Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27220 323 / 7e-95 NB-ARC domain-containing disease resistance protein (.1) AT4G27190 317 / 2e-92 NB-ARC domain-containing disease resistance protein (.1) AT1G12210 285 / 2e-81 RFL1 RPS5-like 1 (.1) AT1G12280 284 / 3e-81 LRR and NB-ARC domains-containing disease resistance protein (.1) AT4G10780 281 / 2e-80 LRR and NB-ARC domains-containing disease resistance protein (.1) AT4G26090 281 / 3e-80 RPS2 RESISTANT TO P. SYRINGAE 2, NB-ARC domain-containing disease resistance protein (.1) AT5G63020 276 / 1e-78 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G61310 271 / 2e-76 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G61180 270 / 2e-76 LRR and NB-ARC domains-containing disease resistance protein (.1.2) AT1G12220 267 / 3e-75 RPS5 RESISTANT TO P. SYRINGAE 5, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G405100 [exp] 1939 / 0 AT4G27220 311 / 1e-90 NB-ARC domain-containing disease resistance protein (.1) Potri.011G124000 [exp] 1489 / 0 AT4G27220 312 / 8e-92 NB-ARC domain-containing disease resistance protein (.1) Potri.011G124100 [exp] 927 / 0 AT4G27220 279 / 6e-80 NB-ARC domain-containing disease resistance protein (.1) Potri.011G127200 [exp] 874 / 0 AT4G27220 290 / 2e-83 NB-ARC domain-containing disease resistance protein (.1) Potri.018G145566 [exp] 840 / 0 AT4G27220 348 / 7e-105 NB-ARC domain-containing disease resistance protein (.1) Potri.T045200 [exp] 801 / 0 AT4G27220 348 / 1e-104 NB-ARC domain-containing disease resistance protein (.1) Potri.T045000 [exp] 791 / 0 AT4G27220 322 / 1e-94 NB-ARC domain-containing disease resistance protein (.1) Potri.018G136301 [exp] 781 / 0 AT4G27220 329 / 8e-97 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014336 [exp] 780 / 0 AT4G27220 320 / 2e-92 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039509 [exp] 170 / 1e-42 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10024173 [exp] 160 / 2e-39 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039540 [exp] 154 / 8e-38 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10026132 [exp] 145 / 6e-35 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10022792 [exp] 139 / 3e-33 AT3G14470 343 / 7e-102 NB-ARC domain-containing disease resistance protein (.1) Lus10014922 [exp] 135 / 4e-32 AT3G07040 523 / 1e-171 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10026109 [exp] 136 / 5e-32 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10018937 [exp] 134 / 8e-32 AT3G07040 587 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10028639 [exp] 130 / 1e-30 AT3G07040 579 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10005218 [exp] 130 / 2e-30 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain CL0361 [poplar] [flax] C2H2-zf PF02892 [poplar] [flax] zf-BED BED zinc finger CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.001G404800.4 pacid=42792239 polypeptide=Potri.001G404800.4.p locus=Potri.001G404800 ID=Potri.001G404800.4.v4.1 annot-version=v4.1 ATGGACCAAGAGCGCCCACAAAAGAAGAGGGTTAAACATACCGATCCATTTTGGGATCATGTTGAGAAGACAAGTGATGGTGGTCCTTTCAAGTGCAAAT TTTGCAAATCTTCATTTGCTGCGTCTACTTCAATCTCAAGGTTCAAATATCATTTGTCAGGAGAAAGTGGGAAAGGAGTTGGTATTTGTGGAAGAGTACC CGTTGATGTTAAAGCAGCAGCCTACCAAGCAATGCACAAAAAACAAAATGCCATCCCACCAATTGATCATCCAGTTCCAAATGTAGAAGCTCGAAGAATG GAGCAAGAAGGGAGGGATCTCCCAGATATGGCAATGGAAGATTGGACAGAGAGTACGAGATGGGAAGAGTTTATTGAAGAGTTGATGGTTATTAACGAAG CTGGTGGTTCTCAAGGGCAAGGAGTTTATGAAGGCATGCTAGATACAGAGAATTTGACACACAGCAGAACCGTGGAAGGGATTGAACTTATTGACCAAGT TAGAGTTTATGAAGAGCAAGGGGCAGATGTTTCAGATGGTGGAGTGGAGAATTTGACAGACAACTTCACCGGTAGTGTGTCCATAGTTACTGACGAAAGT AGAGTTTCTGAAGGGCTTCATGCACATAAGGCTAAAGGAGAAGCATTACTGACAACAAAGCTGGTAGGTCAGGCTTCTGACAGAAATAAGGAGATGATCT GGTCTTGGTTAATGAAGGATGACGTCTTAAGTGTTGGCATTTATGGGATGGGCGGTGTCGGAAAAACATCACTGGTGACGCATATCCATAATCAGCTGCT ACAAAGACCAAGTTCTTTCAATTATGTGTTTTGGGTTACTGTATCACAAAATTTCACCATCAGTAAATTGCAGTATCTTATTGCCAAAGCTATTAATTTA GACCTTTCAAATGAAGAGGATGAGAAGAAAAGAGCTGCAAAGTTGTCTAAAGCATTAGTTGCCAAGGGAAAATCTGTTCTCATTCTAGATGATTTATGGA ATCATTTTCTGCTAGAAATGGTGGGCATACCTGTTGAAGTTAACGCGTGCAAGTTGATTCTCACAAGTCGATCGTTAGAAGTTTGTCGGCGGATGGGTTG CCAAAAGAGCATCAAAGTAGAGCTTCTTACTAAAGAAGAAGCTTGGACTTTGTTCGTGGAGAAACTTGGGCAGCGCCATTATGCTGATCTTTCTCCTGAA GTCGCAGACATAGCAAAATCTGTTGCAGCAGAATGCGCTTGTCTACCACTTGGGATTATAGCAATGGCAGGAAGCATGAGGGAAGTGAATGACTTGTATG AATGGAGGAATGCATTGACAGAATTGAAACAATCAGAAGTTGGGGTAGAAGACATGGAACCTGAGGTATTCCATATTTTGAGATTTAGTTATATGCACTT GAATGACTCAGCATTGCAACAGTGTCTCTTATACTGTGCATTTTTTCCAGAGGATTTCACCGTAGATAGAGAGGACTTGATAGGTTATTTGATCGATGAG GGAATAATTCAACCAATGAAGAGCAGGCAGGCAGAATATGATAGAGGTCAGGCTATGCTTAACAAGCTTGAAAATGCTTGCTTACTGGAAAGTTATATAA GCAAAGAAGACTACAGATGTTTCAAGATGCATGACTTGATTCGAGATATGGCTCTTCAGAAACTGAGGGAGAAATCACCAATCATGGTTGAAGTTGAGGA GCAACTAAAAGAATTACCAGATGAGGATGAGTGGAAAGTGGATGTCATGAGAGTTTCGTTAATGAAAAATCACCTCAAGGAAATTCCCTCTGGCTGTTCA CCAATGTGTCCCAAGCTTTCAACGTTGTTTTTATTCTCGAATTTCAAGCTAGAAATGATTGCGGATTCCTTTTTCAAACATTTGCAAGGGCTCAAGGTTC TTGATCTATCAGCCACCGCTATCCGGGAATTGCCAAGTTCCTTCTCCGATTTGGTGAATCTCACTGCTTTATATCTCAGAAGGTGTCACAATCTAAGATA TATACCATCATTAGCAAAGCTTAGGGGGTTGAGGAAATTGGATCTCCGCTATACTGCACTTGAAGAACTGCCTCAAGGGATGGAAATGCTGTCCAATCTC AGGTATCTTAATCTTTTTGGAAATAGTCTTAAGGAGATGCCTGCTGGTATATTACCTAAGCTCTCACAGCTACAATTCCTTAACGCGAACCGGGCGTCCG GCATTTTCAAGACAGTACGAGTAGAGGAAGTAGCATGCTTGAATAGGATGGAAACTTTGAGATACCAATTCTGTGATCTTGTTGACTTCAAGAAGTACCT CAAATCTCCAGAAGTGAGGCAATATCTGACCACATACTTCTTCACAATAGGACAACTAGGTGTGGATCGAGAAATGGATTCTTTACTTTATATGACACCA GAGGAAGTCTTTTATAAAGAAGTTTTGGTTCATGATTGCCAAATCGGTGAAAAAGGAAGGTTTCTTGAGCTCCCAGAAGATGTTTCATCTTTCTCAATCG GAAGATGTCACGACGCAAGGAGCTTATGCGATGTTTCTCCATTTAAACATGCAACTTCACTGAAGTCCTTGGGGATGTGGGAATGTGATGGGATAGAGTG CTTGGCTTCGATGTCAGAATCCTCCACGGATATATTTGAAAGCCTCGAATCGCTATACCTTAAAACTTTGAAGAACTTTTGTGTCTTCATTACAAGAGAA GGAGCTGCTCCACCATCATGGCAATCTAATGGTACCTTCTCTCATCTTAAAAAAGTGACAATAGGTGAATGTCCAAGTATGAAAAATCTGTTCTCCCTTG ACTTGTTGCCAAATCTCACAAACTTGGAAGTGATTGAAGTTGATGACTGTGACCAAATGGAGGAGATAATAGCAATTGAGGATGAAGAAGAAGGCATGAT GGTTGAAGATAGCAGCAGCAGCAGCCACTACGCTGTTACCAGTCTCCCAAATTTGAAGGTTTTGAAATTAAGCAACTTACCGGAGCTAAAAAGCATTTTC CACGGGGAAGTGATTTGTGATTCTCTACAAGAAATTATTGTGGTTAACTGCCCAAATCTGAAGAGGATATCACTCTCTCATCGCAACCATGCTAATGGCC AAACACCACTTCGAAAAATCCAGGCATATCCAAAAGAATGGTGGGAATCAGTGGAGTGGGGCAATTCCAACAGTAAGAATGCCCTTGAACCCCTGTGTGT GTTTTGGGAGTCTTTATTTTAG
AA sequence Show only first row Show all	>Potri.001G404800.4 pacid=42792239 polypeptide=Potri.001G404800.4.p locus=Potri.001G404800 ID=Potri.001G404800.4.v4.1 annot-version=v4.1 MDQERPQKKRVKHTDPFWDHVEKTSDGGPFKCKFCKSSFAASTSISRFKYHLSGESGKGVGICGRVPVDVKAAAYQAMHKKQNAIPPIDHPVPNVEARRM EQEGRDLPDMAMEDWTESTRWEEFIEELMVINEAGGSQGQGVYEGMLDTENLTHSRTVEGIELIDQVRVYEEQGADVSDGGVENLTDNFTGSVSIVTDES RVSEGLHAHKAKGEALLTTKLVGQASDRNKEMIWSWLMKDDVLSVGIYGMGGVGKTSLVTHIHNQLLQRPSSFNYVFWVTVSQNFTISKLQYLIAKAINL DLSNEEDEKKRAAKLSKALVAKGKSVLILDDLWNHFLLEMVGIPVEVNACKLILTSRSLEVCRRMGCQKSIKVELLTKEEAWTLFVEKLGQRHYADLSPE VADIAKSVAAECACLPLGIIAMAGSMREVNDLYEWRNALTELKQSEVGVEDMEPEVFHILRFSYMHLNDSALQQCLLYCAFFPEDFTVDREDLIGYLIDE GIIQPMKSRQAEYDRGQAMLNKLENACLLESYISKEDYRCFKMHDLIRDMALQKLREKSPIMVEVEEQLKELPDEDEWKVDVMRVSLMKNHLKEIPSGCS PMCPKLSTLFLFSNFKLEMIADSFFKHLQGLKVLDLSATAIRELPSSFSDLVNLTALYLRRCHNLRYIPSLAKLRGLRKLDLRYTALEELPQGMEMLSNL RYLNLFGNSLKEMPAGILPKLSQLQFLNANRASGIFKTVRVEEVACLNRMETLRYQFCDLVDFKKYLKSPEVRQYLTTYFFTIGQLGVDREMDSLLYMTP EEVFYKEVLVHDCQIGEKGRFLELPEDVSSFSIGRCHDARSLCDVSPFKHATSLKSLGMWECDGIECLASMSESSTDIFESLESLYLKTLKNFCVFITRE GAAPPSWQSNGTFSHLKKVTIGECPSMKNLFSLDLLPNLTNLEVIEVDDCDQMEEIIAIEDEEEGMMVEDSSSSSHYAVTSLPNLKVLKLSNLPELKSIF HGEVICDSLQEIIVVNCPNLKRISLSHRNHANGQTPLRKIQAYPKEWWESVEWGNSNSKNALEPLCVFWESLF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27220			NB-ARC domain-containing disea...		Potri.001G404800 [exp]	0	1
AT2G17820		AHK1, ATHK1	histidine kinase 1 (.1)		Potri.007G056400 [exp]	2.44	0.8125	Pt-ATHK1.2
AT4G17970		ATALMT12, ALMT1...	"aluminum-activated, malate tr...		Potri.005G208500 [exp]	6.92	0.7933
AT1G76520			Auxin efflux carrier family pr...		Potri.011G145700 [exp]	7.74	0.7808
					Potri.003G105450 [exp]	7.93	0.7743
					Potri.018G031850 [exp]	10.95	0.7872
AT3G25597			unknown protein		Potri.008G111500 [exp]	14.28	0.7767
AT3G22740		HMT3	homocysteine S-methyltransfera...		Potri.008G155900 [exp]	17.43	0.7839	HMT3.1
AT1G33440			Major facilitator superfamily ...		Potri.019G067500 [exp]	18.97	0.7462
AT3G10910			RING/U-box superfamily protein...		Potri.019G057700 [exp]	20.71	0.7538
AT5G14940			Major facilitator superfamily ...		Potri.017G152800 [exp]	21.35	0.7421

Compare expression of checked genes

Potri.001G404800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.