Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01980 323 / 6e-112 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3), NAD(P)-binding Rossmann-fold superfamily protein (.4) AT1G62610 116 / 4e-31 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3), NAD(P)-binding Rossmann-fold superfamily protein (.4) AT3G55290 115 / 2e-30 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G63380 115 / 2e-30 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G17845 114 / 4e-30 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G46170 113 / 9e-30 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G55310 110 / 1e-28 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29150 65 / 4e-12 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47130 62 / 4e-11 AtSDR3 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47120 59 / 5e-10 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G067332 [exp] 456 / 2e-164 AT3G01980 323 / 4e-112 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3), NAD(P)-binding Rossmann-fold superfamily protein (.4) Potri.016G035200 [exp] 115 / 1e-30 AT3G55290 385 / 8e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.016G073900 [exp] 66 / 1e-12 AT3G51680 252 / 2e-83 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206400 [exp] 64 / 1e-11 AT3G51680 245 / 2e-80 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073700 [exp] 63 / 2e-11 AT1G52340 242 / 1e-79 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G039500 [exp] 62 / 3e-11 AT2G29150 351 / 5e-123 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.012G125900 [exp] 62 / 4e-11 AT3G12800 421 / 9e-150 short-chain dehydrogenase-reductase B (.1) Potri.001G024300 [exp] 62 / 5e-11 AT1G52340 408 / 6e-145 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G200100 [exp] 62 / 5e-11 AT3G26770 257 / 2e-85 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012548 [exp] 381 / 6e-135 AT3G01980 337 / 2e-117 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3), NAD(P)-binding Rossmann-fold superfamily protein (.4) Lus10041545 [exp] 381 / 9e-135 AT3G01980 346 / 6e-121 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3), NAD(P)-binding Rossmann-fold superfamily protein (.4) Lus10006699 [exp] 119 / 6e-32 AT3G46170 404 / 2e-143 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10007038 [exp] 109 / 3e-28 AT1G63380 357 / 7e-125 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10007039 [exp] 106 / 5e-27 AT3G55290 369 / 3e-129 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10006698 [exp] 90 / 5e-21 AT1G63380 385 / 5e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10018323 [exp] 71 / 4e-14 AT3G12800 395 / 4e-139 short-chain dehydrogenase-reductase B (.1) Lus10014227 [exp] 70 / 1e-13 AT3G51680 231 / 3e-75 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10017129 [exp] 68 / 5e-13 AT3G12800 391 / 7e-138 short-chain dehydrogenase-reductase B (.1) Lus10006696 [exp] 64 / 1e-12 AT3G46170 78 / 1e-32 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00106 [poplar] [flax] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Potri.001G327800.2 pacid=42790558 polypeptide=Potri.001G327800.2.p locus=Potri.001G327800 ID=Potri.001G327800.2.v4.1 annot-version=v4.1 ATGGGGAGTGGCGTGAAGAAAGTGTTGCTTACTTCAAATGGAGATGAGATTTCGCAGAATATCGCGTTTCATTTGGTTAAACAAGGATGCAGGTTGGTTT TGATGGGAAATGAAAAGGGTTTAAGGAGTATCGGTGAGAAGATAACAGGTGCAATCAAAGGTGCTTTGCCAGTGGAGGTAGTGGAAATGGATATGGAAGA GGAAAGGGAGGCAAGTTTTGAAGAGGCAGTGGACAAGGCATGTGGGATTTTGGGGAATTTAGATGCTTTTGTGCATTGCTATACATATGAAGGAAAGATT CAAGAACCTCTGCAAGTAACAGAACATGAGTTCAAAAAATTAGTGAAAATAAATTTTATGGCTCCATGGTTTCTGCTGAAGGCTGTTGGAAAAAAAATGC GGGACTATAATTCAGGAGGCTCCATTATATTCTTGACCTCAATAATTGGTGCTGAGAGAGGACTGTATCCAGGGGCTGCTGCATATGGTTCATGTTCAGC AGGAATACAGCAATTAGTTAGACATTCAGCTATGGAGATAGGAACATACAAGATCAGGGTTAATGGAATCGCTCGTGGTTTGCACCTAGAAGATGCATAT CCTGTTTCAGAAGGGAAGGAGAGGGCAGAGAAGTTGGTGAAAGAGGTAGTGCCGATGCAGAGATGGCTTGATGCCAAGAAGGATGTAGCATCAACTGTCA TCTACTTAATCAGTGATGGTTCAAGATACATGACTGGGACAACCATATTTCTTGACGGGGGGCAGTCCTTGACAAGGCCTAGGATGCGCTCATACATGTA G
AA sequence Show only first row Show all	>Potri.001G327800.2 pacid=42790558 polypeptide=Potri.001G327800.2.p locus=Potri.001G327800 ID=Potri.001G327800.2.v4.1 annot-version=v4.1 MGSGVKKVLLTSNGDEISQNIAFHLVKQGCRLVLMGNEKGLRSIGEKITGAIKGALPVEVVEMDMEEEREASFEEAVDKACGILGNLDAFVHCYTYEGKI QEPLQVTEHEFKKLVKINFMAPWFLLKAVGKKMRDYNSGGSIIFLTSIIGAERGLYPGAAAYGSCSAGIQQLVRHSAMEIGTYKIRVNGIARGLHLEDAY PVSEGKERAEKLVKEVVPMQRWLDAKKDVASTVIYLISDGSRYMTGTTIFLDGGQSLTRPRMRSYM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G01980			NAD(P)-binding Rossmann-fold s...		Potri.001G327800 [exp]	0	1
AT1G01980		ATSEC1A	FAD-binding Berberine family p...		Potri.011G158500 [exp]	4.12	0.8603
AT1G35520	ARF	ARF15	auxin response factor 15 (.1)		Potri.012G012950 [exp]	7.74	0.8489
AT2G38740			Haloacid dehalogenase-like hyd...		Potri.001G147300 [exp]	8.48	0.7794
AT3G55290			NAD(P)-binding Rossmann-fold s...		Potri.016G035200 [exp]	18.33	0.8152
					Potri.001G125100 [exp]	29.08	0.7945
AT5G19380		CLT1	CRT (chloroquine-resistance tr...		Potri.009G069400 [exp]	42.13	0.7502
AT4G01500	B3	NGA4	NGATHA4, AP2/B3-like transcrip...		Potri.012G013700 [exp]	44.89	0.8086
AT5G60570			Galactose oxidase/kelch repeat...		Potri.019G042100 [exp]	45.57	0.7733
AT5G57150	bHLH	bHLH035	basic helix-loop-helix (bHLH) ...		Potri.018G141700 [exp]	65.07	0.7716
AT1G75280			NmrA-like negative transcripti...		Potri.007G123700 [exp]	68.22	0.7944	PCBERp2

Compare expression of checked genes

Potri.001G327800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.