Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13640 345 / 2e-119 GARP UNE16 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) AT3G24120 340 / 2e-117 GARP Homeodomain-like superfamily protein (.1.2) AT1G79430 214 / 3e-67 GARP WDY, APL WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) AT3G04030 208 / 2e-64 GARP Homeodomain-like superfamily protein (.1.2.3) AT5G18240 186 / 9e-56 GARP MYR1, ATMYR1 ARABIDOPSIS MYB-RELATED PROTEIN 1, myb-related protein 1 (.1.2.3.4.5) AT3G12730 172 / 1e-52 GARP Homeodomain-like superfamily protein (.1) AT1G69580 170 / 2e-50 GARP Homeodomain-like superfamily protein (.1.2) AT2G01060 167 / 6e-50 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT5G45580 165 / 2e-49 GARP Homeodomain-like superfamily protein (.1) AT4G28610 145 / 3e-40 GARP ATPHR1, PHR1 phosphate starvation response 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G054800 [exp] 542 / 0 AT4G13640 338 / 6e-117 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Potri.016G001200 [exp] 208 / 1e-65 AT4G13640 193 / 5e-60 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Potri.008G081800 [exp] 203 / 3e-63 AT1G79430 335 / 6e-114 WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) Potri.013G060200 [exp] 200 / 4e-61 AT3G04030 462 / 3e-162 Homeodomain-like superfamily protein (.1.2.3) Potri.019G032700 [exp] 200 / 4e-61 AT3G04030 449 / 2e-157 Homeodomain-like superfamily protein (.1.2.3) Potri.010G174100 [exp] 196 / 2e-60 AT1G79430 356 / 4e-122 WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) Potri.008G087600 [exp] 182 / 3e-55 AT1G69580 276 / 2e-91 Homeodomain-like superfamily protein (.1.2) Potri.001G133400 [exp] 181 / 3e-55 AT5G45580 220 / 2e-71 Homeodomain-like superfamily protein (.1) Potri.003G100100 [exp] 176 / 2e-53 AT5G45580 240 / 6e-79 Homeodomain-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007132 [exp] 477 / 4e-171 AT4G13640 390 / 3e-137 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Lus10016676 [exp] 451 / 6e-161 AT4G13640 380 / 2e-133 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Lus10001844 [exp] 209 / 4e-64 AT1G79430 286 / 3e-93 WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) Lus10001754 [exp] 207 / 2e-63 AT1G79430 292 / 2e-95 WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) Lus10020264 [exp] 201 / 9e-62 AT3G04030 441 / 4e-154 Homeodomain-like superfamily protein (.1.2.3) Lus10002629 [exp] 201 / 2e-61 AT3G04030 440 / 9e-154 Homeodomain-like superfamily protein (.1.2.3) Lus10037169 [exp] 177 / 2e-53 AT1G69580 252 / 9e-83 Homeodomain-like superfamily protein (.1.2) Lus10036758 [exp] 176 / 4e-53 AT1G69580 258 / 9e-85 Homeodomain-like superfamily protein (.1.2) Lus10038735 [exp] 174 / 4e-53 AT3G24120 177 / 8e-55 Homeodomain-like superfamily protein (.1.2) Lus10012142 [exp] 174 / 9e-53 AT5G45580 215 / 2e-69 Homeodomain-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain CL0123 [poplar] [flax] PF14379 [poplar] [flax] Myb_CC_LHEQLE MYB-CC type transfactor, LHEQLE motif
Representative CDS sequence Show only first row Show all	>Potri.001G314800.1 pacid=42791575 polypeptide=Potri.001G314800.1.p locus=Potri.001G314800 ID=Potri.001G314800.1.v4.1 annot-version=v4.1 ATGTACTCTGCAATACACTCACTGCCTTTGGATGGACATGGGGACTTTCAAGCGGCATTAGATGGGACTAATCTACCTGGGGATGCGTGCTTGGTTCTCA CTACGGATCCAAAACCAAGGCTCCGCTGGACTGCAGAGTTACATGAGAGATTTGTTGATGCAGTTGCCCAACTTGGTGGACCTGACAAAGCAACACCAAA GACAATTATGAGAACAATGGGGGTAAAAGGCCTCACCCTTTATCACTTGAAATCTCACCTGCAGAAATACCGGCTGGGAAAGCAGTCCTGCAAGGAATCA ACTGATAACTCCAAGGATGTTGGGATTGCAGCATCAGTTGCAGAAAGTCAGGATACTGGTTCATCAACTTCGGCATCATCAAGAATGATTGCACAGGATC TTAATGATGGTTACCAGGTTACTGAGGCTTTGAGAGTGCAGATGGAAGTCCAACGAAGATTGCATGAGCAGCTTGAGGTACAACGTCGTCTCCAACTTCG GATTGAAGCACAGGGGAAATACTTACAGTCAATACTTGAGAAAGCTTGTAAAGCCCTGAATGATCAGGCTGTTGCGACTGCAGGACTTGAAGCTGCTAGA GAAGAGCTTTCTGAATTAGCAATCAAGGTTTCCAATGAACGTGCAGGAATTGCCCCACTTGATACCATGAAAATGCCTTCCATATCTGAACTTGCTGCTG CTTTAGAGAACAAACATGCTTCCAATGTGCCTGCTCGTGTTGGCGATTGCTCTGTCGAAAGCTGCCTGACTTCAACTGGGAGCCCAGTTTCTCCAATGGG TGTGGGCGCACAGGTTGCTTCCACGAAGAAAAGATCAAGGCCTGTGTTTGGTAATGGAGATTCATTGCCCTTCGATGGCAACATTCAGCAAGAAGTTGAA TGGACAATGAACAATATTGTATGA
AA sequence Show only first row Show all	>Potri.001G314800.1 pacid=42791575 polypeptide=Potri.001G314800.1.p locus=Potri.001G314800 ID=Potri.001G314800.1.v4.1 annot-version=v4.1 MYSAIHSLPLDGHGDFQAALDGTNLPGDACLVLTTDPKPRLRWTAELHERFVDAVAQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQSCKES TDNSKDVGIAASVAESQDTGSSTSASSRMIAQDLNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALNDQAVATAGLEAAR EELSELAIKVSNERAGIAPLDTMKMPSISELAAALENKHASNVPARVGDCSVESCLTSTGSPVSPMGVGAQVASTKKRSRPVFGNGDSLPFDGNIQQEVE WTMNNIV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G13640	GARP	UNE16	unfertilized embryo sac 16, Ho...		Potri.001G314800 [exp]	0	1
AT5G11950		LOG8	LONELY GUY 8, Putative lysine ...		Potri.006G226100 [exp]	5.56	0.8262
AT1G67050			unknown protein		Potri.017G115700 [exp]	7.87	0.8223
					Potri.017G128500 [exp]	12.24	0.8204
AT3G06483		ATPDHK, PDK	pyruvate dehydrogenase kinase ...		Potri.010G002000 [exp]	17.83	0.7928	Pt-PDK.1
AT5G47740			Adenine nucleotide alpha hydro...		Potri.012G084700 [exp]	20.61	0.7997
AT1G26320			Zinc-binding dehydrogenase fam...		Potri.017G002300 [exp]	22.27	0.7861
AT2G41250			Haloacid dehalogenase-like hyd...		Potri.016G037600 [exp]	39.34	0.7458
AT3G61180			RING/U-box superfamily protein...		Potri.002G155200 [exp]	42.14	0.7776
AT5G47610			RING/U-box superfamily protein...		Potri.011G147900 [exp]	42.24	0.7912
AT1G70310		SPDS2	spermidine synthase 2 (.1)		Potri.008G147200 [exp]	43.89	0.7405

Compare expression of checked genes

Potri.001G314800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.