factor 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026053 [exp] 102 / 1e-25 AT5G18560 97 / 7e-24 Integrase-type DNA-binding superfamily protein (.1) Lus10014345 [exp] 100 / 4e-25 AT1G12980 97 / 1e-24 ENHANCER OF SHOOT REGENERATION 1, DORNROSCHEN, Integrase-type DNA-binding superfamily protein (.1) Lus10033938 [exp] 62 / 9e-11 AT4G23750 201 / 6e-62 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2) Lus10006796 [exp] 62 / 1e-10 AT5G61890 122 / 8e-33 Integrase-type DNA-binding superfamily protein (.1) Lus10035076 [exp] 62 / 1e-10 AT1G24590 143 / 2e-40 FOR SUPPRESSOR OF PHYTOCHROMEB-4 2, ENHANCER OF SHOOT REGENERATION 2, DORNROSCHEN-like (.1) Lus10032353 [exp] 62 / 1e-10 AT4G23750 207 / 2e-64 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2) Lus10005805 [exp] 62 / 1e-10 AT5G61890 120 / 4e-32 Integrase-type DNA-binding superfamily protein (.1) Lus10017907 [exp] 61 / 2e-10 AT1G24590 134 / 1e-37 FOR SUPPRESSOR OF PHYTOCHROMEB-4 2, ENHANCER OF SHOOT REGENERATION 2, DORNROSCHEN-like (.1) Lus10035129 [exp] 60 / 2e-10 AT5G13910 152 / 7e-46 LEAFY PETIOLE, Integrase-type DNA-binding superfamily protein (.1) Lus10017550 [exp] 60 / 3e-10 AT4G23750 172 / 2e-51 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [poplar] [flax] MBD-like PF00847 [poplar] [flax] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Potri.001G313500.1 pacid=42790102 polypeptide=Potri.001G313500.1.p locus=Potri.001G313500 ID=Potri.001G313500.1.v4.1 annot-version=v4.1 ATGAATAACCAAAAATTACTCCCCATCCCGTTCTTCCCTAAACCCGAAACATATCATTTATCGGAAATGTTTAGGCTCCTAACTGAAAATTCATCATTTT GTGGATCTCTTTTACAACCCCAAAATTCATTTTCATCGCCATTTACCTCTAATCACTACGACCCCTCGGCTTACTTTCCTGTTTCGACTGATATTTCGGC TATTGTTTCCCTCCCCGGTTTTATCAAGAAACCACCCGAAACACCACCTGTTCTTGATGGAATTGGTGCTGTTGTTGGCCAAGAAGTCCTTTTTGGCACG ACCAATACCAAGAATTCAGAAACATCGGATTTTGCTTCGATTTCTAAGCGTATCGGATCAAAAGAAAGAAAACACGAAAGGGGGGCTAAGAGAAACTGTG CTAATAATGGGGTTCCAGTGCAAAGGACCTATAGAGGGGTTAGAAAGAGGCCATGGGGGAGGTGGTCAGCTGAGATAAGAGACCGTATAGGGCGGTGCCG CCACTGGCTTGGAACATTCGACACCGCGGAGGAGGCAGCGCGTGCATATGACGCTGCTGCTAGAAGACTTAGAGGTGCAAAAGCAAGAACTAACTTTGAA ATTCCTCCTGTCTTGCCTCCCATATCTTCTTCTCCTTCTCCCCCAAATGCATGCTCAAGTTCAAGTTTAAACAATGCAGAAGTGAAGAGGAGGACTAATA ATTCTAACAACAAATTGATTGGTAATGGTGGTAGAAAGTGTGCAGTTGTTACTTCCGTGGCACATTTGTTTAGTAATTTTGAGGGGAAAGGAACTAGTGG CGGCGGCAATGTGGAGCTGGATTTGAAGTTGGCGACAGGGCTTGGTGGTCATCATGACGGCAACAAGAGTGCTGCTAGTGCTCCTCCATCTATGGTGGTT TAG
AA sequence Show only first row Show all	>Potri.001G313500.1 pacid=42790102 polypeptide=Potri.001G313500.1.p locus=Potri.001G313500 ID=Potri.001G313500.1.v4.1 annot-version=v4.1 MNNQKLLPIPFFPKPETYHLSEMFRLLTENSSFCGSLLQPQNSFSSPFTSNHYDPSAYFPVSTDISAIVSLPGFIKKPPETPPVLDGIGAVVGQEVLFGT TNTKNSETSDFASISKRIGSKERKHERGAKRNCANNGVPVQRTYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGAKARTNFE IPPVLPPISSSPSPPNACSSSSLNNAEVKRRTNNSNNKLIGNGGRKCAVVTSVAHLFSNFEGKGTSGGGNVELDLKLATGLGGHHDGNKSAASAPPSMVV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G80580	AP2_ERF		Integrase-type DNA-binding sup...		Potri.001G313500 [exp]	0	1	ERF52
AT2G31160		OBO1, LSH3	ORGAN BOUNDARY 1, LIGHT SENSIT...		Potri.002G037500 [exp]	2.44	0.7692
AT5G53486			unknown protein		Potri.012G017400 [exp]	7.07	0.8243
AT5G66350		SHI	SHORT INTERNODES, Lateral root...		Potri.009G121600 [exp]	12.16	0.7596
AT1G68800	TCP	TCP12, BRC2, TC...	BRANCHED 2, TCP domain protein...		Potri.012G059900 [exp]	15.49	0.6869
AT5G19640			Major facilitator superfamily ...		Potri.003G212900 [exp]	17.20	0.7813
AT3G63230			Protein of unknown function (D...		Potri.002G050100 [exp]	39.11	0.6406
AT3G07960		PIP5K6	phosphatidylinositol-4-phospha...		Potri.003G196000 [exp]	39.19	0.7092
ATCG01090		ATCG01090.1, ND...	NADPH dehydrogenases (.1)		Potri.013G074950 [exp]	45.13	0.7305
AT2G41510		ATCKX1, CKX1	cytokinin oxidase/dehydrogenas...		Potri.016G044100 [exp]	45.72	0.6300
AT5G57810		TET15	tetraspanin15 (.1)		Potri.006G178000 [exp]	47.91	0.6575

Compare expression of checked genes

Potri.001G313500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.