Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50600 637 / 0 GRAS SCL5 scarecrow-like 5 (.1) AT5G48150 626 / 0 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT2G04890 535 / 0 GRAS SCL21 SCARECROW-like 21 (.1) AT4G17230 516 / 1e-179 GRAS SCL13 SCARECROW-like 13 (.1) AT1G21450 417 / 3e-140 GRAS SCL1 SCARECROW-like 1 (.1) AT1G07530 243 / 2e-71 GRAS SCL14, ATGRAS2 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) AT1G66350 231 / 2e-69 GRAS RGL1 RGA-like 1 (.1) AT5G52510 233 / 8e-69 GRAS SCL8 SCARECROW-like 8 (.1) AT1G14920 228 / 5e-68 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT2G29060 228 / 2e-66 GRAS GRAS family transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G164400 [exp] 746 / 0 AT5G48150 716 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Potri.016G009700 [exp] 575 / 0 AT4G17230 675 / 0.0 SCARECROW-like 13 (.1) Potri.006G016200 [exp] 565 / 0 AT4G17230 641 / 0.0 SCARECROW-like 13 (.1) Potri.001G409500 [exp] 522 / 0 AT5G48150 518 / 3e-180 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Potri.011G131100 [exp] 516 / 4e-179 AT1G50600 505 / 8e-174 scarecrow-like 5 (.1) Potri.005G186500 [exp] 429 / 1e-144 AT1G21450 685 / 0.0 SCARECROW-like 1 (.1) Potri.002G073400 [exp] 426 / 2e-143 AT1G21450 707 / 0.0 SCARECROW-like 1 (.1) Potri.001G326000 [exp] 273 / 2e-83 AT1G66350 296 / 2e-92 RGA-like 1 (.1) Potri.017G125200 [exp] 249 / 4e-75 AT2G01570 701 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016596 [exp] 823 / 0 AT5G48150 624 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10012323 [exp] 650 / 0 AT5G48150 659 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10006369 [exp] 630 / 0 AT5G48150 633 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10000539 [exp] 529 / 0 AT4G17230 617 / 0.0 SCARECROW-like 13 (.1) Lus10017554 [exp] 514 / 9e-179 AT4G17230 612 / 0.0 SCARECROW-like 13 (.1) Lus10035840 [exp] 513 / 9e-178 AT5G48150 498 / 2e-172 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10036623 [exp] 496 / 7e-172 AT5G48150 486 / 9e-169 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10003772 [exp] 472 / 4e-166 AT5G48150 439 / 2e-154 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10029747 [exp] 420 / 2e-141 AT1G21450 682 / 0.0 SCARECROW-like 1 (.1) Lus10042776 [exp] 418 / 1e-140 AT1G21450 682 / 0.0 SCARECROW-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03514 [poplar] [flax] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Potri.001G361700.4 pacid=42789348 polypeptide=Potri.001G361700.4.p locus=Potri.001G361700 ID=Potri.001G361700.4.v4.1 annot-version=v4.1 ATGCAAACATCCCAGAAGAAAACAATTTCAGATGGGTCTCGTAGGTATGGTGACCAACCTATGCAATATCAGGAGTCCTATTGTTGGCCGCCCATCCAGA ATATTGATGCAGGAAGTCAAGGGACGCACCTTTCAGCTATGACTTCTGATCAATACTGTACCCTAGAATCATCCTCTGAAACTAGTGCTTACCCAGTTCA CAATTCTCCATCCACAGCTAGTTTCTCGCCAAATGAAAGTGTGGTTTCACAGCCAAATTCTCGGTCATATCCTTCAGATCTGCAGGATTCCTCTGAGAAT GCTTGTGGTTCACCAACAAGTGAGTCTTATGTCACCCACAAGTTAAGAGAACTGGAAACTGCTATGCTGGGGCCTGATTCAGATAATCTTGACATGTACA GCATGACTGCAATGCCTGGACCCAACCAGATTGTATCTGAGGCAGAGAAATGGAAGTTTTTGGTTGAGATGATGTCCAGAGGAGACTTGAAAGAAGCACT TTGCACTTGTGCTCTAGCCATTGCAAATGGTGATATGTTCACGGTTGAATGGTTAATGTCAGAGTTACGCCAGATGGTGTCAGTTACTGGTGAGCCTATC CAACGTTTGGGAGCTTACATGCTGGAAGGCCTTGTTGCAAGGTTGGCATCATCAGGAAGTTCTATCTACAATGCCCTGAGGTGTAAGGAGCCTGCTGGTG CTGATCTCCTTTCCTACATGCTTTTACTCTATGAAGCCTGCCCATACTTCAAGTTTGGGTATATGTCAGCAAATGGAGCAATTGCTGATGCAATGAAGGA TGAAATTAGTGTCCATATAATTGATTTTCAAATTGCGCAAGGCAGCCAGTGGGTCACCTTAATCCAGGCTCTTGCAGCTCGGCCTGGAGGACCCCCACGT ATTCGGATTACAGGAATTGATGATTCCACATCAGCTTATGCCCGGGGAGGAGGACTTGATATAGTGGGGAAGAGACTGTTGAAGCTCGCTGAGTCATACA AGGTACCATTTGAGTTCCATACTGCTGGAGTTTCTGCTTCTGAAATTCAAATTGAAAATCTTGGAATTCAACCCGGGGAAGCTGTGGCAGTTAATTTTGC ATTAACGCTCCACCACTTGCCAGATGAAAGTGTGGGCACTCAAAATCATCGGGACAGGTTATTGAGGTTGGTTAAATCCTTGTCTCCCAAGGTGGTAACT CTTGTTGAACACGAATCTAATACTAATACAGTCCCTTTCTTTGCCCGTTTTGTTGAGACACTAAACTATTATCTAGCTATCTTTGAATCAATTGATGTTA CATTACCAAGAGAAAACAAGAAACGAATCAGTGTTGAACAGCACTGTCTTGCTCGGGAGGTTGTTAATATTGTAGCATGTGAGGGTGCTGAGAGAGTTGA ACGCCATGAACCTCTTGGCAAGTGGAGATCTCGGTTTGAGATGGCTGGATTTACACCTTATCCACTAAGCTCTTTTGTCAATTCTACTATCAAGATTCTG CTGGAGAACTACTCTGAAAAGTATACTCTTGAAGAGAGAGATGGAGCTCTCTTTCTTGGCTGGATGAACCGACCTTTGGTTGCCTCTTGTGCATGGAGAT GA
AA sequence Show only first row Show all	>Potri.001G361700.4 pacid=42789348 polypeptide=Potri.001G361700.4.p locus=Potri.001G361700 ID=Potri.001G361700.4.v4.1 annot-version=v4.1 MQTSQKKTISDGSRRYGDQPMQYQESYCWPPIQNIDAGSQGTHLSAMTSDQYCTLESSSETSAYPVHNSPSTASFSPNESVVSQPNSRSYPSDLQDSSEN ACGSPTSESYVTHKLRELETAMLGPDSDNLDMYSMTAMPGPNQIVSEAEKWKFLVEMMSRGDLKEALCTCALAIANGDMFTVEWLMSELRQMVSVTGEPI QRLGAYMLEGLVARLASSGSSIYNALRCKEPAGADLLSYMLLLYEACPYFKFGYMSANGAIADAMKDEISVHIIDFQIAQGSQWVTLIQALAARPGGPPR IRITGIDDSTSAYARGGGLDIVGKRLLKLAESYKVPFEFHTAGVSASEIQIENLGIQPGEAVAVNFALTLHHLPDESVGTQNHRDRLLRLVKSLSPKVVT LVEHESNTNTVPFFARFVETLNYYLAIFESIDVTLPRENKKRISVEQHCLAREVVNIVACEGAERVERHEPLGKWRSRFEMAGFTPYPLSSFVNSTIKIL LENYSEKYTLEERDGALFLGWMNRPLVASCAWR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G50600	GRAS	SCL5	scarecrow-like 5 (.1)		Potri.001G361700 [exp]	0	1
AT1G28480		roxy19, GRX480	Thioredoxin superfamily protei...		Potri.007G134800 [exp]	1.00	0.8730	PtrGrx2
AT5G23130			Peptidoglycan-binding LysM dom...		Potri.007G071500 [exp]	1.41	0.8225
AT2G30230			unknown protein		Potri.019G123900 [exp]	4.47	0.7635
AT5G04550			Protein of unknown function (D...		Potri.010G233700 [exp]	11.22	0.7452
AT4G10270			Wound-responsive family protei...		Potri.019G117402 [exp]	19.59	0.7412
AT5G54310		NEV, AGD5	NEVERSHED, ARF-GAP domain 5 (....		Potri.011G127000 [exp]	21.67	0.6269
AT2G36460			Aldolase superfamily protein (...		Potri.006G165700 [exp]	24.97	0.7296
AT3G29060			EXS (ERD1/XPR1/SYG1) family pr...		Potri.017G086800 [exp]	27.12	0.6757
AT5G13420			Aldolase-type TIM barrel famil...		Potri.003G161900 [exp]	27.60	0.7659
AT1G78280			transferases, transferring gly...		Potri.002G099400 [exp]	30.39	0.7073

Compare expression of checked genes

Potri.001G361700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.