Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27220 166 / 4e-45 NB-ARC domain-containing disease resistance protein (.1) AT4G27190 145 / 6e-38 NB-ARC domain-containing disease resistance protein (.1) AT5G63020 141 / 1e-36 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G12210 139 / 1e-35 RFL1 RPS5-like 1 (.1) AT1G12280 138 / 2e-35 LRR and NB-ARC domains-containing disease resistance protein (.1) AT4G10780 138 / 2e-35 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G12220 133 / 1e-33 RPS5 RESISTANT TO P. SYRINGAE 5, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT4G26090 129 / 3e-32 RPS2 RESISTANT TO P. SYRINGAE 2, NB-ARC domain-containing disease resistance protein (.1) AT1G61310 128 / 6e-32 LRR and NB-ARC domains-containing disease resistance protein (.1) AT5G43730 127 / 1e-31 Disease resistance protein (CC-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G404800 [exp] 741 / 0 AT4G27220 323 / 5e-95 NB-ARC domain-containing disease resistance protein (.1) Potri.001G405100 [exp] 707 / 0 AT4G27220 311 / 1e-90 NB-ARC domain-containing disease resistance protein (.1) Potri.011G124000 [exp] 641 / 0 AT4G27220 312 / 8e-92 NB-ARC domain-containing disease resistance protein (.1) Potri.018G145566 [exp] 378 / 1e-122 AT4G27220 348 / 7e-105 NB-ARC domain-containing disease resistance protein (.1) Potri.011G124100 [exp] 374 / 3e-121 AT4G27220 279 / 6e-80 NB-ARC domain-containing disease resistance protein (.1) Potri.018G145564 [exp] 358 / 2e-120 AT4G27220 236 / 1e-68 NB-ARC domain-containing disease resistance protein (.1) Potri.011G127200 [exp] 372 / 5e-120 AT4G27220 290 / 2e-83 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014380 [exp] 362 / 4e-115 AT4G27220 302 / 5e-87 NB-ARC domain-containing disease resistance protein (.1) Potri.018G136500 [exp] 354 / 5e-113 AT4G27220 358 / 8e-108 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039509 [exp] 90 / 6e-19 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10024173 [exp] 87 / 4e-18 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10007261 [exp] 79 / 2e-15 AT3G14460 654 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039540 [exp] 78 / 3e-15 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10022792 [exp] 77 / 7e-15 AT3G14470 343 / 7e-102 NB-ARC domain-containing disease resistance protein (.1) Lus10014922 [exp] 75 / 4e-14 AT3G07040 523 / 1e-171 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10026132 [exp] 74 / 1e-13 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10016316 [exp] 73 / 2e-13 AT3G14470 494 / 6e-156 NB-ARC domain-containing disease resistance protein (.1) Lus10038983 [exp] 70 / 1e-12 AT3G07040 468 / 5e-150 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10004126 [exp] 67 / 1e-11 AT3G14470 353 / 6e-106 NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.001G404875.1 pacid=42788800 polypeptide=Potri.001G404875.1.p locus=Potri.001G404875 ID=Potri.001G404875.1.v4.1 annot-version=v4.1 ATGGAACCTAAGGTATTCCATATTTTGAGATTTAGTAACGTGCACTTGAATGACTCAGCATTGCAACAGTGTCTCTTATACTGTGCATTTTTTCCAGAGG ATTTCACCGTAGATAGAGAGGACTTGATAGGTTATTTGATCGATGAGGGAATAATTCAACCAATGAAGAGCAGGCAGGCAGAATATGATAGAGGTCAGGC TATGCTTAACAAGCTTGAAAATGCTTGCTTACTGGAAAGTTATATAAGCAAAGAAGACTACAGATGTTTCAAGATGCATGACTTGATTCGAGATATGGCT CTTCAGAAACTGAGGGAGAAATCACCAATCATGGTTGAAGCTGAGGAGCAACTAAAAGAATTACCAGATGAGAGCGAGTGGAAAGTGGATGTCATGAGAG TTTCGTTAATGAAAAATCACCTCAAGGAAATTCCCTCTGGCTGTTCACCAATGTGTCCCAAGCTTTCAACGTTGTTTTTATTCTCAAATTTCAAACTTGA AATGATTGCGGATTCCTTTTTCAAACATTTGCAAGGGCTCAAGGTTCTTGATCTATCATCCACCGCTATCCGGGAATTGCCAAGTTCCTTCTCCGATTTG GTGAATCTCACTGCTTTATATCTCAGAAGGTGTCACAATCTAAGATATATACCATCATTAGCAAAGCTTAGGGAGTTGAGGAAATTGGATCTCCGCTATA CTGCACTTGAAGAACTGCCTCAAGGGATGGAAATGCTGTCCAATCTCAGGTATCTTAATCTTTTTGGAAATAGTCTTAAGGAGATGCCTGCTGGTATATT ACCTAAGCTCTCACAGCTACAATTCCTTAACGTGAACCGGGCGTCCGGCATTTTCAAGACAGTACGAGTAGAGGAAGTAGCATGCTTGAAGAGGATGGAA ACTTTGAGATACCAATTCTGTGATCTTGTTGACTTCAAGAAGTACCTCAAATCTCCAGAAGTGAGGCAACCTCTGACCACATACTTCTTCACAATAGGAC AACTAGGTGTGGATCCAGTTATGGATTCTTTACTTTATATGACACCAGAGGAAGTCTTTTATAAAGAAGTTTTGGTTCATGATTGCCAAATCGGTGAAAA TGGAAGGTTTCTTGAGCTCCCTCCCAGAAGATGTTTCATCTTTCTCAATCGGAAGATGTCACGACGTAAGGAGCTTATGCGATGTTTCTCCATTTAA
AA sequence Show only first row Show all	>Potri.001G404875.1 pacid=42788800 polypeptide=Potri.001G404875.1.p locus=Potri.001G404875 ID=Potri.001G404875.1.v4.1 annot-version=v4.1 MEPKVFHILRFSNVHLNDSALQQCLLYCAFFPEDFTVDREDLIGYLIDEGIIQPMKSRQAEYDRGQAMLNKLENACLLESYISKEDYRCFKMHDLIRDMA LQKLREKSPIMVEAEEQLKELPDESEWKVDVMRVSLMKNHLKEIPSGCSPMCPKLSTLFLFSNFKLEMIADSFFKHLQGLKVLDLSSTAIRELPSSFSDL VNLTALYLRRCHNLRYIPSLAKLRELRKLDLRYTALEELPQGMEMLSNLRYLNLFGNSLKEMPAGILPKLSQLQFLNVNRASGIFKTVRVEEVACLKRME TLRYQFCDLVDFKKYLKSPEVRQPLTTYFFTIGQLGVDPVMDSLLYMTPEEVFYKEVLVHDCQIGENGRFLELPPRRCFIFLNRKMSRRKELMRCFSI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27220			NB-ARC domain-containing disea...		Potri.001G404875 [exp]	0	1
AT5G46070			Guanylate-binding family prote...		Potri.017G016800 [exp]	10.24	0.8178
AT4G27190			NB-ARC domain-containing disea...		Potri.005G042900 [exp]	19.23	0.8115	Pt-RGA-II24.67
AT2G26170		CYP711A1, MAX1	MORE AXILLARY BRANCHES 1, "cyt...		Potri.006G226700 [exp]	26.88	0.7212	Pt-CYP711.1
AT4G27220			NB-ARC domain-containing disea...		Potri.005G041101 [exp]	38.53	0.8028
AT1G23380	HD	KNAT6S, KNAT6L,...	KNOTTED1-like homeobox gene 6 ...		Potri.008G188700 [exp]	46.47	0.7873
AT5G03860		MLS	malate synthase (.1.2)		Potri.012G094532 [exp]	46.73	0.7899
AT1G26310	MADS	CAL1, AGL10, CA...	CAULIFLOWER, AGAMOUS-like 10, ...		Potri.012G100200 [exp]	51.96	0.7778
AT1G18400	bHLH	bHLH044, BEE1	BR enhanced expression 1 (.1)		Potri.004G099400 [exp]	52.64	0.7617
AT1G61310			LRR and NB-ARC domains-contain...		Potri.001G444600 [exp]	64.49	0.7922
AT1G23090		SULTR3;3, AST91	sulfate transporter 91 (.1)		Potri.008G130400 [exp]	77.49	0.7659	Pt-SULTR3.3

Compare expression of checked genes

Potri.001G404875 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.