Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-LHT1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40780 753 / 0 LHT1, LTH1 lysine histidine transporter 1 (.1.2) AT1G24400 682 / 0 ATLHT2, AATL2, LHT2 ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, lysine histidine transporter 2 (.1) AT1G48640 682 / 0 Transmembrane amino acid transporter family protein (.1) AT1G67640 654 / 0 Transmembrane amino acid transporter family protein (.1) AT1G61270 559 / 0 Transmembrane amino acid transporter family protein (.1) AT3G01760 547 / 0 Transmembrane amino acid transporter family protein (.1) AT1G25530 535 / 0 Transmembrane amino acid transporter family protein (.1) AT1G71680 488 / 4e-171 Transmembrane amino acid transporter family protein (.1) AT1G47670 292 / 1e-93 Transmembrane amino acid transporter family protein (.1) AT4G35180 213 / 7e-64 LHT7 LYS/HIS transporter 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G335200 [exp] 719 / 0 AT5G40780 697 / 0.0 lysine histidine transporter 1 (.1.2) Potri.008G179000 [exp] 688 / 0 AT1G24400 654 / 0.0 ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, lysine histidine transporter 2 (.1) Potri.010G055800 [exp] 683 / 0 AT5G40780 670 / 0.0 lysine histidine transporter 1 (.1.2) Potri.015G091600 [exp] 629 / 0 AT5G40780 610 / 0.0 lysine histidine transporter 1 (.1.2) Potri.010G128300 [exp] 550 / 0 AT1G25530 687 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.008G118000 [exp] 546 / 0 AT1G25530 677 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.014G036500 [exp] 304 / 3e-98 AT1G47670 922 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.002G012900 [exp] 288 / 9e-92 AT1G47670 577 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.004G181200 [exp] 269 / 1e-84 AT1G47670 504 / 3e-175 Transmembrane amino acid transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022329 [exp] 769 / 0 AT5G40780 798 / 0.0 lysine histidine transporter 1 (.1.2) Lus10041581 [exp] 769 / 0 AT5G40780 798 / 0.0 lysine histidine transporter 1 (.1.2) Lus10014605 [exp] 721 / 0 AT5G40780 744 / 0.0 lysine histidine transporter 1 (.1.2) Lus10014606 [exp] 712 / 0 AT5G40780 746 / 0.0 lysine histidine transporter 1 (.1.2) Lus10041580 [exp] 610 / 0 AT5G40780 652 / 0.0 lysine histidine transporter 1 (.1.2) Lus10032074 [exp] 560 / 0 AT5G40780 535 / 0.0 lysine histidine transporter 1 (.1.2) Lus10041482 [exp] 524 / 0 AT1G25530 666 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10008263 [exp] 501 / 6e-175 AT1G71680 572 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10034283 [exp] 449 / 3e-157 AT1G25530 542 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10032073 [exp] 414 / 4e-143 AT5G40780 451 / 8e-158 lysine histidine transporter 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF01490 [poplar] [flax] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Potri.001G335300.1 pacid=42788835 polypeptide=Potri.001G335300.1.p locus=Potri.001G335300 ID=Potri.001G335300.1.v4.1 annot-version=v4.1 ATGGGTGTTGAAACTACCAACAATGATCATGGCTACACCCAGAAAGAGGATGATGAAGTAGCAAGGCAGAAGGCAATTGATGATTGGCTTCCAATTACTT CTTCAAGGAATGCAAAATGGTGGTACTCAGCTTTCCACAATGTCACTGCCATGGTTGGAGCTGGTGTCCTCAGTCTCCCCTATGCCATGTCAGAGCTTGG ATGGGGTCCTGGTGTGGCTGTGCTAATCCTATCATGGATCATCACGCTATACACACTATGGCAAATGGTTGAGATGCATGAAATGGTGCCAGGAAAGAGA TTTGATAGATATCATGAACTTGGTCAACATGCTTTTGGTGAAAAGCTTGGCCTCTACATTGTTGTGCCGCAGCAACTTATTGTTGAAGTTGGTGTGTGCA TTGTGTACATGGTTACTGGGGGCAAATCATTGAAGAAGTTCCATGATATTGTGTGCAGCACATGCAAACCGATCAAACAAACCTACTTCATTATGATTTT TGCCTCTGTTCACTTTGTGCTCTCCCATCTCCCCAACTTCAACTCCATCTCTGGTGTCTCTCTGGCAGCTGCAGTCATGTCCTTGAGTTATTCCACGATT GCTTGGTCGGCTGCTGTTGATAAGGGTGTTCAGCCAGATGTGCAATATGGATATAAAGCTACTACTAAGGTAGGAACAGTCTTTAACTTCTTCAGTGCCC TGGGTGATGTGGCTTTTGCTTACGCTGGGCACAATGTGGTCTTGGAGATTCAAGCAACAATCCCATCTACACCTGAGAAGCCATCCAAAGGACCTATGTG GAGAGGAGTCATAGTTGCCTATATAGTGGTGGCTTTGTGCTATTTCCCTGTTGCTCTAATTGGGTACTGGATCTATGGAAATTCAATCTCCGACAACATC CTCATCACATTGGAGAAGCCTGTATGGCTTATTGCAATGGCTAACATGTTTGTTGTGGTCCATGTTATTGGAAGCTACCAGATTTATGCTATGCCAGTGT TTGACATGATGGAAACTGTGTTAGTAAAGAAATTGAATTTCCGGCCCACTATGATTCTTCGTTTCTTTGTACGCAATATTTATGTTGCATTCACAATGTT TGTTGGCATTACCTTCCCTTTCTTTGGTGGTCTTCTTGGATTTTTTGGAGGATTTGCTTTTGCCCCGACTACATACTTTCTCCCTTGCGTAATGTGGCTT GCCATCTACAAACCAAAGAAGTTTGGCTTATCTTGGTGGGCTAACTGGATCTGCATTGTCTTCGGCGTTATCTTGATGATTGTATCACCCATTGGAGGGA TGAGGCAAATCATAATTCAAGCCAAGGACTACAAGTTCTACAATTGA
AA sequence Show only first row Show all	>Potri.001G335300.1 pacid=42788835 polypeptide=Potri.001G335300.1.p locus=Potri.001G335300 ID=Potri.001G335300.1.v4.1 annot-version=v4.1 MGVETTNNDHGYTQKEDDEVARQKAIDDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMSELGWGPGVAVLILSWIITLYTLWQMVEMHEMVPGKR FDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLKKFHDIVCSTCKPIKQTYFIMIFASVHFVLSHLPNFNSISGVSLAAAVMSLSYSTI AWSAAVDKGVQPDVQYGYKATTKVGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVIVAYIVVALCYFPVALIGYWIYGNSISDNI LITLEKPVWLIAMANMFVVVHVIGSYQIYAMPVFDMMETVLVKKLNFRPTMILRFFVRNIYVAFTMFVGITFPFFGGLLGFFGGFAFAPTTYFLPCVMWL AIYKPKKFGLSWWANWICIVFGVILMIVSPIGGMRQIIIQAKDYKFYN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Potri.001G335300 [exp]	0	1	Pt-LHT1.2
AT1G76360			Protein kinase superfamily pro...		Potri.005G251900 [exp]	1.00	0.9380
AT1G66930			Protein kinase superfamily pro...		Potri.017G117400 [exp]	1.41	0.9156
AT1G44350		ILL6	IAA-leucine resistant (ILR)-li...		Potri.002G082400 [exp]	1.73	0.9146
AT2G36800		UGT73C5, DOGT1	UDP-GLUCOSYL TRANSFERASE 73C5,...		Potri.012G048700 [exp]	2.00	0.9110	Pt-GT4.1
AT4G25700		BCH1, B1, CHY1,...	BETA CAROTENOID HYDROXYLASE 1,...		Potri.017G145700 [exp]	3.00	0.8821
AT5G14700			NAD(P)-binding Rossmann-fold s...		Potri.001G349600 [exp]	3.87	0.9034
AT5G25930			Protein kinase family protein ...		Potri.006G235800 [exp]	6.48	0.8980
AT5G25930			Protein kinase family protein ...		Potri.006G235500 [exp]	8.36	0.8937
					Potri.005G040650 [exp]	9.16	0.8754
AT4G15120			VQ motif-containing protein (....		Potri.016G017900 [exp]	10.53	0.8427

Compare expression of checked genes

Potri.001G335300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.