Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14470 574 / 0 NB-ARC domain-containing disease resistance protein (.1) AT3G14460 442 / 1e-138 LRR and NB-ARC domains-containing disease resistance protein (.1) AT3G07040 234 / 9e-66 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) AT3G50950 229 / 3e-64 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) AT1G53350 218 / 4e-60 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G48620 207 / 3e-56 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G43470 206 / 4e-56 HRT, RCY1, RPP8 RECOGNITION OF PERONOSPORA PARASITICA 8, RESISTANT TO CMV\(Y\) 1, HYPERSENSITIVE RESPONSE TO TCV, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT5G35450 206 / 8e-56 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G58390 201 / 4e-54 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G59218 197 / 8e-53 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G007001 [exp] 831 / 0 AT3G14470 647 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.003G200800 [exp] 822 / 0 AT3G14460 509 / 7e-157 LRR and NB-ARC domains-containing disease resistance protein (.1) Potri.001G029300 [exp] 783 / 0 AT3G14470 676 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.003G055600 [exp] 762 / 0 AT3G14470 615 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.T126806 [exp] 691 / 0 AT3G14470 587 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.003G200200 [exp] 690 / 0 AT3G14470 634 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.003G201800 [exp] 677 / 0 AT3G14470 615 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.003G201900 [exp] 677 / 0 AT3G14470 567 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.007G137101 [exp] 658 / 0 AT3G14470 616 / 0.0 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039540 [exp] 730 / 0 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10024173 [exp] 707 / 0 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10007261 [exp] 702 / 0 AT3G14460 654 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039509 [exp] 671 / 0 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10005321 [exp] 520 / 2e-168 AT3G14460 607 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10026109 [exp] 495 / 4e-159 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10026132 [exp] 490 / 1e-155 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10002736 [exp] 424 / 2e-142 AT3G14470 317 / 1e-98 NB-ARC domain-containing disease resistance protein (.1) Lus10016316 [exp] 442 / 3e-140 AT3G14470 494 / 6e-156 NB-ARC domain-containing disease resistance protein (.1) Lus10005218 [exp] 323 / 4e-96 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Potri.001G379700.3 pacid=42789978 polypeptide=Potri.001G379700.3.p locus=Potri.001G379700 ID=Potri.001G379700.3.v4.1 annot-version=v4.1 ATGGCTGGGGCATTGGTAGGAGGATCATTTCTCTCAGCTTTCCTCCAGGTTTTGTTCGACAGGATGGCTTCTCGCGAGTTTGTGGATTTCTTCAAGGGAC AAAAGCTCAACGATGAACTGCTGATGAAGTTGAAGATAACAATGAGGTCTATTAATAGGTTGCTGGATGATGCGGAGGAGAAGCAGATTACTAATCGAGA TGTTCAAATGTGGCTTGACGACCTTAAAGATGCTGTCTATGAAGCTGATGACTTGTTGGATGAGATTGCTTATGAAGGTCTGCGATCGGAGATAGAACCT GCTCCTCAAACCAACAACATAGCTATGTGGCGAAACTTTCTCTCTTCTCGTAGTCCATTCAACAAGAGGATCGTGAAGATGAAAGAGAAGTTGAACAAGA TCCTTGGTAGACTTAATGATTTAGTAGAACAAAAGGATGTCCTTGGTTTAGGTGAGAATATTGGAGAAAAACCATCATTACATAAAACGCCAACAACTTC TTTGGTTGATGAATCTGGTGTTTTCGGTAGGAACAATGATCAGAAAGCTATAGTGAAGATGTTATTATCAGATGATGCACATGGCAGAAGCCTTGGTGTG ATTCCTATTGTAGGTATGTGTGGAGTCGGGAAAACCACCCTCAGTCAGCTTGTTTACAATAATAGCAGAGTTCAAGAGTGGTTTGATCTCAAAACATGGG TCTGTGTTTCGGAAGAATTTGGTGTTTGCAAGATAACTAAAGATATCATCAAGGAGTTCGGGTCAAAATATTGTGATACCAAGACTCAGAATCAGCTTCA CCTTGAGCTCAAGGAGAAATTGATGGGAAAAAGGTTCTTGCTTGTCTTAGATGATGTCTGGAATGCAAAGTACGACGATTGGGATATTTTACTCACGCCA TTGAAATTTGGGGCACAAGGAAGTAAGATTATTGTCACAACACAGAATGAAAGGGTAGCATCAGTCCTCTCCACTGTTCCACCTTACCATCTGAAGGGAT TAACCGATGATGATTGCTGGTGTTTGTTCGAAAAACATGCATTTGATGATGGAGATTCTAGTGCACATCCAGGGTTGGAGGGAATTGGCAGAAAAATTGT AAGAAAGTGCAAAGGCCTGCCTTTAGCTGTAAAATCACTTGCAGGTCTCTTAAGGTCCAAAAGAGATGTGGAGGAGTGGGAGAAGATACTACGAAGCAAT TTGTGGGATTTGCAAAACATCAACATTCTTCCAGCTCTAAGATTGAGTTATCATTATCTCCCTGCGCATCTAAAGCGTTGCTTCTCTTATTGCTCAATAT TTCCTAAAGATTATGAATTTAGAAAGGAGGAGATGGTACGTTTATGGATGGCAGAAGGTTTTCTAATCCAACTCAATGGCAATCAGAAAATGAAAGAAGT AGGTGGTGAGTACTTTAATGATCTTGTATCAAGGTCGTTTTTTCAACAATCAAGCAGCCATCCATCTTGCTTCGTGATGCATGACCTCATGAATGGTTTA GCTAAATTTGTAGCTGGAGAATTCTGCTATACGTTAGATGATGCCAATGGATTAAAGCTTGCTAAAAAGACGCGCCATTTATCATATGTTAGAGCAAAGC ATGGAAACCTTAAGAAATTTGAGGGAACCTATGAAACACAATTTTTACGCACTTTCTTACTCGTGGAGCAATCGTGGGAGCTTGATCACAACGAGAGCGA GGCAATGCATGATTTACTGCCAACACTCAAGCGTCTTCGAGTACTATCTCTATCTCAATATTCTTATGTACAAGAGTTACCTGATTCAATTGGCAACTTG AAACACTTGCGATATTTGAATTTATTCCAAGCATCACTGAAAAATTTACCTAGAATTATTCATGCTATGTACAATTTGCAAACCTTAATCTTGCGGGAGT GCAATGACCTTGTCGAGTTACCTGATTCTATTGGCAACTTGAAGCACCTGCAGTACTTGGATCTTTTTGGCACATCGATTAGAAAGTTACCTAATTTTGT GATTGGCTTGTGCCATTTGGAAACTTTAATCTTGTGTCAATGCAAAGACCTCACTGAGCTTCCAACCAACATGGGAAGCTTAATTAACTTGCATCACCTT GATATTAGAGAAACAAATCTGCAGGAGATGCCATTACAGATGGGAAACTTGAAATATCTTCGAATTCTCTAA
AA sequence Show only first row Show all	>Potri.001G379700.3 pacid=42789978 polypeptide=Potri.001G379700.3.p locus=Potri.001G379700 ID=Potri.001G379700.3.v4.1 annot-version=v4.1 MAGALVGGSFLSAFLQVLFDRMASREFVDFFKGQKLNDELLMKLKITMRSINRLLDDAEEKQITNRDVQMWLDDLKDAVYEADDLLDEIAYEGLRSEIEP APQTNNIAMWRNFLSSRSPFNKRIVKMKEKLNKILGRLNDLVEQKDVLGLGENIGEKPSLHKTPTTSLVDESGVFGRNNDQKAIVKMLLSDDAHGRSLGV IPIVGMCGVGKTTLSQLVYNNSRVQEWFDLKTWVCVSEEFGVCKITKDIIKEFGSKYCDTKTQNQLHLELKEKLMGKRFLLVLDDVWNAKYDDWDILLTP LKFGAQGSKIIVTTQNERVASVLSTVPPYHLKGLTDDDCWCLFEKHAFDDGDSSAHPGLEGIGRKIVRKCKGLPLAVKSLAGLLRSKRDVEEWEKILRSN LWDLQNINILPALRLSYHYLPAHLKRCFSYCSIFPKDYEFRKEEMVRLWMAEGFLIQLNGNQKMKEVGGEYFNDLVSRSFFQQSSSHPSCFVMHDLMNGL AKFVAGEFCYTLDDANGLKLAKKTRHLSYVRAKHGNLKKFEGTYETQFLRTFLLVEQSWELDHNESEAMHDLLPTLKRLRVLSLSQYSYVQELPDSIGNL KHLRYLNLFQASLKNLPRIIHAMYNLQTLILRECNDLVELPDSIGNLKHLQYLDLFGTSIRKLPNFVIGLCHLETLILCQCKDLTELPTNMGSLINLHHL DIRETNLQEMPLQMGNLKYLRIL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14470			NB-ARC domain-containing disea...		Potri.001G379700 [exp]	0	1
AT3G62010			unknown protein		Potri.002G184400 [exp]	1.00	0.8968
AT1G69550			disease resistance protein (TI...		Potri.004G088500 [exp]	1.73	0.8878
AT5G53390			O-acyltransferase (WSD1-like) ...		Potri.012G014200 [exp]	2.82	0.8871
AT1G66920			Protein kinase superfamily pro...		Potri.015G018000 [exp]	3.16	0.8821
AT5G48160		OBE2	OBERON2, Protein of unknown fu...		Potri.002G221500 [exp]	3.46	0.8675
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Potri.015G019100 [exp]	6.00	0.8754	CNGC.1
AT3G45880			2-oxoglutarate (2OG) and Fe(II...		Potri.009G025400 [exp]	7.00	0.8742
AT1G04970			lipid-binding serum glycoprote...		Potri.001G358800 [exp]	8.36	0.8691
AT3G26430			GDSL-like Lipase/Acylhydrolase...		Potri.001G074400 [exp]	8.48	0.8705	ENOD8.2
AT5G55600			agenet domain-containing prote...		Potri.006G017400 [exp]	10.00	0.8555

Compare expression of checked genes

Potri.001G379700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.