Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14340 275 / 5e-93 MYB AtMYB40 myb domain protein 40 (.1) AT5G16600 234 / 8e-76 MYB ATMYB43 myb domain protein 43 (.1) AT1G66230 228 / 5e-74 MYB ATMYB20 myb domain protein 20 (.1) AT4G22680 214 / 1e-68 MYB ATMYB85 myb domain protein 85 (.1) AT4G12350 206 / 2e-65 MYB ATMYB42 myb domain protein 42 (.1) AT3G02940 199 / 2e-62 MYB ATMYB107 myb domain protein 107 (.1) AT3G61250 198 / 2e-62 MYB LMI2, ATMYB17 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) AT5G62320 196 / 5e-62 MYB ATMYB99, AtMYBCU15 myb domain protein 99 (.1) AT5G15310 197 / 1e-61 MYB ATMYB16, ATMIXTA myb domain protein 16 (.1.2) AT4G09460 194 / 2e-61 MYB ATMYB6, ATMYB8 myb domain protein 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G180800 [exp] 244 / 2e-80 AT5G14340 229 / 1e-74 myb domain protein 40 (.1) Potri.017G130300 [exp] 230 / 2e-74 AT5G16600 280 / 2e-93 myb domain protein 43 (.1) Potri.004G086300 [exp] 228 / 2e-73 AT5G16600 284 / 7e-95 myb domain protein 43 (.1) Potri.001G118800 [exp] 225 / 6e-73 AT4G12350 303 / 1e-103 myb domain protein 42 (.1) Potri.003G114100 [exp] 221 / 1e-71 AT4G12350 300 / 1e-102 myb domain protein 42 (.1) Potri.012G127700 [exp] 210 / 3e-67 AT4G22680 256 / 2e-85 myb domain protein 85 (.1) Potri.015G129100 [exp] 209 / 5e-67 AT4G22680 249 / 1e-82 myb domain protein 85 (.1) Potri.002G157600 [exp] 199 / 3e-62 AT3G61250 363 / 3e-126 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Potri.007G093900 [exp] 199 / 4e-62 AT1G34670 289 / 6e-96 myb domain protein 93 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014569 [exp] 269 / 4e-90 AT5G14340 239 / 7e-79 myb domain protein 40 (.1) Lus10032117 [exp] 269 / 4e-90 AT5G14340 244 / 9e-81 myb domain protein 40 (.1) Lus10032226 [exp] 225 / 2e-72 AT4G12350 295 / 7e-100 myb domain protein 42 (.1) Lus10038913 [exp] 219 / 3e-71 AT1G66230 247 / 3e-82 myb domain protein 20 (.1) Lus10024589 [exp] 221 / 7e-71 AT4G12350 298 / 6e-101 myb domain protein 42 (.1) Lus10027197 [exp] 218 / 1e-70 AT1G66230 249 / 6e-83 myb domain protein 20 (.1) Lus10004043 [exp] 216 / 2e-68 AT1G66230 264 / 4e-87 myb domain protein 20 (.1) Lus10002296 [exp] 216 / 4e-68 AT1G66230 263 / 1e-86 myb domain protein 20 (.1) Lus10004042 [exp] 211 / 1e-66 AT1G66230 251 / 2e-81 myb domain protein 20 (.1) Lus10033003 [exp] 201 / 2e-62 AT5G15310 323 / 2e-109 myb domain protein 16 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.001G336700.1 pacid=42790072 polypeptide=Potri.001G336700.1.p locus=Potri.001G336700 ID=Potri.001G336700.1.v4.1 annot-version=v4.1 ATGGGAAGGCAACCTTGCTGCGATAAGGTTGGATTAAAAAGAGGTCCATGGACAATTGAGGAAGATCATAAGCTCACGAACTTTATCCTCAACAATGGTA TTCAATGCTGGCGAATGGTTCCTAAGCTTGCAGGTTTGCTAAGATGTGGAAAAAGCTGTAGACTAAGATGGATTAATTATCTGCGGCCGGATCTAAAGAG AGGTGGTTTTACAAAAATGGAAGACAATCAGATTATCCAGCTTCATTCACGTCTTGGCAACAGGTGGTCTAAGATTGCTTCACATTTTCCGGGCCGCACA GACAATGAAATCAAGAACCATTGGAATACTCGAATTAAGAAGAAGTTGAAGGTTCTTGGTTTAGACCCCGTGACCCACAAGCCCATTGAACAAACAGAGA AGGATGTTAGTGGTGAGGAGGATGAGACAATTCAAGAATCTGTTTCCTTAAAAGAACAAGAGGAAAGCTTGGAAGTCAAGTCAGAGGATCGTGATCAAGC CAAGAGTGATTTTGTACAAGAAAGAGATCAGAAACTTGAGCAAGATGAATTGAAGATATTGGATGAAACTGATCTTCTGAAGAGCTATGAAATGTTGTGT GGGAGCTTGGATGTGGGCTCATGGATTAATCAAGAAACCAACACATCTACTTCTTATAGTTCTCAAGAATCTAATAACCTTTCAGCTGGTGAATTCCATT CCATTCAAGAAGACTCTGTAAGTCAATGGATTGAGAGTGTGGACTCTTTTCTCTCATGGGACAGCTTCAGTCATCTAGATGAAGATCTTTTCTTCCTGGA AAATAGCCAATGTAATTACATGACGCATTCGGCCCCTAAGCGCCTCTAA
AA sequence Show only first row Show all	>Potri.001G336700.1 pacid=42790072 polypeptide=Potri.001G336700.1.p locus=Potri.001G336700 ID=Potri.001G336700.1.v4.1 annot-version=v4.1 MGRQPCCDKVGLKRGPWTIEEDHKLTNFILNNGIQCWRMVPKLAGLLRCGKSCRLRWINYLRPDLKRGGFTKMEDNQIIQLHSRLGNRWSKIASHFPGRT DNEIKNHWNTRIKKKLKVLGLDPVTHKPIEQTEKDVSGEEDETIQESVSLKEQEESLEVKSEDRDQAKSDFVQERDQKLEQDELKILDETDLLKSYEMLC GSLDVGSWINQETNTSTSYSSQESNNLSAGEFHSIQEDSVSQWIESVDSFLSWDSFSHLDEDLFFLENSQCNYMTHSAPKRL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G14340	MYB	AtMYB40	myb domain protein 40 (.1)		Potri.001G336700 [exp]	0	1
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.004G021100 [exp]	1.73	0.9658
					Potri.019G016100 [exp]	6.78	0.9666
AT5G10530			Concanavalin A-like lectin pro...		Potri.007G004200 [exp]	10.09	0.9625
AT3G01190			Peroxidase superfamily protein...		Potri.011G027300 [exp]	11.13	0.9644
AT1G52820			2-oxoglutarate (2OG) and Fe(II...		Potri.001G176200 [exp]	11.18	0.9630	AOP1.1
					Potri.001G019985 [exp]	12.68	0.9597
AT4G02780		ATCPS1, ABC33, ...	GA REQUIRING 1, CPP synthase, ...		Potri.002G052100 [exp]	13.85	0.9566	CPS.1
AT1G05160		ATKAO1, CYP88A3	ENT-KAURENOIC ACID OXYDASE 1, ...		Potri.012G071300 [exp]	16.12	0.9560
AT5G37990			S-adenosyl-L-methionine-depend...		Potri.017G121800 [exp]	16.49	0.9589
AT3G23530			Cyclopropane-fatty-acyl-phosph...		Potri.010G067700 [exp]	16.97	0.9584

Compare expression of checked genes

Potri.001G336700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.