Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13620 194 / 4e-57 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G22190 108 / 2e-26 AP2_ERF RAP2.4 related to AP2 4, Integrase-type DNA-binding superfamily protein (.1) AT1G36060 103 / 1e-24 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G78080 103 / 2e-24 AP2_ERF CAF1, RAP2.4, WIND1 wound induced dedifferentiation 1, related to AP2 4 (.1) AT4G39780 93 / 6e-21 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT2G22200 92 / 9e-21 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G65130 92 / 2e-20 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G64380 87 / 1e-18 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT2G20880 86 / 4e-18 AP2_ERF AtERF53 ERF domain 53, Integrase-type DNA-binding superfamily protein (.1) AT3G16770 80 / 1e-16 AP2_ERF RAP2.03, ATEBP, RAP2.3 ,ERF72 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G055400 [exp] 600 / 0 AT4G13620 216 / 9e-66 Integrase-type DNA-binding superfamily protein (.1) Potri.002G094200 [exp] 104 / 1e-24 AT1G78080 228 / 1e-72 wound induced dedifferentiation 1, related to AP2 4 (.1) Potri.005G168700 [exp] 102 / 7e-24 AT1G78080 197 / 3e-60 wound induced dedifferentiation 1, related to AP2 4 (.1) Potri.005G077300 [exp] 99 / 2e-22 AT1G78080 207 / 7e-64 wound induced dedifferentiation 1, related to AP2 4 (.1) Potri.007G090600 [exp] 97 / 5e-22 AT1G78080 205 / 4e-63 wound induced dedifferentiation 1, related to AP2 4 (.1) Potri.001G092400 [exp] 93 / 9e-21 AT1G64380 181 / 1e-54 Integrase-type DNA-binding superfamily protein (.1) Potri.003G139300 [exp] 89 / 2e-19 AT1G64380 173 / 1e-51 Integrase-type DNA-binding superfamily protein (.1) Potri.013G135600 [exp] 87 / 2e-18 AT2G20880 180 / 2e-52 ERF domain 53, Integrase-type DNA-binding superfamily protein (.1) Potri.019G102200 [exp] 87 / 3e-18 AT2G20880 195 / 2e-58 ERF domain 53, Integrase-type DNA-binding superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007124 [exp] 160 / 9e-46 AT4G13620 181 / 1e-54 Integrase-type DNA-binding superfamily protein (.1) Lus10016669 [exp] 137 / 7e-37 AT4G13620 184 / 2e-55 Integrase-type DNA-binding superfamily protein (.1) Lus10000582 [exp] 106 / 3e-26 AT4G39780 208 / 2e-67 Integrase-type DNA-binding superfamily protein (.1) Lus10019665 [exp] 104 / 2e-25 AT4G39780 209 / 1e-67 Integrase-type DNA-binding superfamily protein (.1) Lus10003889 [exp] 100 / 4e-23 AT1G64380 197 / 4e-61 Integrase-type DNA-binding superfamily protein (.1) Lus10016801 [exp] 99 / 9e-23 AT1G78080 245 / 3e-79 wound induced dedifferentiation 1, related to AP2 4 (.1) Lus10022497 [exp] 99 / 2e-22 AT1G78080 248 / 2e-80 wound induced dedifferentiation 1, related to AP2 4 (.1) Lus10033463 [exp] 98 / 3e-22 AT1G78080 248 / 2e-80 wound induced dedifferentiation 1, related to AP2 4 (.1) Lus10020913 [exp] 97 / 5e-22 AT1G78080 246 / 2e-79 wound induced dedifferentiation 1, related to AP2 4 (.1) Lus10001898 [exp] 96 / 9e-22 AT1G64380 210 / 1e-65 Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [poplar] [flax] MBD-like PF00847 [poplar] [flax] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Potri.001G315300.1 pacid=42788714 polypeptide=Potri.001G315300.1.p locus=Potri.001G315300 ID=Potri.001G315300.1.v4.1 annot-version=v4.1 ATGGAGGATCAGTTTCCCAAAATGGAAACCTTTATGCACAAGGAATTGGCAGCTCAAAGTAGTTTTCATGGAATGGCAACAGGATCAAGATATTTTGGTG ATCCCACCAGTTGGGGTGCTCTAGCTGGGGCTACTTGTCATGTAGATGTTGGAAATAATGGCACGAAATCGCCATCACAATCGTCTCCCGAAAGATTGTT TTCGAGTTCGGAATCGAGTTCTTCGGCAGACGATCTGGTTTCAGGTACCAATTTGGTTGGTAACATCCCTGGATTTGGCAGACAGGATTATTCCAAACAA AATCATGAAAGTTGTTTTATGTCAGGATTGTGTTCTATCAATTCTCCTGGAGGTTCAATATCTGACTATATTGTCAAAGAAAGCTCCATTAATCCTGTGA ATTTCTCGGAATATTTTCCAGCACTAAATAACCAAGCTCAAGTATCTGAACCTCCCTCTCCATCTTCCTTATCAAACACATCAAAATTTCCAAATTTGAC CTTGTTTTTGCAGGAACCAGAAGCTTTCATCCAAACAAGTTTTCAAACAACTTGGCAAGGATCAAAGCCCAAACAAGCTGTCGATCAACTTGGCAAGGAT CAAAGATGTGAGCCTATGTCATTATTTCCAAACACTTCATTCTCCATGCCTCAACTAGGCCAAATTCATTTCCAACCAAGTAATGATTGGCTCAAAATAA ATCAAACCTTGGCAAGCTATTCTATTAAGGGATTTAATGACTATTGGCTTAGAACTACGACCACACAGCCGATGAAATACACCGGTCGAAGATTGCAGAA CCAGCATCAAAAGCCTTCATTTTCATCAGCTTCAACATCGCCGGGAAAGCTGTTTAGAGGAGTGAGGCAAAGGCACTGGGGCAAATGGGTTACAGAGATT AGGTTGCCGCGAAACCGGACGAGGGTTTGGTTAGGGACTTTCAACACAGCAGAAGAAGCTGCCATTGCTTATGACACGGCAGCTTACATGTTACGAGGAG ATTATGCGCATTTGAATTTCCCAGATCTTAAGCATCAACTTAAGGCCAATTCATTGAATGGAACCACAGCTGCCCTTCTTGAAGCAAAGTTACAATTAGC AATATCACAAGGCAACAATATTTCTGTTCAAAAGAAGCACAGTGATGATCCACCACGAACATCACCAGATAAGATTATACATGACATGAATGCTACAAAA CCCAAAGGTTTGAGCCAAAACACAACAAGAGAAGAGTTGCAATTTGAGTTGGAAGGCAAAACTGGATGTCACGAAGTGATTCACGAGAACCAGAAAGGTC AAGAGGTTGTAGCATCTGATGCTGAAGCTGTTCAGTTAAGTAGAATGCCTTCCTTGGACATGGACATGATCTGGGATTCTCTTTTAGTCTCTGATTCATG A
AA sequence Show only first row Show all	>Potri.001G315300.1 pacid=42788714 polypeptide=Potri.001G315300.1.p locus=Potri.001G315300 ID=Potri.001G315300.1.v4.1 annot-version=v4.1 MEDQFPKMETFMHKELAAQSSFHGMATGSRYFGDPTSWGALAGATCHVDVGNNGTKSPSQSSPERLFSSSESSSSADDLVSGTNLVGNIPGFGRQDYSKQ NHESCFMSGLCSINSPGGSISDYIVKESSINPVNFSEYFPALNNQAQVSEPPSPSSLSNTSKFPNLTLFLQEPEAFIQTSFQTTWQGSKPKQAVDQLGKD QRCEPMSLFPNTSFSMPQLGQIHFQPSNDWLKINQTLASYSIKGFNDYWLRTTTTQPMKYTGRRLQNQHQKPSFSSASTSPGKLFRGVRQRHWGKWVTEI RLPRNRTRVWLGTFNTAEEAAIAYDTAAYMLRGDYAHLNFPDLKHQLKANSLNGTTAALLEAKLQLAISQGNNISVQKKHSDDPPRTSPDKIIHDMNATK PKGLSQNTTREELQFELEGKTGCHEVIHENQKGQEVVASDAEAVQLSRMPSLDMDMIWDSLLVSDS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G13620	AP2_ERF		Integrase-type DNA-binding sup...		Potri.001G315300 [exp]	0	1
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Potri.016G022000 [exp]	1.00	0.9718
AT2G45750			S-adenosyl-L-methionine-depend...		Potri.015G139000 [exp]	2.44	0.9618
AT5G16770	MYB	ATMYB9	myb domain protein 9 (.1.2)		Potri.003G094200 [exp]	3.46	0.9477
AT4G20780		CML42	calmodulin like 42 (.1)		Potri.006G276500 [exp]	4.47	0.9516
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Potri.010G164900 [exp]	4.47	0.9523
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Potri.001G312600 [exp]	9.89	0.9470
AT5G44440			FAD-binding Berberine family p...		Potri.001G462000 [exp]	12.36	0.9441
AT1G22150		SULTR1;3	sulfate transporter 1;3 (.1)		Potri.002G092500 [exp]	13.07	0.8505	Pt-SULTR1.1
AT5G57090		MM31, ATPIN2, A...	WAVY ROOTS 6, ETHYLENE INSENSI...		Potri.018G139400 [exp]	13.56	0.9454	PIN9,Pt-PIN2.4
AT5G37800	bHLH	ATRSL1, bHLH086	ARABIDOPSIS THALIANA RHD SIX-L...		Potri.017G126800 [exp]	13.78	0.9415

Compare expression of checked genes

Potri.001G315300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.