Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27220 213 / 9e-60 NB-ARC domain-containing disease resistance protein (.1) AT4G27190 192 / 2e-52 NB-ARC domain-containing disease resistance protein (.1) AT4G10780 183 / 3e-49 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G12290 174 / 2e-46 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT4G26090 174 / 3e-46 RPS2 RESISTANT TO P. SYRINGAE 2, NB-ARC domain-containing disease resistance protein (.1) AT1G12220 172 / 1e-45 RPS5 RESISTANT TO P. SYRINGAE 5, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G12280 168 / 3e-44 LRR and NB-ARC domains-containing disease resistance protein (.1) AT5G63020 163 / 2e-42 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G12210 162 / 2e-42 RFL1 RPS5-like 1 (.1) AT5G47260 161 / 1e-41 ATP binding;GTP binding;nucleotide binding;nucleoside-triphosphatases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G127300 [exp] 735 / 0 AT4G27220 272 / 1e-77 NB-ARC domain-containing disease resistance protein (.1) Potri.019G013140 [exp] 566 / 0 AT4G27220 294 / 1e-84 NB-ARC domain-containing disease resistance protein (.1) Potri.019G002800 [exp] 552 / 0 AT4G27220 317 / 9e-93 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014322 [exp] 548 / 0 AT4G27220 319 / 3e-92 NB-ARC domain-containing disease resistance protein (.1) Potri.019G011826 [exp] 546 / 0 AT4G27220 314 / 2e-90 NB-ARC domain-containing disease resistance protein (.1) Potri.018G145566 [exp] 536 / 0 AT4G27220 348 / 7e-105 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014348 [exp] 529 / 2e-179 AT4G27220 296 / 1e-86 NB-ARC domain-containing disease resistance protein (.1) Potri.019G011169 [exp] 540 / 1e-178 AT4G27220 301 / 5e-86 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014380 [exp] 530 / 4e-177 AT4G27220 302 / 5e-87 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039540 [exp] 103 / 7e-23 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10039509 [exp] 99 / 4e-21 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10002736 [exp] 89 / 8e-19 AT3G14470 317 / 1e-98 NB-ARC domain-containing disease resistance protein (.1) Lus10016316 [exp] 90 / 2e-18 AT3G14470 494 / 6e-156 NB-ARC domain-containing disease resistance protein (.1) Lus10014922 [exp] 87 / 1e-17 AT3G07040 523 / 1e-171 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10020016 [exp] 86 / 3e-17 AT3G07040 563 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10018937 [exp] 86 / 3e-17 AT3G07040 587 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10024173 [exp] 86 / 4e-17 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10028639 [exp] 84 / 1e-16 AT3G07040 579 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10002609 [exp] 80 / 2e-15 AT3G14470 364 / 9e-110 NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.001G406000.3 pacid=42790962 polypeptide=Potri.001G406000.3.p locus=Potri.001G406000 ID=Potri.001G406000.3.v4.1 annot-version=v4.1 ATGCAAAGAGCTCAGGAACTCTCAGAATTATTAGGGACGAAACGACCGCATTTCCTCATTTTGGATGATCTGTGGGACACTTTTGATCCGGAAAAGGTGG GCATTCCCATTCAAGAGGATGGATGCAAGTTGATTATTACAACTCGATCATTAAAAGTTTGTCGAGGGATGGGCTGCATACACAAAATCAAAGTGGAGCC TCTCACTTGTGATGAAGCTTGGACTTTGTTTATGGAGAAACTCAAGCATGATGTAGAACTTTCTCCAGAAGTTGAGCAAATAGCAAAATCGGTTACCACG GAGTGTGCTGGTTTGCCACTGGGAATTATTACAATGGCAGGAAGCATGAGGGGAGTGGATGACCTACATGAGTGGAGGAATACGTTGGAGAAACTGAAAG AATCAAAAGTTAGGGACATGGAAGATGAAGGATTCCGGTTATTGAGGTTCAGTTATGATCGCTTAGATGATTTAGCACTACAACAATGTTTCTTATACTG TGCATTATTTCCTGAAGGGATCAGTAGGGATGACTTGATAGGTTATTTGATTGATGAGGGAATAATCGATGGGATTAAGAGCAGGCAAGCAGAATTTGAT GAGGGCCATACGATGCTCAATGAACTTGAAAATGTCTGTTTACTGGAAAGTTGTGATGATTATAATGGTTGTAGAGGTGTCAGGATGCATGACTTGATTA GGGACATGACCCACCAAATACAGCTAATGAATTGTCCAATCATGGTTGGCGAAGAATTACGAGATGCGGACAAGTGGAAAGAGGATCTTGTAAGAGTGTC CTGGACAAGTGGTAAATTCAAGGAAATTTCTCCTAGCCATTCACCAAGGTGTCCCAATCTTTCAACCTTATTGTTACCCTGTAATGACGCTTTGAAATTT ATTGCAGATTCTTTTTTTAAGCAATTGAACAGGCTCAAGATTCTTGATCTGTCCAGGACAAACATTGAACTGTTACCAGATTCCGTCTCTGATTTGGTGA GTCTTCGTGCATTATTGCTCAAAGGATGCAAGCAGTTGAGGCACGTTCCATCATTAAAAAAGCTCAGGCTACTGAAGAGGTTGGATCTCAGTGATACTGT ACTTGAAAACGTGCCTCAAGACATGGAATACCTATCCAACCTTAGGTATCTTAAACTCAATGGATGTAGACAAAAAGAGTTTCCTACTGGAATATTACCT AAACTTTCTAGCCTGCAAGTCTTTGTACTAGATGATGATTGGGTGAATGGACAATACGCTCCAGTAACAGTTGAGGGAAAGGAAGTAACATGCTTGAGGA AGTTGGAAACTTTGAAATGTCATTTTGAACTTTTTTCCGACTTCGTGGGGTATCTCAAATCTTGGGATGAGACCCTATCACTAAGCACATACAATTTTTT AGTAGGACAATGTAACAATGACGATGTAGCTTTTTTGGAATTTTCTGGCAGAAGTAAAATAGTATGGTTGTGTAACTTCAATAATCGAACTTGCCTAGAG TTCCCAACTGACATTCAAGAACTGGTGATTTTGAAAAGTACATTGAAATTGTGTTGTGTGATAGAATGGAGAGTTTGCTTTCATCTTCTTGGTTCTGCTC TACTCCATTACCATTTCCATCTAATGACATATTTTCTCATCTCAAAGACTTTTATTGTTATGGGTGTACAAGTATGA
AA sequence Show only first row Show all	>Potri.001G406000.3 pacid=42790962 polypeptide=Potri.001G406000.3.p locus=Potri.001G406000 ID=Potri.001G406000.3.v4.1 annot-version=v4.1 MQRAQELSELLGTKRPHFLILDDLWDTFDPEKVGIPIQEDGCKLIITTRSLKVCRGMGCIHKIKVEPLTCDEAWTLFMEKLKHDVELSPEVEQIAKSVTT ECAGLPLGIITMAGSMRGVDDLHEWRNTLEKLKESKVRDMEDEGFRLLRFSYDRLDDLALQQCFLYCALFPEGISRDDLIGYLIDEGIIDGIKSRQAEFD EGHTMLNELENVCLLESCDDYNGCRGVRMHDLIRDMTHQIQLMNCPIMVGEELRDADKWKEDLVRVSWTSGKFKEISPSHSPRCPNLSTLLLPCNDALKF IADSFFKQLNRLKILDLSRTNIELLPDSVSDLVSLRALLLKGCKQLRHVPSLKKLRLLKRLDLSDTVLENVPQDMEYLSNLRYLKLNGCRQKEFPTGILP KLSSLQVFVLDDDWVNGQYAPVTVEGKEVTCLRKLETLKCHFELFSDFVGYLKSWDETLSLSTYNFLVGQCNNDDVAFLEFSGRSKIVWLCNFNNRTCLE FPTDIQELVILKSTLKLCCVIEWRVCFHLLGSALLHYHFHLMTYFLISKTFIVMGVQV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27220			NB-ARC domain-containing disea...		Potri.001G406000 [exp]	0	1
AT5G01750			Protein of unknown function (D...		Potri.016G131850 [exp]	1.73	0.8375
AT4G27220			NB-ARC domain-containing disea...		Potri.019G011826 [exp]	4.69	0.8701
AT3G47570			Leucine-rich repeat protein ki...		Potri.004G069001 [exp]	5.47	0.8280
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Potri.003G191401 [exp]	9.59	0.7277
AT3G14470			NB-ARC domain-containing disea...		Potri.012G121876 [exp]	17.14	0.7785
AT5G24320			Transducin/WD40 repeat-like su...		Potri.001G086600 [exp]	17.20	0.7073
AT3G14470			NB-ARC domain-containing disea...		Potri.012G121900 [exp]	17.88	0.8337
AT2G39750			S-adenosyl-L-methionine-depend...		Potri.010G199300 [exp]	21.67	0.6955
AT5G60570			Galactose oxidase/kelch repeat...		Potri.013G077800 [exp]	26.98	0.6666
AT1G56460			HIT zinc finger ;PAPA-1-like c...		Potri.002G195132 [exp]	27.49	0.6893

Compare expression of checked genes

Potri.001G406000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.