Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01550 412 / 5e-143 ATPPT2 phosphoenolpyruvate (pep)/phosphate translocator 2 (.1) AT5G33320 393 / 6e-135 ARAPPT, CUE1 PHOSPHOENOLPYRUVATE/PHOSPHATE TRANSLOCATOR, CAB UNDEREXPRESSED 1, ARABIDOPSIS THALIANA PHOSPHATE/PHOSPHOENOLPYRUVATE TRANSLOCATOR, Glucose-6-phosphate/phosphate translocator-related (.1) AT5G17630 221 / 7e-68 Nucleotide/sugar transporter family protein (.1) AT5G54800 212 / 8e-65 ATGPT1, GPT1 ARABIDOPSIS GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 1, glucose 6-phosphate/phosphate translocator 1 (.1) AT1G61800 201 / 2e-60 ATGPT2, GPT2 ARABIDOPSIS GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, glucose-6-phosphate/phosphate translocator 2 (.1) AT5G46110 186 / 1e-54 TPT, APE2 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4) AT4G03950 102 / 1e-24 Nucleotide/sugar transporter family protein (.1) AT3G10290 73 / 5e-14 Nucleotide-sugar transporter family protein (.1) AT5G04160 69 / 6e-13 Nucleotide-sugar transporter family protein (.1) AT3G11320 69 / 7e-13 Nucleotide-sugar transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G077900 [exp] 423 / 1e-146 AT5G33320 517 / 0.0 PHOSPHOENOLPYRUVATE/PHOSPHATE TRANSLOCATOR, CAB UNDEREXPRESSED 1, ARABIDOPSIS THALIANA PHOSPHATE/PHOSPHOENOLPYRUVATE TRANSLOCATOR, Glucose-6-phosphate/phosphate translocator-related (.1) Potri.012G082100 [exp] 415 / 1e-143 AT5G33320 458 / 1e-160 PHOSPHOENOLPYRUVATE/PHOSPHATE TRANSLOCATOR, CAB UNDEREXPRESSED 1, ARABIDOPSIS THALIANA PHOSPHATE/PHOSPHOENOLPYRUVATE TRANSLOCATOR, Glucose-6-phosphate/phosphate translocator-related (.1) Potri.013G071900 [exp] 218 / 2e-66 AT5G17630 526 / 0.0 Nucleotide/sugar transporter family protein (.1) Potri.001G420200 [exp] 207 / 1e-62 AT5G54800 563 / 0.0 ARABIDOPSIS GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 1, glucose 6-phosphate/phosphate translocator 1 (.1) Potri.011G135900 [exp] 204 / 1e-61 AT5G54800 583 / 0.0 ARABIDOPSIS GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 1, glucose 6-phosphate/phosphate translocator 1 (.1) Potri.004G019900 [exp] 201 / 1e-60 AT1G61800 592 / 0.0 ARABIDOPSIS GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, glucose-6-phosphate/phosphate translocator 2 (.1) Potri.011G057800 [exp] 191 / 2e-56 AT5G46110 627 / 0.0 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4) Potri.004G048900 [exp] 180 / 2e-53 AT5G46110 539 / 0.0 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4) Potri.008G095200 [exp] 183 / 3e-53 AT5G46110 454 / 5e-159 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013083 [exp] 444 / 5e-155 AT3G01550 429 / 1e-149 phosphoenolpyruvate (pep)/phosphate translocator 2 (.1) Lus10042110 [exp] 414 / 5e-143 AT5G33320 528 / 0.0 PHOSPHOENOLPYRUVATE/PHOSPHATE TRANSLOCATOR, CAB UNDEREXPRESSED 1, ARABIDOPSIS THALIANA PHOSPHATE/PHOSPHOENOLPYRUVATE TRANSLOCATOR, Glucose-6-phosphate/phosphate translocator-related (.1) Lus10002385 [exp] 385 / 7e-132 AT5G33320 485 / 2e-171 PHOSPHOENOLPYRUVATE/PHOSPHATE TRANSLOCATOR, CAB UNDEREXPRESSED 1, ARABIDOPSIS THALIANA PHOSPHATE/PHOSPHOENOLPYRUVATE TRANSLOCATOR, Glucose-6-phosphate/phosphate translocator-related (.1) Lus10022257 [exp] 315 / 3e-106 AT3G01550 264 / 1e-87 phosphoenolpyruvate (pep)/phosphate translocator 2 (.1) Lus10011155 [exp] 205 / 5e-62 AT5G54800 581 / 0.0 ARABIDOPSIS GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 1, glucose 6-phosphate/phosphate translocator 1 (.1) Lus10043060 [exp] 202 / 2e-60 AT5G54800 580 / 0.0 ARABIDOPSIS GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 1, glucose 6-phosphate/phosphate translocator 1 (.1) Lus10007653 [exp] 198 / 1e-59 AT1G61800 559 / 0.0 ARABIDOPSIS GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, glucose-6-phosphate/phosphate translocator 2 (.1) Lus10018356 [exp] 196 / 7e-59 AT1G61800 557 / 0.0 ARABIDOPSIS GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, glucose-6-phosphate/phosphate translocator 2 (.1) Lus10004312 [exp] 196 / 3e-58 AT5G17630 484 / 4e-171 Nucleotide/sugar transporter family protein (.1) Lus10019209 [exp] 195 / 3e-58 AT5G17630 480 / 2e-169 Nucleotide/sugar transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF03151 [poplar] [flax] TPT Triose-phosphate Transporter family
Representative CDS sequence Show only first row Show all	>Potri.001G347300.2 pacid=42791583 polypeptide=Potri.001G347300.2.p locus=Potri.001G347300 ID=Potri.001G347300.2.v4.1 annot-version=v4.1 ATGCTGAGGACGGCATTAGCTCTGTCTCTTTCAACCCCAGTTCTTAGACCACAAAAACCTTTATATGTTCACTCTAGCCCCAGATTTAGCCCATGTATTA ACCTCCCTTCTTTAAAACCGCTTGATACTGTTTGCTGCCATGGCTTCTCTCGTCGAAAAACTTCCCTGTCAGGTTGTTGTTTGAGTTGCAATACTCGAAT CTCTGCATTTATCTGTCGAAATCATGGATATGGCAGTATCAAGGTCCGGGCTGCCTCAGTTCCTGACAGTACTGGTGAATTTGAGAAATCAAGTGATGCG GCTAGGACAATGCAGCTAGGTGCTATGTTTGGAATTTGGTATCTTTTGAATATCTACTTCAACATCTTTAACAAGCAGGTTCTGAAGGTGTATCCATTTC CAGCAACAATTACAGCATTCCAAGTTGGCTGTGGGACTGTGATGATCATCATAATGTGGGCACTAAATCTCTGCAACAGACCAAAGCTTACTCGTCCACA GATTTTAGCAATCCTACCTTTGGCTGTAGCACACACATTTGGTAACCTTCTTACTAATGTTAGTCTGGGAAAGGTTGCTGTCTCATTCACTCATACAATC AAAGCTTTGGAACCCTTTTTCACAGTGTTATTTGCTGCATTGTTTCTTGGCGAGACGCCTGCTTTCTGGGTACTTTCCTCCCTTGTGCCACTAGTAGGTG GAGTAGGCTTGGCATCATTAACTGAGGTCTCTTTTAATTGGATCGGTTTCTGTAGTGCAATGGCTTCCAATGTGACTAACCAGTCACGAAATGTATTTAG CAAAAAGTTGATGGTTAACAAAGAGGAAACTTTGGACAACGTCAATCTCTTCTCTGTCATAACCATCATTTCTTTTATCCTGCTGGTTCCTGCTGCTATT TTCATGGAAGGCTTTAAGTTTACTCCATCATACCTGCAGTCTGCTGCAAACCAAGGGTTGAATGTTAAAGAGCTATGCATAAGATCTCTTCTCGCCGGAT TCTGCTTCCACTCTTATCAACAAGTCTCCTACATGATATTACAGATGGTAGATCCTGTCACACATGCTGTTGGAAATTGCGTGAAGCGTGTGGTGGTCAT AGTCTCATCAGTCATCTTCTTTCAAACTCCTGTGTCGCCCATAAACTCCATTGGAACTGCTATGGCCCTTGCTGGAGTCTTCTTGTATTCAAGAGCAAAG CGGGTGAAGTCGAAGACAAAGCCAAAGGCTGCATGA
AA sequence Show only first row Show all	>Potri.001G347300.2 pacid=42791583 polypeptide=Potri.001G347300.2.p locus=Potri.001G347300 ID=Potri.001G347300.2.v4.1 annot-version=v4.1 MLRTALALSLSTPVLRPQKPLYVHSSPRFSPCINLPSLKPLDTVCCHGFSRRKTSLSGCCLSCNTRISAFICRNHGYGSIKVRAASVPDSTGEFEKSSDA ARTMQLGAMFGIWYLLNIYFNIFNKQVLKVYPFPATITAFQVGCGTVMIIIMWALNLCNRPKLTRPQILAILPLAVAHTFGNLLTNVSLGKVAVSFTHTI KALEPFFTVLFAALFLGETPAFWVLSSLVPLVGGVGLASLTEVSFNWIGFCSAMASNVTNQSRNVFSKKLMVNKEETLDNVNLFSVITIISFILLVPAAI FMEGFKFTPSYLQSAANQGLNVKELCIRSLLAGFCFHSYQQVSYMILQMVDPVTHAVGNCVKRVVVIVSSVIFFQTPVSPINSIGTAMALAGVFLYSRAK RVKSKTKPKAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G01550		ATPPT2	phosphoenolpyruvate (pep)/phos...		Potri.001G347300 [exp]	0	1
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Potri.004G064500 [exp]	2.44	0.9977
AT5G04820	OFP	ATOFP13, OFP13	ARABIDOPSIS THALIANA OVATE FAM...		Potri.006G205500 [exp]	7.07	0.9972
AT1G54820			Protein kinase superfamily pro...		Potri.005G036600 [exp]	7.14	0.9975
					Potri.002G252200 [exp]	7.34	0.9961
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Potri.006G142600 [exp]	7.48	0.9975
					Potri.015G054900 [exp]	7.87	0.9959
AT1G33811			GDSL-like Lipase/Acylhydrolase...		Potri.013G102400 [exp]	9.59	0.9973
AT3G24420			alpha/beta-Hydrolases superfam...		Potri.016G062700 [exp]	13.63	0.9972
AT4G00165			Bifunctional inhibitor/lipid-t...		Potri.014G059800 [exp]	14.73	0.9971
AT5G62360			Plant invertase/pectin methyle...		Potri.015G128400 [exp]	15.74	0.9971

Compare expression of checked genes

Potri.001G347300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.