Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66350 296 / 2e-92 GRAS RGL1 RGA-like 1 (.1) AT3G54220 294 / 3e-90 GRAS SGR1, SCR SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) AT3G03450 282 / 1e-86 GRAS RGL2 RGA-like 2 (.1) AT5G17490 277 / 3e-85 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT1G14920 270 / 2e-82 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT5G41920 261 / 2e-80 GRAS GRAS family transcription factor (.1) AT2G01570 266 / 3e-80 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT5G48150 255 / 5e-77 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT2G04890 251 / 2e-76 GRAS SCL21 SCARECROW-like 21 (.1) AT1G50600 232 / 2e-67 GRAS SCL5 scarecrow-like 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G143833 [exp] 306 / 6e-93 AT3G54220 679 / 0.0 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Potri.008G131700 [exp] 298 / 3e-92 AT2G01570 781 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.010G110700 [exp] 296 / 2e-91 AT2G01570 764 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.006G114200 [exp] 300 / 2e-90 AT3G54220 639 / 0.0 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Potri.017G125200 [exp] 291 / 4e-89 AT2G01570 701 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.015G091200 [exp] 287 / 8e-89 AT1G66350 256 / 4e-79 RGA-like 1 (.1) Potri.012G093900 [exp] 285 / 5e-88 AT1G66350 257 / 2e-79 RGA-like 1 (.1) Potri.004G089800 [exp] 283 / 2e-86 AT2G01570 709 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.005G095100 [exp] 275 / 3e-84 AT1G66350 252 / 3e-77 RGA-like 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041540 [exp] 811 / 0 AT1G66350 317 / 2e-100 RGA-like 1 (.1) Lus10012554 [exp] 661 / 0 AT1G66350 318 / 1e-99 RGA-like 1 (.1) Lus10040734 [exp] 304 / 3e-93 AT5G41920 410 / 1e-137 GRAS family transcription factor (.1) Lus10016496 [exp] 300 / 1e-91 AT3G54220 663 / 0.0 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Lus10037055 [exp] 287 / 5e-89 AT1G66350 258 / 5e-80 RGA-like 1 (.1) Lus10036932 [exp] 285 / 3e-88 AT1G66350 258 / 1e-79 RGA-like 1 (.1) Lus10033583 [exp] 277 / 4e-84 AT2G01570 681 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10017626 [exp] 275 / 2e-83 AT2G01570 679 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10012323 [exp] 261 / 6e-79 AT5G48150 659 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10017758 [exp] 259 / 6e-78 AT2G01570 454 / 4e-155 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03514 [poplar] [flax] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Potri.001G326000.2 pacid=42789814 polypeptide=Potri.001G326000.2.p locus=Potri.001G326000 ID=Potri.001G326000.2.v4.1 annot-version=v4.1 ATGATTAATGCTCTCTGTGGAAGCATGGGGTCTCTCAAGAGCGAGAACTCATGCAACAAGTTGCAACCAACTTCTCCTAATGAGTCATCATCAGTCACTG AATCTAAAAAAACTACTCAGTCTTTTGAATTTGAACAAAATAGCCTAACCCCAACAAGCCTAAACTTACCTGCAGTCAAATTTGAGTTGGATGGAGATGT TGAAGTCCAGTCACCTGATAGTTCCATGTGGGAGAGCTTTTTCACTGATAATTTTGACTCTGACTTCATGATCTCATCTCCAGTGAGGAACTTGCCATCG CCACAAACTTCAAGCTACAATCACAATTATGCTCATGCAATGCAAGGGCAGAGTCTTTCAGGCTGCTCTCCTCCTAGATATTTATCTCAGCTTGGAGCTG CTTTCAGTAGTATCCACAAAGGGAAGGGACAGAGTCCACTCCATAGAATGTGTAACTCTCCAAATAATCAATTCATGCAAGTTGAGAGCCTTTCTTTACC AGGTATTGAGGACTTCTTGGATGATTTTCAAAGAGATGGGTACGGAGAAGGATACCAACAACCACCTAAGATGTCAGGCAGCAGTGGAAGTTCAACACAA TTGTTTGATATGTCAACCACAGTTCCTGCAATGTTGGATTGCTTGACTATACAGAATCCCTCCAGGTTTTGTTCTGGATCGGTGAGTGAAACATCATCAG GCTCACCAATGACACAGGAGAGCGATATTTTTCAGATGGGTTCTATTGGAATTGCACCATCATCACAGAAACTATTACAGGAAAACCAGCAGCAGCCGCA GCCGCTGCCACAACCAACAACACAACCACAGCCTCCACCAACAACCCAATCCCTGCAACAGCAACCACAGAGTCTTAACCATACCTTGATGGTATCTCTT CCTATTGGCTCTGAGCAGGAACAAGATAGTGGCCTCCAACTACTGAACCTCCTCCTTGCTTGTGCTGAGGCGGTATCCAATGAAGACTACATGCTAGCTA GAAGATATCTCCACCACCTGAATAGAGTCGTCAGCCCCCTTGGCGACTCCATGCAAAGAGTTGCGTCCTGTTTCACTGAGGCCCTAAGTGCTAGGCTAGC TGCAACCCTTACAACTAAACCTAGTACCTCCTCTTCAAAAGCCTTCTCTCCTTTCCCTCCAAACTCCATGGAAATTCTCAAAATTTACCAAATACTTTAC CAAGCTTGCCCTTACGTAAAGTTTGCTCATTTCACTGCTAATCAAGCAATTTTTGAGGCCTTTGAAACTGAAGAACGTGTTCATGTTATTGACCTAGACA TTCTTCAAGGCTATCAATGGCCAGCTTTCATGCAAGCCCTAGCAGCTAGACCTGGTGGCGCTCCATTCCTCCGAATAACTGGAGTTGGATCCTCTATGGA GAATGTTAGAGAGACCGGTCGGTGCTTGACAGAACTAGCTCATTCTCTTCATGTTCCATTTGAGTACCACCCAGTTGCTGAAGAACTCGTAGACCTTAAA CCACACATGTTCAATAGAAGGGTTGGTGAGGCTCTTGCTGTTAACTCTGTTAACCGGCTCCACCGTGTCCCCGGGAATTGCCTGGGGAACCTATTAGCAA TGATCCGTGACCAAGCGCCAAACATAGTAACAGTAGTTGAGCAAGAAGCAAGCCATAACGGACCATACTTCTTAGGTAGGTTCCTGGAGGCATTGCACTA TTATTCAGCAATTTTTGACTCTTTGGATTCAACTTTTCCGCCAGATTCTTCACAAAGGGCAAAAGTGGAGCAGTACATATTTGCTCCAGAGATAAGGAAC ATAGTGGCATGTGAGGGAGCAGAGAGGTTTGAGAGACATGAGAGGCTTGAGAAATGGAGGAAGCTAATGGAAGGGAAAGGGTTTAAGGGGGTGCCACTGA GTGCAAATGCAGTGACTCAGTCCAAGATCTTATTGGGCTTGTATTCCTGTGATGGGTACAGATTGACAGAGGACAAAGGCTGCTTGCTCTTGGGGTGGCA AGATAGAGCCATACTTGCTGCTTCTGCATGGAGATGCTGA
AA sequence Show only first row Show all	>Potri.001G326000.2 pacid=42789814 polypeptide=Potri.001G326000.2.p locus=Potri.001G326000 ID=Potri.001G326000.2.v4.1 annot-version=v4.1 MINALCGSMGSLKSENSCNKLQPTSPNESSSVTESKKTTQSFEFEQNSLTPTSLNLPAVKFELDGDVEVQSPDSSMWESFFTDNFDSDFMISSPVRNLPS PQTSSYNHNYAHAMQGQSLSGCSPPRYLSQLGAAFSSIHKGKGQSPLHRMCNSPNNQFMQVESLSLPGIEDFLDDFQRDGYGEGYQQPPKMSGSSGSSTQ LFDMSTTVPAMLDCLTIQNPSRFCSGSVSETSSGSPMTQESDIFQMGSIGIAPSSQKLLQENQQQPQPLPQPTTQPQPPPTTQSLQQQPQSLNHTLMVSL PIGSEQEQDSGLQLLNLLLACAEAVSNEDYMLARRYLHHLNRVVSPLGDSMQRVASCFTEALSARLAATLTTKPSTSSSKAFSPFPPNSMEILKIYQILY QACPYVKFAHFTANQAIFEAFETEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGSSMENVRETGRCLTELAHSLHVPFEYHPVAEELVDLK PHMFNRRVGEALAVNSVNRLHRVPGNCLGNLLAMIRDQAPNIVTVVEQEASHNGPYFLGRFLEALHYYSAIFDSLDSTFPPDSSQRAKVEQYIFAPEIRN IVACEGAERFERHERLEKWRKLMEGKGFKGVPLSANAVTQSKILLGLYSCDGYRLTEDKGCLLLGWQDRAILAASAWRC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G66350	GRAS	RGL1	RGA-like 1 (.1)		Potri.001G326000 [exp]	0	1
AT3G08680			Leucine-rich repeat protein ki...		Potri.011G088000 [exp]	1.73	0.9991
AT5G59090		ATSBT4.12	subtilase 4.12 (.1.2.3)		Potri.012G133200 [exp]	2.44	0.9990
AT4G12420		SKU5	Cupredoxin superfamily protein...		Potri.008G032200 [exp]	4.24	0.9988
					Potri.002G158600 [exp]	4.58	0.9982
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Potri.018G033500 [exp]	5.29	0.9986	PtrAMT4-2
					Potri.003G126200 [exp]	5.91	0.9982
AT1G68040			S-adenosyl-L-methionine-depend...		Potri.010G104800 [exp]	6.00	0.9982
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Potri.005G216000 [exp]	6.00	0.9980	3
					Potri.005G130750 [exp]	6.63	0.9975
AT3G17675			Cupredoxin superfamily protein...		Potri.013G061300 [exp]	7.48	0.9982

Compare expression of checked genes

Potri.001G326000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.