Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27120 400 / 2e-137 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G45500 219 / 1e-66 AAA-type ATPase family protein (.1.2) AT1G80350 180 / 1e-51 FTR, FRC2, FRA2, BOT1, ATKTN1, AAA1, LUE1, ERH3, MAD5 KATANIN 1, FAT ROOT, FURCA2, FRAGILE FIBER 2, ECTOPIC ROOT HAIR 3, BOTERO 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G19740 174 / 1e-47 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G34560 166 / 2e-47 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT4G28000 168 / 6e-46 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G50140 167 / 2e-45 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G52882 161 / 2e-43 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G64110 159 / 1e-42 DAA1 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT2G27600 154 / 1e-42 ATSKD1, VPS4, SKD1 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G331200 [exp] 402 / 3e-135 AT3G27120 661 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.014G071900 [exp] 218 / 3e-66 AT2G45500 696 / 0.0 AAA-type ATPase family protein (.1.2) Potri.003G057800 [exp] 179 / 4e-51 AT1G80350 814 / 0.0 KATANIN 1, FAT ROOT, FURCA2, FRAGILE FIBER 2, ECTOPIC ROOT HAIR 3, BOTERO 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.011G085200 [exp] 172 / 1e-49 AT2G34560 577 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.001G176900 [exp] 175 / 2e-49 AT1G80350 809 / 0.0 KATANIN 1, FAT ROOT, FURCA2, FRAGILE FIBER 2, ECTOPIC ROOT HAIR 3, BOTERO 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.004G065100 [exp] 170 / 6e-49 AT2G34560 600 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.001G097600 [exp] 171 / 5e-47 AT1G64110 1159 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.003G133700 [exp] 167 / 2e-45 AT1G64110 1145 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.004G184500 [exp] 158 / 4e-44 AT2G27600 740 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041563 [exp] 388 / 2e-129 AT3G27120 679 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10012530 [exp] 301 / 1e-98 AT3G27120 582 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10038001 [exp] 224 / 6e-69 AT2G45500 679 / 0.0 AAA-type ATPase family protein (.1.2) Lus10009233 [exp] 222 / 5e-68 AT2G45500 670 / 0.0 AAA-type ATPase family protein (.1.2) Lus10023115 [exp] 180 / 2e-51 AT1G80350 906 / 0.0 KATANIN 1, FAT ROOT, FURCA2, FRAGILE FIBER 2, ECTOPIC ROOT HAIR 3, BOTERO 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10011477 [exp] 179 / 3e-51 AT1G80350 904 / 0.0 KATANIN 1, FAT ROOT, FURCA2, FRAGILE FIBER 2, ECTOPIC ROOT HAIR 3, BOTERO 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10038499 [exp] 171 / 4e-49 AT2G34560 579 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10028752 [exp] 171 / 6e-47 AT1G64110 1165 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10017535 [exp] 169 / 4e-46 AT1G64110 1157 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10010204 [exp] 166 / 8e-45 AT3G19740 1242 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00004 [poplar] [flax] AAA ATPase family associated with various cellular activities (AAA) CL0671 [poplar] [flax] AAA_lid PF09336 [poplar] [flax] Vps4_C Vps4 C terminal oligomerisation domain
Representative CDS sequence Show only first row Show all	>Potri.001G331300.2 pacid=42788155 polypeptide=Potri.001G331300.2.p locus=Potri.001G331300 ID=Potri.001G331300.2.v4.1 annot-version=v4.1 ATGCATCCATCGGCAGCCCAGTTCTACAAGTATCTTGCACGACCAAACTTTCCTCCGAATCCGTACATATTGTCGCCAGTAAATGGATCGGCCCTAAATG CTCAATTGCGACTCAAAGCACCGGCCTCTCCTCCAGGTCAAAACAATCCCCTAAGTTTGCAGATACCTCATTTTACAGAAATGGGCAGTAGCTCAACAGA TGGGACGAGAAAGAAAAGTTTGGAGATGTTGAGAGGTCCTGATGACCAGCTACCTGAAAAATTACGACATTTGGAACCTCATCTGCTTGAACGAATTATA TATGAGATCATGGATACGGATCTTAATGTTTGCTGGGATGATATTGCTGGTCTTGAGCATGCCAAAAAAAGTGTCACTCAGATGGTGGTATGGCCTTTAA TGCGTCCTGACATATTTAAGGGTTGTCGTGATCTTGGGAGTGGCCTTCTTCTATTTGGTCCACCGGGAACATGTAAAACTATGATGGCGAAAACTATAGC TGGAGAGATGAAAGCAGCCTTTTTCCATTTATCTGCCAGAACATTAGCTACCAAATGGGTTGCCGATTCTGAAAAGGTGGTGAGGACACTTTTTGGAATA GCCCGTTGTATGCAGCCAGCAGTCATTTTCTGTGATGAGATTGATTTAATACTAAATAAGAGTACAACGTATGCACACCAATACAGCAGGCGTCTCAAGA TGCAGTTCCTAACTGAGATGGAAAGCATGGACAACAAGACTGCTCGGATTTTGCTTATAGGTGCGACAAGTAGACCTCATGATCTCGATGATGTTGCCCT AAAACACCTAACCAGAAGACTGCATATGCCCTTGCCTTCACCAGAAGCAAGATCATATATCATTAGCAATCTATTGAAGAAGGATGGATTATTTTCCTTA TCTGAAAAAGACTTGAACACTATTTGCTGCTTAACTGAAGGGTATTCAGGTTCTGATATGGCAATCTTAGTGAAAACCGCTGCCATGGGTCCGCTAAGAG ATGCTATGAAAGACGGTCTTAAGGATATAGAAAACTTGGAAGCAGAGAAGCTGAGAGCAGTGACCCTTGAGGACTTCTGGACTTCAATGCAAGCAGTAAG GCCTTCAGTTTCACCAAATGAAACTGGTGCACATGCTCATTGGAACCTGCAGTTTGGCAGCATGTCACTGTAG
AA sequence Show only first row Show all	>Potri.001G331300.2 pacid=42788155 polypeptide=Potri.001G331300.2.p locus=Potri.001G331300 ID=Potri.001G331300.2.v4.1 annot-version=v4.1 MHPSAAQFYKYLARPNFPPNPYILSPVNGSALNAQLRLKAPASPPGQNNPLSLQIPHFTEMGSSSTDGTRKKSLEMLRGPDDQLPEKLRHLEPHLLERII YEIMDTDLNVCWDDIAGLEHAKKSVTQMVVWPLMRPDIFKGCRDLGSGLLLFGPPGTCKTMMAKTIAGEMKAAFFHLSARTLATKWVADSEKVVRTLFGI ARCMQPAVIFCDEIDLILNKSTTYAHQYSRRLKMQFLTEMESMDNKTARILLIGATSRPHDLDDVALKHLTRRLHMPLPSPEARSYIISNLLKKDGLFSL SEKDLNTICCLTEGYSGSDMAILVKTAAMGPLRDAMKDGLKDIENLEAEKLRAVTLEDFWTSMQAVRPSVSPNETGAHAHWNLQFGSMSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G27120			P-loop containing nucleoside t...		Potri.001G331300 [exp]	0	1
AT1G75220		AtERDL6	ERD6-like 6, Major facilitator...		Potri.005G122550 [exp]	1.00	0.9488
					Potri.014G092050 [exp]	2.64	0.8843
AT4G25950		VATG3	vacuolar ATP synthase G3 (.1)		Potri.019G080700 [exp]	3.60	0.8296
AT2G23240		AtMT4b	Arabidopsis thaliana metalloth...		Potri.009G167700 [exp]	5.47	0.8236
AT5G65840			Thioredoxin superfamily protei...		Potri.007G007201 [exp]	5.65	0.8957
AT1G67670			unknown protein		Potri.010G054700 [exp]	5.65	0.8668
					Potri.015G072732 [exp]	7.34	0.8888
AT3G48750		CDKA1, CDC2A, C...	cell division control 2 (.1)		Potri.008G008400 [exp]	7.74	0.7851
AT1G47230		CYCA3;4	CYCLIN A3;4 (.1.2)		Potri.008G008551 [exp]	7.74	0.8618
AT5G49460		ACLB-2	ATP citrate lyase subunit B 2 ...		Potri.010G145766 [exp]	9.94	0.8573

Compare expression of checked genes

Potri.001G331300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.