Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55950 540 / 0 Nucleotide/sugar transporter family protein (.1) AT5G57100 421 / 8e-147 Nucleotide/sugar transporter family protein (.1) AT2G30460 104 / 4e-25 Nucleotide/sugar transporter family protein (.1.2) AT5G42420 103 / 1e-24 Nucleotide-sugar transporter family protein (.1.2) AT1G06890 102 / 2e-24 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) AT1G21070 98 / 1e-22 Nucleotide-sugar transporter family protein (.1) AT2G28315 96 / 4e-22 Nucleotide/sugar transporter family protein (.1) AT1G76670 95 / 1e-21 Nucleotide-sugar transporter family protein (.1) AT4G09810 82 / 4e-17 Nucleotide-sugar transporter family protein (.1) AT1G34020 79 / 5e-16 Nucleotide-sugar transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G072500 [exp] 423 / 1e-147 AT5G57100 499 / 2e-177 Nucleotide/sugar transporter family protein (.1) Potri.018G139500 [exp] 416 / 9e-145 AT5G57100 504 / 1e-179 Nucleotide/sugar transporter family protein (.1) Potri.004G211900 [exp] 113 / 3e-28 AT2G28315 530 / 0.0 Nucleotide/sugar transporter family protein (.1) Potri.009G011100 [exp] 107 / 7e-26 AT2G28315 529 / 0.0 Nucleotide/sugar transporter family protein (.1) Potri.013G154800 [exp] 102 / 2e-24 AT1G06890 512 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) Potri.005G260300 [exp] 100 / 3e-23 AT1G21070 510 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.019G128900 [exp] 99 / 3e-23 AT1G06890 550 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) Potri.002G000500 [exp] 97 / 2e-22 AT1G76670 528 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.002G064700 [exp] 85 / 2e-18 AT4G09810 531 / 0.0 Nucleotide-sugar transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016648 [exp] 565 / 0 AT5G55950 603 / 0.0 Nucleotide/sugar transporter family protein (.1) Lus10022563 [exp] 560 / 0 AT5G55950 598 / 0.0 Nucleotide/sugar transporter family protein (.1) Lus10020017 [exp] 415 / 2e-144 AT5G57100 507 / 0.0 Nucleotide/sugar transporter family protein (.1) Lus10015541 [exp] 413 / 1e-138 AT1G62400 623 / 0.0 high leaf temperature 1, Protein kinase superfamily protein (.1) Lus10037397 [exp] 99 / 2e-22 AT2G28315 527 / 0.0 Nucleotide/sugar transporter family protein (.1) Lus10041315 [exp] 96 / 5e-22 AT2G28315 528 / 0.0 Nucleotide/sugar transporter family protein (.1) Lus10021464 [exp] 96 / 7e-22 AT2G28315 527 / 0.0 Nucleotide/sugar transporter family protein (.1) Lus10035824 [exp] 94 / 3e-21 AT1G21070 545 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10036606 [exp] 93 / 7e-21 AT1G21070 547 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10041314 [exp] 91 / 2e-20 AT2G28315 420 / 1e-148 Nucleotide/sugar transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF03151 [poplar] [flax] TPT Triose-phosphate Transporter family
Representative CDS sequence Show only first row Show all	>Potri.001G370800.1 pacid=42788859 polypeptide=Potri.001G370800.1.p locus=Potri.001G370800 ID=Potri.001G370800.1.v4.1 annot-version=v4.1 ATGGGTCTGCTTGATTCATTGCTGGGCAACAATGCGAGGAAGTTCATCAAGAGGAAAGACAGTGATGCAGGAGAAGCAGGTCAAGCATTGGAAGAACTTA GAGGTTCTCTTTACAATGATATTCGGACTTCAGAAGGAGCTAAGCGCCAGCAACAACGGTTTTGTGGACCAGCTGTGGCAATGACCTTCAATTTCATAGC CGCTGTGGGGGTTATCATGGCAAACAAATTAGTGATGAAGAAAGTTGGGTTTAATTTTCCAATCTTCCTCACATTAATCCACTATTCCACTTCATGGATT CTACTTGGCATTCTTAGAGCATTGTCATTGCTTCCAGTTTCCCCTCCCTCTAAAGCTACTCCTTTCGCTCCTCTCTTCTCATTGGGCGTTGTCATGTCCT TTGCATCCGGTCTTGCCAATGCCAGTCTAAACCATAACAGTGTTGGTTTCTATCAGATGGCTAAAATTGCAGTCACTCCTTCCATTGTTCTTGCAGAGTT CATTCTCTTTAGGAAAACAATTTCCTACAAGAAGGTTTTGGCTTTGGTTGTCGTCTCAGGAGGTGTGGCAGTTGCAACAGTGAAAGATTTGGAGTTCAAC TTCTTTGGTGCTTGCATTGCAATTGCATGGATAATTCCAAGCTCAATAAATAAGATTTTGTGGTCTAATCTACAACAACATGCGAACTGGACTGCTCTTG CGTTGATGTGGAAGACAACGCCTGTAACGATTTTTTTCCTAGTAGCCTTGATGCCATGCTTGGATCCACCAGGACTGTTATCATTCAAGTGGGATCTGTA CAGCTCATCTGCTATTTTTCTGACAGCTCTCCTTGGTTTTCTCCTACAATGGTCTGGGGCTTTGGCACTTGGGGCAACTTCTGCAACATCTCATGTTGTT CTCGGACAGTTCAAGTCTTGTGTGATCCTCCTAGGAGGTTTTCTAATTTTTGGTTCAGATCCTGGGTTTGTGAGCATCTGCGGAGCCCTCACAGCTCTCG CCGGAATGTCTGTTTACACATCACTAAACTTGCAGGAGTCACGTGAAAATTTGATTTTCCAGCTTCAGACACAAACGCTGCCTTTATCAAAACCCAAGAC AAAACCTGAAACTACCACCGCAGATGACCAAACTTAG
AA sequence Show only first row Show all	>Potri.001G370800.1 pacid=42788859 polypeptide=Potri.001G370800.1.p locus=Potri.001G370800 ID=Potri.001G370800.1.v4.1 annot-version=v4.1 MGLLDSLLGNNARKFIKRKDSDAGEAGQALEELRGSLYNDIRTSEGAKRQQQRFCGPAVAMTFNFIAAVGVIMANKLVMKKVGFNFPIFLTLIHYSTSWI LLGILRALSLLPVSPPSKATPFAPLFSLGVVMSFASGLANASLNHNSVGFYQMAKIAVTPSIVLAEFILFRKTISYKKVLALVVVSGGVAVATVKDLEFN FFGACIAIAWIIPSSINKILWSNLQQHANWTALALMWKTTPVTIFFLVALMPCLDPPGLLSFKWDLYSSSAIFLTALLGFLLQWSGALALGATSATSHVV LGQFKSCVILLGGFLIFGSDPGFVSICGALTALAGMSVYTSLNLQESRENLIFQLQTQTLPLSKPKTKPETTTADDQT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G55950			Nucleotide/sugar transporter f...		Potri.001G370800 [exp]	0	1
AT5G05570			transducin family protein / WD...		Potri.008G069700 [exp]	1.73	0.9156
AT1G55830			unknown protein		Potri.001G370700 [exp]	2.64	0.9119
AT5G12250		TUB6	beta-6 tubulin (.1)		Potri.016G033200 [exp]	3.16	0.9147
AT1G63120		ATRBL2	RHOMBOID-like 2 (.1)		Potri.001G108700 [exp]	4.47	0.9194
AT1G33230			TMPIT-like protein (.1)		Potri.011G147500 [exp]	4.89	0.9089
AT5G11100		SYT4, NTMCTYPE2...	synaptotagmin 4, Calcium-depen...		Potri.018G025000 [exp]	5.47	0.9021
AT5G37310			Endomembrane protein 70 protei...		Potri.017G144241 [exp]	5.56	0.9195
AT5G12870	MYB	ATMYB46	myb domain protein 46 (.1)		Potri.001G258700 [exp]	8.30	0.8936
AT2G47480			Protein of unknown function (D...		Potri.013G010600 [exp]	9.00	0.8911
AT2G03480		QUL2	QUASIMODO2 LIKE 2 (.1.2)		Potri.008G094800 [exp]	9.79	0.9155

Compare expression of checked genes

Potri.001G370800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.