Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14410 497 / 3e-178 Nucleotide/sugar transporter family protein (.1) AT1G53660 474 / 3e-169 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G17430 261 / 7e-85 Nucleotide-sugar transporter family protein (.1) AT1G48230 249 / 2e-80 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G11230 246 / 2e-79 Nucleotide-sugar transporter family protein (.1) AT2G25520 239 / 6e-77 Drug/metabolite transporter superfamily protein (.1) AT5G25400 238 / 2e-76 Nucleotide-sugar transporter family protein (.1) AT4G32390 237 / 5e-76 Nucleotide-sugar transporter family protein (.1) AT1G77610 99 / 2e-23 EamA-like transporter family protein (.1) AT1G21870 97 / 8e-23 GONST5 golgi nucleotide sugar transporter 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G001700 [exp] 267 / 4e-87 AT3G17430 589 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.008G214300 [exp] 264 / 5e-86 AT3G17430 569 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.018G028900 [exp] 244 / 1e-78 AT4G32390 568 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.006G252500 [exp] 238 / 3e-76 AT4G32390 537 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.006G278700 [exp] 100 / 2e-23 AT1G06470 542 / 0.0 Nucleotide/sugar transporter family protein (.1.2) Potri.005G177200 [exp] 92 / 5e-21 AT1G77610 561 / 0.0 EamA-like transporter family protein (.1) Potri.002G084500 [exp] 92 / 8e-21 AT1G77610 580 / 0.0 EamA-like transporter family protein (.1) Potri.003G118000 [exp] 91 / 1e-20 AT1G12500 503 / 4e-180 Nucleotide-sugar transporter family protein (.1) Potri.010G194100 [exp] 88 / 2e-19 AT3G11320 572 / 0.0 Nucleotide-sugar transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016923 [exp] 488 / 1e-174 AT3G14410 496 / 1e-177 Nucleotide/sugar transporter family protein (.1) Lus10018339 [exp] 270 / 3e-88 AT3G17430 615 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10017115 [exp] 257 / 3e-83 AT3G17430 593 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10002904 [exp] 249 / 2e-80 AT4G32390 632 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10002023 [exp] 248 / 3e-80 AT4G32390 631 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10042700 [exp] 96 / 4e-22 AT1G77610 602 / 0.0 EamA-like transporter family protein (.1) Lus10025645 [exp] 95 / 8e-22 AT1G21870 563 / 0.0 golgi nucleotide sugar transporter 5 (.1) Lus10010954 [exp] 94 / 4e-21 AT1G06470 554 / 0.0 Nucleotide/sugar transporter family protein (.1.2) Lus10009878 [exp] 90 / 4e-20 AT3G11320 548 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10029663 [exp] 91 / 7e-20 AT1G77610 547 / 0.0 EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF03151 [poplar] [flax] TPT Triose-phosphate Transporter family
Representative CDS sequence Show only first row Show all	>Potri.001G394500.1 pacid=42791574 polypeptide=Potri.001G394500.1.p locus=Potri.001G394500 ID=Potri.001G394500.1.v4.1 annot-version=v4.1 ATGGCGGATCGGAGTCGAAGTTTCCTGAAAGAAGGAACAGTAACGTATGCTTATATTCTCCTTTACATTGCTCTCTCCAGTGGCCAGATCTTCTTTAACA AGTGGGTTTTGTCATCTAAGGAAATAAACTTTCCTTATCCTCTTGGACTGACTCTGCTTCACATGGTTTTCTCCTCTGTTTTGTGTTTTGTACTAACCAA GGTTTTCAAGGTTATGAGGGTTGAGGAAGGAATGACACTGGAAATATATACAACTTCAGTTATTCCAATTGGTGCAACGTTTGCAATGACTCTGTGGCTG GGAAACACAGCATACCTCTACATATCTGTGGCTTTTGCACAAATGTTGAAGGCTATCATGCCAGTAGCTGTTTTCGTTCTTGGTGTAGCAGCTGGACTTG AAATGATGAGCTGCAGAATGCTTTTCATAATGTCAGTGATAAGCTTTGGTGTTCTAGTGGCTTCTTATGGAGAAATAAATATCAACTGGATTGGAGTTGT GTACCAGATGGGTGGAGTTGTTGGAGAGGCCTTGAGACTTATTTTTATGGAGATTCTGGTGAAGAGGAAGGGTCTGAAATTAAACCCTATATCTGTCATG TACTATGTCAGTCCCTGCAGTTCTGTTTTCCTGTTAATTCCTTGGATCTTTCTGGAGAAATCAAGGATGGAAGCACATGGGACATGGAACCTTCAACCAC TAGTGTTAATGCTCAACTCTCTTTGCACCTTCGCTCTCAATCTATCAGTTTTCCTTGTGATCTCACATACGAGTGCTCTGACCATTCGTGTGGCTGGAGT CGTCAAGGATTGGGTGGTTGTCTTGCTGTCTGCCCTTCTATTTGCAGATACGAAGCTAACAATTATAAACCTGTTTGGCTATGCTATTGCTATTGCTGGT GTAGCAGCATATAATAATCACAAATTGAAGAAGGAAGCTTCTAAAGGCAGTTCTGATGAATCGAAACATCCTGAATCCATACCTTTGACTGAACCATCAA CTTCCAACAGTTAA
AA sequence Show only first row Show all	>Potri.001G394500.1 pacid=42791574 polypeptide=Potri.001G394500.1.p locus=Potri.001G394500 ID=Potri.001G394500.1.v4.1 annot-version=v4.1 MADRSRSFLKEGTVTYAYILLYIALSSGQIFFNKWVLSSKEINFPYPLGLTLLHMVFSSVLCFVLTKVFKVMRVEEGMTLEIYTTSVIPIGATFAMTLWL GNTAYLYISVAFAQMLKAIMPVAVFVLGVAAGLEMMSCRMLFIMSVISFGVLVASYGEININWIGVVYQMGGVVGEALRLIFMEILVKRKGLKLNPISVM YYVSPCSSVFLLIPWIFLEKSRMEAHGTWNLQPLVLMLNSLCTFALNLSVFLVISHTSALTIRVAGVVKDWVVVLLSALLFADTKLTIINLFGYAIAIAG VAAYNNHKLKKEASKGSSDESKHPESIPLTEPSTSNS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14410			Nucleotide/sugar transporter f...		Potri.001G394500 [exp]	0	1
AT1G71990		ATFT4, ATFUT13,...	ARABIDOPSIS FUCOSYLTRANSFERASE...		Potri.013G111200 [exp]	9.79	0.7962	Pt-FUT1.2
AT4G38280			unknown protein		Potri.004G205200 [exp]	11.22	0.8437
AT1G69420			DHHC-type zinc finger family p...		Potri.008G091700 [exp]	12.80	0.8586
AT5G03220			Mediator complex, subunit Med7...		Potri.016G062800 [exp]	14.14	0.8324
AT5G55230		ATMAP65-1	microtubule-associated protein...		Potri.011G092500 [exp]	15.81	0.8558
AT5G50350			unknown protein		Potri.010G247100 [exp]	17.88	0.8500
AT5G44560		VPS2.2	SNF7 family protein (.1.2)		Potri.011G154700 [exp]	18.89	0.8518
AT1G10180			unknown protein		Potri.015G119300 [exp]	22.97	0.8427
AT3G13560			O-Glycosyl hydrolases family 1...		Potri.003G218500 [exp]	24.24	0.8470
AT4G30220		RUXF	small nuclear ribonucleoprotei...		Potri.018G092200 [exp]	26.26	0.8419

Compare expression of checked genes

Potri.001G394500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.