Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50940 223 / 2e-69 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G50930 221 / 2e-67 BCS1 cytochrome BC1 synthesis (.1) AT5G17760 193 / 3e-57 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G18193 192 / 7e-57 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G17740 186 / 1e-54 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G17730 183 / 5e-54 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28600 183 / 5e-54 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28610 181 / 7e-53 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28580 180 / 2e-52 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G18190 179 / 6e-52 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G020900 [exp] 231 / 6e-72 AT3G50930 561 / 0.0 cytochrome BC1 synthesis (.1) Potri.005G119900 [exp] 223 / 8e-69 AT5G17760 512 / 3e-179 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.007G020800 [exp] 222 / 3e-68 AT5G17760 506 / 1e-176 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.002G032700 [exp] 207 / 3e-63 AT3G50930 437 / 1e-149 cytochrome BC1 synthesis (.1) Potri.007G020500 [exp] 205 / 2e-62 AT2G18193 511 / 1e-179 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.008G177200 [exp] 203 / 2e-61 AT3G50940 401 / 4e-136 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.007G020600 [exp] 201 / 3e-60 AT2G18193 553 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.007G012400 [exp] 195 / 9e-59 AT3G50940 367 / 2e-123 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.011G111200 [exp] 195 / 1e-58 AT3G50940 302 / 2e-98 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024275 [exp] 207 / 1e-62 AT3G50940 434 / 2e-149 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10007391 [exp] 202 / 8e-61 AT3G50940 424 / 2e-145 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015802 [exp] 195 / 2e-58 AT3G50940 462 / 9e-161 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10037004 [exp] 193 / 9e-58 AT3G50930 457 / 9e-159 cytochrome BC1 synthesis (.1) Lus10014284 [exp] 193 / 2e-57 AT3G50930 535 / 0.0 cytochrome BC1 synthesis (.1) Lus10032188 [exp] 188 / 2e-55 AT5G40010 497 / 4e-173 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10014496 [exp] 187 / 4e-55 AT5G40010 577 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10025989 [exp] 175 / 1e-51 AT3G50930 445 / 1e-153 cytochrome BC1 synthesis (.1) Lus10041918 [exp] 175 / 5e-50 AT3G50930 383 / 2e-126 cytochrome BC1 synthesis (.1) Lus10031318 [exp] 167 / 2e-47 AT2G18193 415 / 1e-140 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00004 [poplar] [flax] AAA ATPase family associated with various cellular activities (AAA) CL0023 [poplar] [flax] PF14363 [poplar] [flax] AAA_assoc Domain associated at C-terminal with AAA
Representative CDS sequence Show only first row Show all	>Potri.001G392300.2 pacid=42791657 polypeptide=Potri.001G392300.2.p locus=Potri.001G392300 ID=Potri.001G392300.2.v4.1 annot-version=v4.1 ATGGTGTCTCTCCAGAACTTGCCTAATACAAAAACAGTTCTTTCTGTGGTAGCTTCTCTTGCAGCTTCAGCAGTGCTGATTCCAACAGCTGCCAATCTTC GCATTTTTGCTCATCTTTTCCGTCCTCAATTCACTCTTGTTATAGAAGAATATGGACCGGATTACTTCTGTGATGAGTTGTTTTTGGCTGCTGAGACTTA TCTGGGAACTAAATCGGCTCCATCAATTCGAAGAATAAAGGCATGCAAGAAGGAGAAAGAGAAAAAACCAGCGATTTCCCTGGACAGAGACCAAGAAATT CTTGATGTTTTTGAAAATATTGAAGTAAAGTGGAGGATGGTTATTAGAGAAAACTCTGAGGTTAGAAATTATACCTTAGTAGCACGACTAAGATCCTATG AGCTGGTTTTTCACAAGAAGCACAAAGAGAAGGTCCTGGGTTCTTACCTGCCGTTCATTTTACGGCAGGCGAAGGCCATTCAAGAGGAAAACAAGGTAAG ACAGCTCAACAGTCTTGGAGGTTTATCTTGGTTAACATCAACCATAATAGATCATCCGATGACCTTTGAGACCATTGCAATGGATGAGAGGCTCAAGGAA GAAATAATAGGTGATCTGAACACCTTCGTGAAGTCAAAGGAGTACTACAGAAAAATCGGGAAAGCTCGGAAACGTGGATACCTGATACACGGTCCTCCTG GAACAGGAAAGTCGAGCTTGATCGCCGCCATGGCTAATCACTTGAACTACAGTATCCATGACTTGGATCTACAGGATGATAATTTCCTTACAAGTTACGA TATTAGGTCAGTGTTGCTTCACCATTTAGACAAAACTATACTTGTCATCAAAGATATTGATTCCACTGTCACAGTATCATGCCGAAGGCGGAGATTTGAG CCAAGGAAGGTGGTTGAGGTTCAAAAACAGGCTATGCTCTTAAGGCTACTGCAGTTTATTGATGGACTTTTGGCTGCCTCGCATCAATGA
AA sequence Show only first row Show all	>Potri.001G392300.2 pacid=42791657 polypeptide=Potri.001G392300.2.p locus=Potri.001G392300 ID=Potri.001G392300.2.v4.1 annot-version=v4.1 MVSLQNLPNTKTVLSVVASLAASAVLIPTAANLRIFAHLFRPQFTLVIEEYGPDYFCDELFLAAETYLGTKSAPSIRRIKACKKEKEKKPAISLDRDQEI LDVFENIEVKWRMVIRENSEVRNYTLVARLRSYELVFHKKHKEKVLGSYLPFILRQAKAIQEENKVRQLNSLGGLSWLTSTIIDHPMTFETIAMDERLKE EIIGDLNTFVKSKEYYRKIGKARKRGYLIHGPPGTGKSSLIAAMANHLNYSIHDLDLQDDNFLTSYDIRSVLLHHLDKTILVIKDIDSTVTVSCRRRRFE PRKVVEVQKQAMLLRLLQFIDGLLAASHQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G50940			P-loop containing nucleoside t...		Potri.001G392300 [exp]	0	1
AT1G74875			unknown protein		Potri.013G008800 [exp]	11.57	0.9246
AT3G04120		GAPC1, GAPC-1, ...	glyceraldehyde-3-phosphate deh...		Potri.001G335800 [exp]	15.42	0.9244	GAPDH.2
					Potri.002G099150 [exp]	20.04	0.9242
AT5G47540			Mo25 family protein (.1)		Potri.003G055900 [exp]	22.97	0.9242
					Potri.006G062050 [exp]	34.72	0.9240
AT5G05800			unknown protein		Potri.008G217500 [exp]	38.39	0.9240
					Potri.012G082350 [exp]	44.83	0.9240
AT1G06280	AS2	LBD2	LOB domain-containing protein ...		Potri.013G123900 [exp]	46.30	0.9240
AT2G40730		CTEXP	cytoplasmic tRNA export protei...		Potri.019G059200 [exp]	51.96	0.7153
AT3G19090			RNA-binding protein (.1)		Potri.004G144700 [exp]	53.75	0.8176

Compare expression of checked genes

Potri.001G392300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.