Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48150 518 / 3e-180 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT1G50600 505 / 9e-174 GRAS SCL5 scarecrow-like 5 (.1) AT2G04890 485 / 1e-168 GRAS SCL21 SCARECROW-like 21 (.1) AT4G17230 433 / 1e-146 GRAS SCL13 SCARECROW-like 13 (.1) AT1G21450 402 / 2e-133 GRAS SCL1 SCARECROW-like 1 (.1) AT1G07530 238 / 6e-69 GRAS SCL14, ATGRAS2 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) AT5G52510 234 / 2e-68 GRAS SCL8 SCARECROW-like 8 (.1) AT1G66350 228 / 2e-67 GRAS RGL1 RGA-like 1 (.1) AT2G29060 227 / 1e-65 GRAS GRAS family transcription factor (.1) AT5G59450 225 / 1e-65 GRAS SCL11 GRAS family transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G131100 [exp] 999 / 0 AT1G50600 505 / 8e-174 scarecrow-like 5 (.1) Potri.014G164400 [exp] 535 / 0 AT5G48150 716 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Potri.001G361700 [exp] 521 / 0 AT1G50600 637 / 0.0 scarecrow-like 5 (.1) Potri.016G009700 [exp] 462 / 1e-157 AT4G17230 675 / 0.0 SCARECROW-like 13 (.1) Potri.006G016200 [exp] 446 / 3e-151 AT4G17230 641 / 0.0 SCARECROW-like 13 (.1) Potri.005G186500 [exp] 413 / 6e-138 AT1G21450 685 / 0.0 SCARECROW-like 1 (.1) Potri.002G073400 [exp] 408 / 4e-136 AT1G21450 707 / 0.0 SCARECROW-like 1 (.1) Potri.001G326000 [exp] 259 / 6e-78 AT1G66350 296 / 2e-92 RGA-like 1 (.1) Potri.017G142400 [exp] 258 / 3e-77 AT5G52510 438 / 7e-146 SCARECROW-like 8 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035840 [exp] 788 / 0 AT5G48150 498 / 2e-172 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10036623 [exp] 684 / 0 AT5G48150 486 / 9e-169 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10012323 [exp] 520 / 0 AT5G48150 659 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10016596 [exp] 520 / 3e-180 AT5G48150 624 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10006369 [exp] 504 / 1e-174 AT5G48150 633 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10000539 [exp] 457 / 2e-155 AT4G17230 617 / 0.0 SCARECROW-like 13 (.1) Lus10017554 [exp] 449 / 2e-152 AT4G17230 612 / 0.0 SCARECROW-like 13 (.1) Lus10042776 [exp] 403 / 5e-134 AT1G21450 682 / 0.0 SCARECROW-like 1 (.1) Lus10029747 [exp] 402 / 1e-133 AT1G21450 682 / 0.0 SCARECROW-like 1 (.1) Lus10003772 [exp] 379 / 6e-129 AT5G48150 439 / 2e-154 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03514 [poplar] [flax] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Potri.001G409500.1 pacid=42792577 polypeptide=Potri.001G409500.1.p locus=Potri.001G409500 ID=Potri.001G409500.1.v4.1 annot-version=v4.1 ATGGAATCGCACCAGTATTTTGGATACGGTGTCACTGGTGCGGGCCTATCCTACTCATCTTCTTATCCGTCTGTTCCTTCTATACCTAATAGGTTGTTTG GCTCATTGAAATTTGATATAGGAAATTCACCCAGCTCACCCTTCTATACTGAATTTGATTGTGATACATACACTGCTACATTAAGTGACAGTCAGGAGTG CTACAGCTCCACAGATAATCTCTCAGGTGTTAGTCCTTCTCGTAACTCTTCACTTGAATCCAACAGTTATTTTAATAGGCCAAGCCCTTCTGTGGACTGT AGAATAGAAAGTCTACAGCTCTTTTCTGGTGGCACTTCGTCGTTGCAAGATGCAAGTTCTAGCCAGAACATAAAACACGCGTTGCAGGAATTGGAGACTG CTCTTATGGGCCCAGATGATGATGATGAACTGAACACGTCAAATGCTTCTCTGGGGGATAGTAGCACGCCACAGACATCAGATCAGAAACCTAGGGCCTG GCGCCAGGGTTCTCATGTTATCCAGAATCAGACATCTTTTGTTTCAAGGCAGAGGCAGTTGGGTGAAGGTGCTCATGTCGAGAAACGCCAAAAGTCAATG GAAGAAGTACCTTTGCATGGTATTCCACCTGGGGATCTGAAGCAGCTGTTGATTGCATGCGCTAAAGCTCTTGCCGAAAACAACGTGAGTGCTTTTGATA ATTTGACTGAGAAGGCCAGAAGTGTGGTGTCAATCAGTGGAGAACCAATCCAGCGTCTTGGTGCATACTTGATAGAGGGATTGGTAGCAAGGAAGGAGTC ATCAGGCGCTAATATTTATCGTACCCTTAAGTGCAGGGAGCCTGAAGGCAAGGACTTGCTGTCTTACATGCACATCTTGTACGAAATCTGTCCATACCTG AAGTTTGGTTACATGGCAGCCAATGGAGCCATTGCTGAAGCATGCAGAAATGAGGACCGCATCCATATAATAGACTTCCAAATTGCTCAGGGAACACAGT GGATGACTCTCCTTCAAGCTCTTGCAGCCAGACCAAGTGGTGCTCCACATGTGCGTATTACAGGTATTGATGATCCTGTTTCTAAATATGCCCGTGGGGA TGGATTAGAGGCAGTTGCGAGACGGTTGAGTGCAATTTCTGAGAAATTTAATATCCCTGTAGAGTTTCATGGGGTACCAGTTTTTGCTCCAGACGTGACA AAGGAAATGCTTGACGTTAGGCCTGGAGAGGCTCTAGCTGTAAACTTTCCCTTGCAGCTTCACCACACTCCTGATGAAAGTGTTGATGTGAACAACCCAA GAGATGGGCTGCTTCGTATGATCAAATCATTCAATCCCAAGGTAGTCACTTTGGTGGAGCAAGAATCAAATACAAACACAACCCCTTTCGTCACTCGGTT TGTAGAAACTCTAAACTATTACTTGGCAATGTTTGAGTCCATTGATGTGACGCTGCCAAGGGATCGAAAGGAGCGTATTAGTGTGGAGCAGCATTGTCTA GCCAGGGATATGGTAAATGTCATTGCTTGTGAGGGGAAGGAGAGGGTGGAGCGCCACGAGCTCTTTCGCAAGTGGAAGTCTAGATTCATGATGGCAGGTT TCCAGCAATACCCTTTGAGCACATATGTGAACTCTGTGATAAAGAGCCTGCTGAGGACTTACTCAGAGCACTATACATTGGTGGAAAATGATGGAGCTAT GCTGTTGGGATGGAAAGATAGGAATTTGATATCTGCTTCTGCCTGGCATTGA
AA sequence Show only first row Show all	>Potri.001G409500.1 pacid=42792577 polypeptide=Potri.001G409500.1.p locus=Potri.001G409500 ID=Potri.001G409500.1.v4.1 annot-version=v4.1 MESHQYFGYGVTGAGLSYSSSYPSVPSIPNRLFGSLKFDIGNSPSSPFYTEFDCDTYTATLSDSQECYSSTDNLSGVSPSRNSSLESNSYFNRPSPSVDC RIESLQLFSGGTSSLQDASSSQNIKHALQELETALMGPDDDDELNTSNASLGDSSTPQTSDQKPRAWRQGSHVIQNQTSFVSRQRQLGEGAHVEKRQKSM EEVPLHGIPPGDLKQLLIACAKALAENNVSAFDNLTEKARSVVSISGEPIQRLGAYLIEGLVARKESSGANIYRTLKCREPEGKDLLSYMHILYEICPYL KFGYMAANGAIAEACRNEDRIHIIDFQIAQGTQWMTLLQALAARPSGAPHVRITGIDDPVSKYARGDGLEAVARRLSAISEKFNIPVEFHGVPVFAPDVT KEMLDVRPGEALAVNFPLQLHHTPDESVDVNNPRDGLLRMIKSFNPKVVTLVEQESNTNTTPFVTRFVETLNYYLAMFESIDVTLPRDRKERISVEQHCL ARDMVNVIACEGKERVERHELFRKWKSRFMMAGFQQYPLSTYVNSVIKSLLRTYSEHYTLVENDGAMLLGWKDRNLISASAWH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G48150	GRAS	PAT1	phytochrome a signal transduct...		Potri.001G409500 [exp]	0	1
AT2G35980		NHL10, YLS9, AT...	YELLOW-LEAF-SPECIFIC GENE 9, A...		Potri.006G204300 [exp]	3.46	0.9318	B13.1
AT5G54490		PBP1	pinoid-binding protein 1 (.1)		Potri.013G151000 [exp]	4.89	0.9208
AT3G25730	AP2_ERF	EDF3	ethylene response DNA binding ...		Potri.004G220550 [exp]	5.65	0.9116
AT2G17290		ATCPK6, ATCDPK3...	calcium dependent protein kina...		Potri.009G168600 [exp]	7.54	0.8830	CDPK3.2
AT1G27200			Domain of unknown function (DU...		Potri.008G192000 [exp]	9.48	0.8983
AT3G25730	AP2_ERF	EDF3	ethylene response DNA binding ...		Potri.004G220400 [exp]	10.39	0.8907
AT1G76650		CML38	calmodulin-like 38 (.1.2.3)		Potri.005G259900 [exp]	12.40	0.8877
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014334 [exp]	12.96	0.8678
AT5G42380		CML39, CML37	CALMODULIN LIKE 39, calmodulin...		Potri.002G001400 [exp]	14.07	0.8778
AT5G59820	C2H2ZnF	ZAT12, RHL41	RESPONSIVE TO HIGH LIGHT 41, C...		Potri.009G027700 [exp]	14.69	0.9021	RHL41.1

Compare expression of checked genes

Potri.001G409500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.