Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73170 717 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G10420 554 / 0 SPD1 SEEDLING PLASTID DEVELOPMENT 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G33290 345 / 2e-113 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G228600 [exp] 553 / 0 AT3G10420 819 / 0.0 SEEDLING PLASTID DEVELOPMENT 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.011G096702 [exp] 42 / 9e-05 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015985 [exp] 786 / 0 AT1G73170 717 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10012291 [exp] 778 / 0 AT1G73170 712 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10028811 [exp] 558 / 0 AT3G10420 830 / 0.0 SEEDLING PLASTID DEVELOPMENT 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10017471 [exp] 553 / 0 AT3G10420 835 / 0.0 SEEDLING PLASTID DEVELOPMENT 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00004 [poplar] [flax] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Potri.001G375900.1 pacid=42788209 polypeptide=Potri.001G375900.1.p locus=Potri.001G375900 ID=Potri.001G375900.1.v4.1 annot-version=v4.1 ATGCTTTCTTTTTCTCTGCTGCAAATCCCACATCATCTACCTCTACCTCCCTTGACCGAAATCCCACACCATACTTATCCACTCTCCAAAACCCTTCATT TCTCTCCAAAACAACGACTTCCTCGACAATTTCTCTCCAAAAAACTTTGTGGGTTTCTTTCGATTTCGAATTCTTCAGTTTCTCCTTCGCCAGAAGATGG TTTTGAGGTGGAGTTGGGTCGCCTTTTGGCCTTATTACCCCAAGAAATGAGAAAAAGAGTTAGTGAACACCCGGAGCTTCTTGACTTGGTTGAGGTGGTT ATGGATTTGGGTAGGAAGCCACTAGCGAGATTTCCATCTGGGGACTTTGTTCTGTCTGATTGCCCCATCACTCTTCAGGATCTCCAACATGCTACTTCAC AGGTTGGTGACTTTGCTATTGACAATCGAGCAGGCATCAGCCAAACATTGCATCGCATTAGTGCCATAAGAAATCGAGAGGGCCAAATCATTGGTCTTAC TTGTCGTGTTGGTCGGGCAATACCAGGCAGTGCTAGTTTGCTGAGAGATTTAGTTCACGATGGTGCTTCCCTTTTGTTCATTGGTCCTCCAGGGGTGGGA AAGACTACAATTATCAGGGAAATTGCTCGAATGCTTGCAAATGATTACAAGAAACGAGTGATGATTGTTGATACATCCAATGAGATAGGAGGTGATGGTG ATATACCTCATGCTGGAATAGGCAATGCTCGACGGATGCAAGTTCCTGATTTAGATATGCAACATAAGGTATTAATAGAGGCAGTTGAAAATCATATGCC TCAAGTGATTGTGATAGATGAAATTGGGACAAAACTTGAAGCAATGGCTGCAAGTACAATTGCACAGCGTGGGATCCAGCTGGTAGCCACCGCTCATGGA ATCACAATAGAGAATTTGATATTGAATCCTTCTCTGGAGATGCTTGTTGGAGGAATACAGAGTGTGACACTAGGGGATGAAGAAGCAAACAGGAGGGGTG TCCAGAAGACAGTGCTTGAGAGGAAAGGGCCTTCAACATTTAGCTGTGGGGTGGAGATAATTTCAAAGACTGAGTTGCGAGTTCATCGCAGTTTAGAAGC AACAGTGGATGCTATTCTCTCAGGTCGTTCCCCACATGTGGAAGTTTGCAAAATGAGCTCCCAGGGAGTAAAAAAAACTATAGAAAGGGAACCTGCCTTT CAAACATCTGCTGAAAAGAAAGATGAAGTTTTGGTTGAAGATTTCCACTTGACAGATGAAAGGATTGGTCATAATGAGCTTACTTCTGAGTCTCCTCCGG ACATGGGAGACAATTCTTTGGAACATGAAGTACCACTTTGCCTGTATGTCTATGGGATCTTGGAGACAAGTGTGATTCAAGGGATCAATCAGTTGAAAAT GGATGCTGCAGTTCGATTAACTGATAACATCAGCGATGCAGATGCGCTACTTGCCTTGCAGTCTAAGCTCAAGAAAAATGCCAAGATTCAAGCAGCTGCC AAATCTCACGACATACCCATTTATGTGACAAAGACAAGTTCCTTGGAGCAAATAACAAAGGCCATAAGGGCATTGATGAGCAGTCATGCTAATGGATTGA AGGATTCTAGAACAGAAGAGAATACAAAATTGTCAGAGAAGATAGATGCCCTGGAGGAGGCAAGAATAGCTGTGATGCAAGTAGTAATTCCAAAAGGAGA ACCTGTGGAGCTGCTCCCTAGGTCATCACACATTATGTCCCTTCAGATAGATTTCATTCGAAAATACCAATTAGAAACAGAGAGAATTGGTACAGAGCCA GAGGCACGCCTCCGTATCCTCCCATATCAGACTAGGATGGATGTAAACAACAAGTTTATTGAAACAATTGGGACAGATAGTGGAGTTGATGATTTTATCA GTGCCACTGGTGACACAAATGGATCACCCTACAGCACTGACAGGTTACCTCTCTTGCCTGACTAG
AA sequence Show only first row Show all	>Potri.001G375900.1 pacid=42788209 polypeptide=Potri.001G375900.1.p locus=Potri.001G375900 ID=Potri.001G375900.1.v4.1 annot-version=v4.1 MLSFSLLQIPHHLPLPPLTEIPHHTYPLSKTLHFSPKQRLPRQFLSKKLCGFLSISNSSVSPSPEDGFEVELGRLLALLPQEMRKRVSEHPELLDLVEVV MDLGRKPLARFPSGDFVLSDCPITLQDLQHATSQVGDFAIDNRAGISQTLHRISAIRNREGQIIGLTCRVGRAIPGSASLLRDLVHDGASLLFIGPPGVG KTTIIREIARMLANDYKKRVMIVDTSNEIGGDGDIPHAGIGNARRMQVPDLDMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTIAQRGIQLVATAHG ITIENLILNPSLEMLVGGIQSVTLGDEEANRRGVQKTVLERKGPSTFSCGVEIISKTELRVHRSLEATVDAILSGRSPHVEVCKMSSQGVKKTIEREPAF QTSAEKKDEVLVEDFHLTDERIGHNELTSESPPDMGDNSLEHEVPLCLYVYGILETSVIQGINQLKMDAAVRLTDNISDADALLALQSKLKKNAKIQAAA KSHDIPIYVTKTSSLEQITKAIRALMSSHANGLKDSRTEENTKLSEKIDALEEARIAVMQVVIPKGEPVELLPRSSHIMSLQIDFIRKYQLETERIGTEP EARLRILPYQTRMDVNNKFIETIGTDSGVDDFISATGDTNGSPYSTDRLPLLPD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G73170			P-loop containing nucleoside t...		Potri.001G375900 [exp]	0	1
AT1G24040			Acyl-CoA N-acyltransferases (N...		Potri.008G146000 [exp]	2.44	0.8196
AT3G10160		ATDFC, FPGS2	folylpolyglutamate synthetase ...		Potri.016G041800 [exp]	5.09	0.8017
AT1G49350			pfkB-like carbohydrate kinase ...		Potri.004G151600 [exp]	36.33	0.8041
AT5G53350		CLPX	CLP protease regulatory subuni...		Potri.012G015600 [exp]	40.12	0.8134
AT5G24300		SSI1, SSI, ATSS...	STARCH SYNTHASE 1, Glycogen/st...		Potri.015G012400 [exp]	52.49	0.8090
					Potri.016G031166 [exp]	56.66	0.8062
AT3G18290		BTS, EMB2454	embryo defective 2454, BRUTUS,...		Potri.012G055100 [exp]	66.69	0.7182
AT2G29090		CYP707A2	"cytochrome P450, family 707, ...		Potri.001G242600 [exp]	106.70	0.7671
AT2G30600			BTB/POZ domain-containing prot...		Potri.005G251300 [exp]	106.95	0.7716
AT3G61800			unknown protein		Potri.002G171600 [exp]	150.97	0.7474

Compare expression of checked genes

Potri.001G375900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.