Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30450 1458 / 0 HAP5, ATCCC1, CCC1 HAPLESS 5, cation-chloride co-transporter 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G090900 [exp] 1667 / 0 AT1G30450 1456 / 0.0 HAPLESS 5, cation-chloride co-transporter 1 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036156 [exp] 1444 / 0 AT1G30450 1536 / 0.0 HAPLESS 5, cation-chloride co-transporter 1 (.1.2.3) Lus10003407 [exp] 1428 / 0 AT1G30450 1520 / 0.0 HAPLESS 5, cation-chloride co-transporter 1 (.1.2.3) Lus10000067 [exp] 380 / 3e-125 AT1G30450 403 / 6e-135 HAPLESS 5, cation-chloride co-transporter 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF00324 [poplar] [flax] AA_permease Amino acid permease CL0062 [poplar] [flax] PF03522 [poplar] [flax] SLC12 Solute carrier family 12
Representative CDS sequence Show only first row Show all	>Potri.001G357600.2 pacid=42787543 polypeptide=Potri.001G357600.2.p locus=Potri.001G357600 ID=Potri.001G357600.2.v4.1 annot-version=v4.1 ATGGACAACGGAGATATTGAAGGTGGTGGTGGTTTAGAAGACGAATTCCACACCAACCAGAGTGGTCGCAAATACAGGCCTGTGGTGGCTCACGATCCCG CCGTCCTTGAGATGTCCTCCATTCCTCCCGGATCCTCCTCCTCCAATCACCAATCTAGCCTCAAGAAAATCATACCAGGAGGTTCCACCCAAGCAAAAAC AAACACGAATACTGGTGGTGTGAATGATAATAGTACAAATGGGTCAGAGAGGGAGCACAAGTTGGAATTGTTTGGTTTTGATTCCCTTGTCAATATTCTT GGTCTTAAGAGTATGACAGGGGAGCCAGTAGCCGCACCGTCCAGTCCCAGGGATGGTGAAGATGGTTCTATCTCTTTTGATCGAGATCGCCCAAGGCCCA ATGACCTTAAACTGGGAACAATGATGGGTGTTTTCATCCCATGCTTGCAAAACATACTTGGAATTATCTACTACATTCGATTTTCGTGGATTGTTGGCAT GGCTGGTATAGGTGAATCTCTAGTGCTGGTAGCTTTTTGTGGATTGTGTACTTTCCTAACAGGAATTTCACTGAGCGCTATTGCAACTAATGGTGCAATG AAGGGTGGGGGGCCATATTACCTCATTGGTCGTGCCCTTGGTCCAGAGATTGGAGTGAGTATTGGATTATGTTTCTTCCTTGGGAATGCGGTTGCTGGAG CTCTTTATGTACTGGGAGCTGTTGAAACCTTTTTAAAAGCCGTGCCTGCTGCTGGGATGTTCAAAGAGACCATAACAAAAGTTAATGGCACAGACATTCC GCATCCCATACAAAGTCCAAGTTTACATGACCTCCAAATTTATGGAATTGTTGTTACAATCATCCTATGCTTTATTGTGTTCGGTGGAGTGAAGATGATC AATCGAGTTGCACCTGCTTTCCTCATTCCTGTTCTGTTCTCGCTGCTCTGCATATTTATTGGGATATTTTTGACGAAGAAGGATTACCCTGCCGATGGAG TCACAGGCTTGAGTTTGGAAAGTTTTAAAGAAAACTGGAGTTCTGATTATCAATTTACTAATAATGCTGGAATACCTGATCCTGAAGGAAAGGTCTTCTG GAATTTCAATGCATTGGTTGGCCTATTTTTCCCTGCTGTAACGGGAATTATGGCAGGCTCTAATAGATCAGCATCACTTAAAGACACGCAGCGTTCAATT CCCATTGGTACACTGGCTGCAACTCTTACAACTACCGTTCTATATTTAGTTTCTGTGTTATTCTTTGGAGCACTTGCAACTAGAGACAAGCTCTTGACGG ACAGGCTACTTACAGCTACAATTGCCTGGCCTTTCCCTGCCATCATCTACATTGGTATCATTCTTTCAACCTTGGGTGCTGCTCTTCAAAGCTTGACAGG AGCCCCACGCCTGCTTGCAGCCATAGCCAATGATGACATTCTGCCAATTCTTAACTATTTCAAAGTTGCAGATGGACACGAGCCTCACATTGCTACTCTC TTTACTGCATTTCTCTGTGTTGGGTGTGTCGTTATTGGGAATTTAGATCTTGTCACACCAACTGTAACTATGTTTTTACTTTTGTGTTATATGGGCGTGA ACTTGTCTTGCTTCCTCCTGGATCTTCTAGATGCTCCCAGCTGGCGACCACGGTGGAAATTTCACCATTGGAGCCTTTCTCTTCTTGGAGCATTACTATG CATAGTCATCATGTTCTTGATTTCTTGGTCATTCACTGTTGTGTCTCTGGCACTAGCAAGCCTCATTTATTATTATGTCAGCATTAAAGGAAAGGCTGGG GACTGGGGTGATGGCTTCAAGAGTGCATATTTTCAACTAGCTCTCCGCAGTCTTCGATCACTGGGAGCTAACCAAGTGCACCCAAAGAATTGGTATCCAA TCCCCCTTGTATTCTGCCGGCCATGGGGAAAGCTGCCAGAAAATGTTCCTTGCCATCCCAAGCTTGCTGACTTTGCAAACTGCATGAAGAAGAAAGGCCG TGGGATGTCCATATTTGTCTCTATATTAGATGGAGACTACCATGAGCATGCTGAAGATGCTAAGGCAGCTTGTAAGCAACTAAGTACCTACATTGATTAC AAGCGTTGTGAAGGTGTCGCAGAGATAGTTGTAGCCCCCAATATGTCTGAAGGTTTTCGTGGAATTGTCCAGACTATGGGCCTTGGCAACCTGAAGCCCA ACATTGTGGTGATGCGGTATCCTGAAATTTGGCGTCGTGAAAATCTAAAAGAAATACCAGCCACCTTTGTTGGAATAATCAATGACTGCGTTGTTGCAAA CAAAGCAGTTGTTATTGTCAAGGGTCTTGATGAGTGGCCCAACGAGTATCAAATGCAGTATGGAACCATTGACTTGTATTGGATTGTAAGAGATGGTGGT CTAATGCTGCTTCTTTCCCAGCTCCTTCGTACAAAGAAGAGTTTTGAGAATTGTAAGATTCAGGTCTTCTGCATTGCAGAGGAGGATTCGGATGCAGAAG AACTCAAAGCTGATGTGAAGAAGTTTCTATATGATCTTCGGATGCAGGCTGAAGTGATTGTAATATCTATGAAATCCTGGGATGCACAAATAGAGGGTGG ATCTCAACAAGATGAATGGTTGGAATCACTTACAGCTGCTCAGCAGCGCATTGCTGGTTATTTAGCTGAGAAGAGGTCGGTTCAGGGGGATGGGGATAAG CTGATGGCTGATGGGAAACCTGTAGTCGTGAACGAGCAACAGGTAGAGAAGTTTCTTTACACAACCCTGAAGCTAAATTCTACGATATTGAGATACTCAA GAATGGCTGCTGTTGTGCTGGTGAGTCTACCCCCGCCTCCAGTAAACCAACCTGCTTACTTTTACATGGAGTACATGGATCTATTAGTAGAGAATGTGCC AAGGCTTTTGATTGTAAGAGGTTACCGTAGAGATGTTGTAACTCTATTCACATAG
AA sequence Show only first row Show all	>Potri.001G357600.2 pacid=42787543 polypeptide=Potri.001G357600.2.p locus=Potri.001G357600 ID=Potri.001G357600.2.v4.1 annot-version=v4.1 MDNGDIEGGGGLEDEFHTNQSGRKYRPVVAHDPAVLEMSSIPPGSSSSNHQSSLKKIIPGGSTQAKTNTNTGGVNDNSTNGSEREHKLELFGFDSLVNIL GLKSMTGEPVAAPSSPRDGEDGSISFDRDRPRPNDLKLGTMMGVFIPCLQNILGIIYYIRFSWIVGMAGIGESLVLVAFCGLCTFLTGISLSAIATNGAM KGGGPYYLIGRALGPEIGVSIGLCFFLGNAVAGALYVLGAVETFLKAVPAAGMFKETITKVNGTDIPHPIQSPSLHDLQIYGIVVTIILCFIVFGGVKMI NRVAPAFLIPVLFSLLCIFIGIFLTKKDYPADGVTGLSLESFKENWSSDYQFTNNAGIPDPEGKVFWNFNALVGLFFPAVTGIMAGSNRSASLKDTQRSI PIGTLAATLTTTVLYLVSVLFFGALATRDKLLTDRLLTATIAWPFPAIIYIGIILSTLGAALQSLTGAPRLLAAIANDDILPILNYFKVADGHEPHIATL FTAFLCVGCVVIGNLDLVTPTVTMFLLLCYMGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGALLCIVIMFLISWSFTVVSLALASLIYYYVSIKGKAG DWGDGFKSAYFQLALRSLRSLGANQVHPKNWYPIPLVFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYHEHAEDAKAACKQLSTYIDY KRCEGVAEIVVAPNMSEGFRGIVQTMGLGNLKPNIVVMRYPEIWRRENLKEIPATFVGIINDCVVANKAVVIVKGLDEWPNEYQMQYGTIDLYWIVRDGG LMLLLSQLLRTKKSFENCKIQVFCIAEEDSDAEELKADVKKFLYDLRMQAEVIVISMKSWDAQIEGGSQQDEWLESLTAAQQRIAGYLAEKRSVQGDGDK LMADGKPVVVNEQQVEKFLYTTLKLNSTILRYSRMAAVVLVSLPPPPVNQPAYFYMEYMDLLVENVPRLLIVRGYRRDVVTLFT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G30450		HAP5, ATCCC1, C...	HAPLESS 5, cation-chloride co-...		Potri.001G357600 [exp]	0	1
AT1G10290		DRP2A, ADL6	DYNAMIN-RELATED PROTEIN 2A, dy...		Potri.003G001400 [exp]	2.00	0.9373	Pt-DH1.2
AT2G27900			unknown protein		Potri.001G212600 [exp]	3.00	0.9306
AT2G21300			ATP binding microtubule motor ...		Potri.004G162800 [exp]	3.16	0.9194
AT1G30450		HAP5, ATCCC1, C...	HAPLESS 5, cation-chloride co-...		Potri.011G090900 [exp]	4.24	0.9312
AT4G38200			SEC7-like guanine nucleotide e...		Potri.004G208400 [exp]	6.00	0.9103
AT3G50590			Transducin/WD40 repeat-like su...		Potri.005G136300 [exp]	8.24	0.9266
AT3G28430			unknown protein		Potri.006G204600 [exp]	8.36	0.9133
AT1G17280		UBC34	ubiquitin-conjugating enzyme 3...		Potri.003G073100 [exp]	10.67	0.9189
AT2G20300		ALE2	Abnormal Leaf Shape 2, Protein...		Potri.002G254600 [exp]	11.31	0.9066
AT3G52120			SWAP (Suppressor-of-White-APri...		Potri.009G064600 [exp]	11.53	0.9033

Compare expression of checked genes

Potri.001G357600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.