Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27220 310 / 2e-90 NB-ARC domain-containing disease resistance protein (.1) AT4G27190 307 / 1e-88 NB-ARC domain-containing disease resistance protein (.1) AT4G10780 292 / 4e-84 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G12210 291 / 1e-83 RFL1 RPS5-like 1 (.1) AT5G63020 283 / 8e-81 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G12280 282 / 2e-80 LRR and NB-ARC domains-containing disease resistance protein (.1) AT4G26090 279 / 2e-79 RPS2 RESISTANT TO P. SYRINGAE 2, NB-ARC domain-containing disease resistance protein (.1) AT1G61180 275 / 3e-78 LRR and NB-ARC domains-containing disease resistance protein (.1.2) AT1G12220 275 / 3e-78 RPS5 RESISTANT TO P. SYRINGAE 5, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G61310 272 / 1e-76 LRR and NB-ARC domains-containing disease resistance protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G404800 [exp] 1929 / 0 AT4G27220 323 / 5e-95 NB-ARC domain-containing disease resistance protein (.1) Potri.011G124000 [exp] 1448 / 0 AT4G27220 312 / 8e-92 NB-ARC domain-containing disease resistance protein (.1) Potri.011G124100 [exp] 851 / 0 AT4G27220 279 / 6e-80 NB-ARC domain-containing disease resistance protein (.1) Potri.011G127200 [exp] 850 / 0 AT4G27220 290 / 2e-83 NB-ARC domain-containing disease resistance protein (.1) Potri.018G145566 [exp] 809 / 0 AT4G27220 348 / 7e-105 NB-ARC domain-containing disease resistance protein (.1) Potri.001G405025 [exp] 796 / 0 AT4G10780 155 / 9e-41 LRR and NB-ARC domains-containing disease resistance protein (.1) Potri.T045200 [exp] 780 / 0 AT4G27220 348 / 1e-104 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014356 [exp] 775 / 0 AT4G27220 219 / 2e-58 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014336 [exp] 773 / 0 AT4G27220 320 / 2e-92 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039509 [exp] 163 / 1e-40 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039540 [exp] 160 / 1e-39 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10024173 [exp] 156 / 3e-38 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10026132 [exp] 149 / 4e-36 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10026109 [exp] 142 / 7e-34 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10022792 [exp] 136 / 3e-32 AT3G14470 343 / 7e-102 NB-ARC domain-containing disease resistance protein (.1) Lus10018937 [exp] 132 / 4e-31 AT3G07040 587 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10014922 [exp] 132 / 6e-31 AT3G07040 523 / 1e-171 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10041243 [exp] 130 / 2e-30 AT3G07040 526 / 1e-172 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10005321 [exp] 128 / 1e-29 AT3G14460 607 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain CL0361 [poplar] [flax] C2H2-zf PF02892 [poplar] [flax] zf-BED BED zinc finger CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.001G405100.3 pacid=42791086 polypeptide=Potri.001G405100.3.p locus=Potri.001G405100 ID=Potri.001G405100.3.v4.1 annot-version=v4.1 ATGGACCAAGAGCGCCAACAAAAGAAGAGGGTTAAACATACCGATCCATTTTGGGATCATGTTGAGAAGACAAATGATGGTGGTCCTTTCAAGTGCAAAT TTTGCAAATCTACATTTGCTGCGTCTACTTCAATCTCAAGGTTCAAATATCATTTGTCAGGAGAAAGTGGGAAAGGAGTTGGTATTTGTGGAAGAGTACC CGTTGATGTTAAAGCAGCAGCCTACCAAGCAATGCACAAAAAACAAAATCCCATCCCCCCAATTGATCATACAGTTCCTAATGTACAAGCTCAAAGAATA GAGCAAGAAGGGAGGGATCTCCCAGATATGGCAATGGAAGATTGGACAGAGAGTATGAGATCGGAAGAGTTGATGGTTGTTAACGAAGCTGGTGGATCGC GAGGTTCTCAAGGGCAAGGAGGATATCTTTTAGACATGGTAGATACAGAAAATTTGACACAGAGCAGAACCATGGAAGGGATTGCACTTATTGACCACGT TAGAGTTCATGAAGAGCAAGGGACAGACGTTTCAGATGGTGTAGTGGAGAATTTGACAGACAACTTCACCAGAGGTGTGTCTATAGTTACAGAAGAAAGT AGAGTTTCTGAAGGGCTTGATGCACATAAAGCTAAAGGAGAAGCATTGCTGACAACAAAGCTGGTAGGTCAGGCTTCTGACAGAAATAAGGAGACGATCT GGTCTTGGTTAATGAAGGATGACGTCTTAAGTGTTGGCATTTATGGGATGGGCGGTGTCGGAAAAACATCATTGGCGACGCAAATCCATAATCAGCTGCT ACAAAGACCAAGTTCTTTCAATTATGTGTTTTGGGTTACTGTATCACAAAATTTCACCATCAGTAAATTGCAGTATCTTATTGCCAAAGCTATTAATTTA GACCTTTCAAATGAAGAGGATGAGAAGAAAAGAGCTGCAAAGTTGTCTAAAGCATTAGTTGCAAAGGGAAAATCTGTTCTCATTCTAGATGATATATGGA ATCATTTTCTGCTAGAAACGGTGGGCATACCGGTTGGAGTTAACGCGTGCAAGTTGATTCTCACAAGTCGATCGTTAGAAGTTTGTCGGCGGATGGGTTG CCAAAAGAGCATCAAAGTAGAGCTTCTTACTAAAGAAGAAGCTTGGACTTTGTTCGTGGAGAAACTTGGAAATTATGCTACATTTTCTCCAGAAGTCGTA CAGATAGCAAAATCTGTTGCAGCAGAATGCGCTCGTCTACCACTTGGGATTATAGCAATGGCAGGAAGCATGAGGGGAGTGGATGACTTGCATGAATGGA GGAATGCATTGACAGAATTGAAACAATCAGAAGTTAGGGCAGAAGACATGGAAACTGAGGTATTCCATATTTTGAGATTTAGTTACATGCGCTTGAATGA CTCAGCATTGCAACAGTGTCTCTTATACTGTGCATATTTTCCTGAGGATTTCACCGTAGATAGAGAGGACTTGATAGGTTATTTGATCGACGAGGGAATA ATTCAACCAATGAAGAGCAGGCAGGCAGAATATGATAGAGGTCAGGCTATGCTTAACAAACTTGAAAATGCTTGCTTATTGGAAAGTTTTTTCAGCAACG AAAATTACAGAGTTTTCAAGATGCATGACTTGATTCGAGATATGGCTCTTCAGAAACTGAGGGAGAAATCACCAATCATGGTTGAAGGTGGGGAGCAACT AAAAGAATTACCAGATGAGAGCGAGTGGAAAGAGGAAGTCGTGAGAGTTTCTTTAATGGAAAATCACGTCAAGGAAATTCCCTCTGGCTGTGCACCAATG TGTCCCAAGCTTTCAACGTTGTTTTTATCCTTAAATTTCAAGCTAGAAATGATTGCGGATTCCTTTTTCAAACATTTGCAAGGGCTCAAGGTTCTTGATC TATCAGCCACCGCTATCCGGGAATTGCCAAGTTCCTTCTCCGATTTGGTGAATCTCACTGCTTTATATCTCAGAAAATGTGAGAAGCTAAGATATATACC ATCATTAGCAAAGCTTAGGGAGTTGAGGAAATTGGATCTCCGCTACACTGCACTGGAAGAACTGCCTCAAGGGATGGAAATGCTGTCCAATCTCAGGTAT CTTAATCTTTTTGGAAATAGTCTTAAGGAGATGCCTGCTGGTATACTACCTAAGCTCTCACAGCTACAATTCCTTAACGTGAACCGGCTGTTCGGCATTT TCAAGACAGTACGAGTAGAGGAAGTAGCATGCTTGAAGAGGATGGAAACTTTGAGATACCAATTCTGTGATCTTGTTGACTTCAAGAAGTACCTCAAATC TCCAGAAGTGAGGCAACCTCTGACCACATACTTCTTCACAATAGGACAACTAGGTGTGGATCGAGTAATGGATTCTTTACTTTATATGACACCAGATGAA GTCTTTTATAAAGAAGTTTTGGTTCATGATTGCCAAATCGGTGAAAAAGGAAGGTTTCTTGAGCTCCCAGAAGATGTTTCATCTTTCTCAATCGGAAGAT GTCACGACGCAAGGAGCTTATGCGATGTTTCTCCATTTAAACATGCAACTTCACTGAAGTCGTTGGGGATGTGGGAATGTGATGGGATAGAGTTCTTGGC TTCGATGTCAGAATCCTCCACGGATATATTTGAAAGCCTCGAATCGCTATACCTTAAAACTTTGAAGAACTTTTGTGTCTTCATTACAAGAGAAGGAGCT GCTCCACCATCATGGCAATCTAATGGTACCTTCTCTCATCTTAAAAAATTGAGAATAGGTGAATGTCTGAGTATGAAAAATCTGCTCGCCCTTGACTTGT TGCCAAATCTCACAAACTTGGAAGTGATTGAAGTTGATGACTGTGACCAAATGGAGGAGATAATAGCAGCAGAGGATGAAGAAGAAGGCATGATGGTTGA AGATAGCAGCAGCAGCAGCCACTACGCTGTTACCAGTCTCCCAAATTTGAAGGCTTTGAAATTAAGCAACTTACCGGAGCTAGAAAGCATTTTCCACGGG GAAGTGATTTGTGGTTCTGTACAAGAAATTCTTGTGGTTAACTGCCCAAATCTAAAGAGGATATCACTCTCTCATCGCAACCATGCTAATGGCCAAACAC CACTTCGAAAAATCCAGGCATATCCAAAAGAATGGTGGGAATCAGTGGAGTGGGGCAATTCCAACAGTAAGAATGCCCTTGAACCCCTGTGTGTGTTTCG GGAGTCTTTATTTTAG
AA sequence Show only first row Show all	>Potri.001G405100.3 pacid=42791086 polypeptide=Potri.001G405100.3.p locus=Potri.001G405100 ID=Potri.001G405100.3.v4.1 annot-version=v4.1 MDQERQQKKRVKHTDPFWDHVEKTNDGGPFKCKFCKSTFAASTSISRFKYHLSGESGKGVGICGRVPVDVKAAAYQAMHKKQNPIPPIDHTVPNVQAQRI EQEGRDLPDMAMEDWTESMRSEELMVVNEAGGSRGSQGQGGYLLDMVDTENLTQSRTMEGIALIDHVRVHEEQGTDVSDGVVENLTDNFTRGVSIVTEES RVSEGLDAHKAKGEALLTTKLVGQASDRNKETIWSWLMKDDVLSVGIYGMGGVGKTSLATQIHNQLLQRPSSFNYVFWVTVSQNFTISKLQYLIAKAINL DLSNEEDEKKRAAKLSKALVAKGKSVLILDDIWNHFLLETVGIPVGVNACKLILTSRSLEVCRRMGCQKSIKVELLTKEEAWTLFVEKLGNYATFSPEVV QIAKSVAAECARLPLGIIAMAGSMRGVDDLHEWRNALTELKQSEVRAEDMETEVFHILRFSYMRLNDSALQQCLLYCAYFPEDFTVDREDLIGYLIDEGI IQPMKSRQAEYDRGQAMLNKLENACLLESFFSNENYRVFKMHDLIRDMALQKLREKSPIMVEGGEQLKELPDESEWKEEVVRVSLMENHVKEIPSGCAPM CPKLSTLFLSLNFKLEMIADSFFKHLQGLKVLDLSATAIRELPSSFSDLVNLTALYLRKCEKLRYIPSLAKLRELRKLDLRYTALEELPQGMEMLSNLRY LNLFGNSLKEMPAGILPKLSQLQFLNVNRLFGIFKTVRVEEVACLKRMETLRYQFCDLVDFKKYLKSPEVRQPLTTYFFTIGQLGVDRVMDSLLYMTPDE VFYKEVLVHDCQIGEKGRFLELPEDVSSFSIGRCHDARSLCDVSPFKHATSLKSLGMWECDGIEFLASMSESSTDIFESLESLYLKTLKNFCVFITREGA APPSWQSNGTFSHLKKLRIGECLSMKNLLALDLLPNLTNLEVIEVDDCDQMEEIIAAEDEEEGMMVEDSSSSSHYAVTSLPNLKALKLSNLPELESIFHG EVICGSVQEILVVNCPNLKRISLSHRNHANGQTPLRKIQAYPKEWWESVEWGNSNSKNALEPLCVFRESLF

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27220			NB-ARC domain-containing disea...		Potri.001G405100 [exp]	0	1
AT3G18670			Ankyrin repeat family protein ...		Potri.011G015700 [exp]	8.00	0.8710
AT5G53760		ATMLO11, MLO11	MILDEW RESISTANCE LOCUS O 11, ...		Potri.011G121600 [exp]	10.24	0.8396
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Potri.017G053000 [exp]	12.88	0.8644
AT4G10500			2-oxoglutarate (2OG) and Fe(II...		Potri.011G151000 [exp]	16.34	0.8549
AT3G21510		ATHP3, AHP1	histidine-containing phosphotr...		Potri.013G028300 [exp]	19.10	0.7685	Pt-HPT2.2
					Potri.018G104500 [exp]	22.80	0.8427
AT5G32450			RNA binding (RRM/RBD/RNP motif...		Potri.001G070200 [exp]	27.49	0.8304
AT1G65780			P-loop containing nucleoside t...		Potri.017G140200 [exp]	28.28	0.7907
AT4G21310			Protein of unknown function (D...		Potri.004G031200 [exp]	29.39	0.8368
AT4G15450			Senescence/dehydration-associa...		Potri.006G164748 [exp]	35.21	0.8288

Compare expression of checked genes

Potri.001G405100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.