Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27190 544 / 4e-178 NB-ARC domain-containing disease resistance protein (.1) AT4G27220 473 / 1e-151 NB-ARC domain-containing disease resistance protein (.1) AT4G26090 317 / 1e-93 RPS2 RESISTANT TO P. SYRINGAE 2, NB-ARC domain-containing disease resistance protein (.1) AT1G51480 268 / 1e-75 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G61180 266 / 3e-75 LRR and NB-ARC domains-containing disease resistance protein (.1.2) AT1G12280 263 / 2e-74 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G12210 263 / 3e-74 RFL1 RPS5-like 1 (.1) AT1G63350 261 / 2e-73 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G61310 259 / 1e-72 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G15890 255 / 1e-71 Disease resistance protein (CC-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G147100 [exp] 369 / 5e-113 AT4G26090 775 / 0.0 RESISTANT TO P. SYRINGAE 2, NB-ARC domain-containing disease resistance protein (.1) Potri.011G124000 [exp] 310 / 9e-91 AT4G27220 312 / 8e-92 NB-ARC domain-containing disease resistance protein (.1) Potri.011G124100 [exp] 308 / 1e-89 AT4G27220 279 / 6e-80 NB-ARC domain-containing disease resistance protein (.1) Potri.018G136700 [exp] 309 / 3e-89 AT4G27190 323 / 4e-94 NB-ARC domain-containing disease resistance protein (.1) Potri.T045000 [exp] 298 / 2e-85 AT4G27220 322 / 1e-94 NB-ARC domain-containing disease resistance protein (.1) Potri.018G136500 [exp] 292 / 2e-83 AT4G27220 358 / 8e-108 NB-ARC domain-containing disease resistance protein (.1) Potri.018G145566 [exp] 290 / 3e-83 AT4G27220 348 / 7e-105 NB-ARC domain-containing disease resistance protein (.1) Potri.018G135600 [exp] 290 / 2e-82 AT4G27220 338 / 7e-100 NB-ARC domain-containing disease resistance protein (.1) Potri.001G446016 [exp] 284 / 4e-81 AT4G27190 281 / 4e-80 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039509 [exp] 183 / 7e-47 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039540 [exp] 160 / 1e-39 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10007261 [exp] 159 / 4e-39 AT3G14460 654 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10022792 [exp] 155 / 3e-38 AT3G14470 343 / 7e-102 NB-ARC domain-containing disease resistance protein (.1) Lus10026109 [exp] 152 / 4e-37 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10026132 [exp] 150 / 1e-36 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10024173 [exp] 146 / 3e-35 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10014922 [exp] 143 / 1e-34 AT3G07040 523 / 1e-171 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10020016 [exp] 142 / 4e-34 AT3G07040 563 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10018937 [exp] 141 / 6e-34 AT3G07040 587 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.001G416900.1 pacid=42790262 polypeptide=Potri.001G416900.1.p locus=Potri.001G416900 ID=Potri.001G416900.1.v4.1 annot-version=v4.1 ATGGAAATCGTGGGTGCATTTGTTGCTGAAGTTACTCAATGTATGTCCATCTTTCTTTTTAGAAAGATTTCCACCCTTGTAAGTCTCCATGGTAATATGA AATCACTGCAGAGTGAAATACAAAAACTCATTAGCCGAAAGAACGAGTTAGAAGAAGATATTAGGCTAGCCATAACAGAAGGGAAGAATCCAACATCGCA AGCTTTGAATTGGATAAAAAGGGTGGAGGAAATTGAGCATGATGTGCAGTTGATGATGGAGGATGCTGGCAATTCTTGTGTCTGCGGAAGCAATCTAGAC TGTTGTATGCATTCCGGTCTTCGACTCAGAAAAACGGCGAAAAAGAAGTGTGGAGAGGTGAAACAACTTCTTATTGATTCATGCACTTTGCATATCATGG TGCTTGACAGAAAGCCTCCAATAAAACCAGTGGAAAATATGACAGCACCATCTCTTGCAGGTCAGAAAGCAGCAGAAGAAATGTTAGAGGAGCTTCTGCG ATGCTTGAATGATGGTGCCATCAAAAGGATTGCTGTATGGGGGATGGGGGGAATCGGAAAGACTACACTAGTAAAAAACTTCAATAACCTTCTTGAGTCC CCTCCCTTGATGCAGTCATTCGACGTAGTCATTTGGGTCACAGTTTCGAAGGACTTGGACTTGAGAAGGGTTCAATCTCGAATTGCTGAGAGATTGAATT TAGAATTTGACGTTGGAGAGAGCACAGAAGGAAGAGCTATAAAACTGCATGAAACTTTGATGAAGACGAGGTTTCTTCTCATTCTTGATGATGTCTGGGA GAAACTTGATCTGGACATTGTGGGTATTCCACAAGATGATGAACATGCCGAGTGCAAGATACTATTGACAACAAGAAATCTTGATGTGTGCAGGGGAATG ATGACCACTGTAAACATCAAAATGGATGTTTTGAATGAAGCAGCAGCTTGGAATTTGTTTGCAGAAAGCGCAGGAGATGTGGTTGAGTTGGAAGTAATAA ATCCTCTAGCAAGAGCAATAGCTAGAAGATGTTGTGGGTTGCCATTGGCAATCAAGACCATGGGGAGTTCGATGAGGAACAAAAACATGACTGAGCTCTG GGAGAACGTGCTTTGCCAATTGCAACATTCAACGCTTCATGTCAGAAGTGTTATGGAAGAAGTTTATCTGCCATTGAATCTGAGTTACATCTCGTTACCA AGTAAGATTCATCGGTGGTGCTTTTTGTACTGCTCTTTATACCCCGAAAACTTTTCAATTGAAGCAAATGAACTGATACAATGCTGGATTGCTGATGGCT TAATTGATGACCACCAAACTCTTGAGCAGTCATTCAATTATGGGATTTCTTTGATTGAAAATTTGAAGGATTCTTGCATGCTAGAACAAGGTGAAGGCGT TGGAACTGTAAGGATGCATGGTTTGGCGAGGGATATGGCCATATGGATTTCAATAGAAACAGGATTCTTTTGCCAAGCAGGTACTTCAGTGTCTGTCATA CCACAGAAGTTGCAGAAATCTCTCACAAGGATTTCATTTATGAACTGCAACATTACAAGGATTCCTAGCCAACTGTTTAGATGCTCCAGGATGACCGTGT TACTTCTCCAGGGTAATCCTCTAGAGAAAATACCTGATAACTTATTTCGAGAAGTAAGAGCACTTAGAGTCCTGAATTTAAGTGGCACTCTAATTAAATC ATTGCCTTCTACCCTACTTCATCTAGTCCAGCTCAGGGCCTTTCTTGTAAGAGACTGTTGTTATCTAGAAAAACTACCCCTTTTTGGAGATCTTTGCGAA CTCCAAATGCTTGATCTCTCTGGCACACGGCTGCGAGAACTACCCTGGAAAAGGGGTATGCTTGGTAATCTCAGATATTTGAACTTGTCTCACACCCTTT ACTTAGAAAACATCGAAACTGGAACACTTCGGGGATTATCTAGCCTTGAGGCCTTGGACATGTCTTCCAGTGCATATAAATGGGATGCTATGGGTAACGT AGGAGAACCAAGAGCAGCATTTGACGAGTTACTATCGTTGCAGAAACTTTCAGTTCTTCACCTGAGGCTAGACTCTGCCAATTGCCTTACCCTAGAAAGT GACTGGTTGAAACGTTTGAGGAAGTTCAACATAAGGATTAGTCCAAGGAGCTGTCATTCAAATTATCTGCCTACTCAACATGATGAGAAGAGGGTCATTC TTAGAGGGGTTGATCTGATGACAGGAGGGCTCGAAGGATTATTCTGCAATGCAAGTGCACTGGACCTTGTAAATTGTGGAGGCATGGATAATTTATCTGA AGTAGTTGTCAGGCATAATCTGCATGGCCTATCAGGCTTAAAGTCTCTGACGATATCAAGTTGTGATTGGATCACAAGTTTGATTAATGGGGAGACTATC CTGAGAAGCATGTTACCTAATTTGGAGCATTTGAAACTTAGACGCTTGAAAAATCTGTCAGCTATTTTGGAAGGAATTGTCCCTAAAAGAGGCTGCCTCG GCATGTTGAAGACTTTAGAAGTGGTAGATTGCGGAAGACTGGAGAAGCAGCTGATATCCTTTTCTTTTCTTCGACAGCTAAAAAACCTTGAAGAGATTAA GGTAGGTGAATGCAGAAGGATCAAACGTCTTATAGCTGGATCTGCGTCTAATTCAGAGCTTCCAAAGTTAAAAATAATAGAAATGTGGGATATGGTCAAT CTGAAGGGTGTCTGCACAAGAACAGTACATTTGCCGGTTCTGGAGAGGATTGGGGTGAGCAACTGCTCATTGTTGGTGAAGCTTCCTATCACAGCCTACA ACGCTGCAGCTATTAAAGAAATAAGAGGAGAGCTGGAATGGTGGAATAATATCACATGGCAAGATTATGAGATTAAATCGCTTGTTCAGCGACGATTCCA AGCATGTGCAGTCTCAACATCACTCGGAAAAGAAGAGAGGGCTGAAGAACCAGAAACACCCGAGAGAAGTTGGTAA
AA sequence Show only first row Show all	>Potri.001G416900.1 pacid=42790262 polypeptide=Potri.001G416900.1.p locus=Potri.001G416900 ID=Potri.001G416900.1.v4.1 annot-version=v4.1 MEIVGAFVAEVTQCMSIFLFRKISTLVSLHGNMKSLQSEIQKLISRKNELEEDIRLAITEGKNPTSQALNWIKRVEEIEHDVQLMMEDAGNSCVCGSNLD CCMHSGLRLRKTAKKKCGEVKQLLIDSCTLHIMVLDRKPPIKPVENMTAPSLAGQKAAEEMLEELLRCLNDGAIKRIAVWGMGGIGKTTLVKNFNNLLES PPLMQSFDVVIWVTVSKDLDLRRVQSRIAERLNLEFDVGESTEGRAIKLHETLMKTRFLLILDDVWEKLDLDIVGIPQDDEHAECKILLTTRNLDVCRGM MTTVNIKMDVLNEAAAWNLFAESAGDVVELEVINPLARAIARRCCGLPLAIKTMGSSMRNKNMTELWENVLCQLQHSTLHVRSVMEEVYLPLNLSYISLP SKIHRWCFLYCSLYPENFSIEANELIQCWIADGLIDDHQTLEQSFNYGISLIENLKDSCMLEQGEGVGTVRMHGLARDMAIWISIETGFFCQAGTSVSVI PQKLQKSLTRISFMNCNITRIPSQLFRCSRMTVLLLQGNPLEKIPDNLFREVRALRVLNLSGTLIKSLPSTLLHLVQLRAFLVRDCCYLEKLPLFGDLCE LQMLDLSGTRLRELPWKRGMLGNLRYLNLSHTLYLENIETGTLRGLSSLEALDMSSSAYKWDAMGNVGEPRAAFDELLSLQKLSVLHLRLDSANCLTLES DWLKRLRKFNIRISPRSCHSNYLPTQHDEKRVILRGVDLMTGGLEGLFCNASALDLVNCGGMDNLSEVVVRHNLHGLSGLKSLTISSCDWITSLINGETI LRSMLPNLEHLKLRRLKNLSAILEGIVPKRGCLGMLKTLEVVDCGRLEKQLISFSFLRQLKNLEEIKVGECRRIKRLIAGSASNSELPKLKIIEMWDMVN LKGVCTRTVHLPVLERIGVSNCSLLVKLPITAYNAAAIKEIRGELEWWNNITWQDYEIKSLVQRRFQACAVSTSLGKEERAEEPETPERSW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27190			NB-ARC domain-containing disea...		Potri.001G416900 [exp]	0	1
AT2G27035		AtENODL20	early nodulin-like protein 20 ...		Potri.001G219800 [exp]	9.00	0.6243
					Potri.008G130950 [exp]	10.58	0.6975
AT2G43890			Pectin lyase-like superfamily ...		Potri.017G006500 [exp]	19.39	0.6279
AT1G54520			unknown protein		Potri.008G152400 [exp]	24.28	0.6573
AT3G43920		DCL3, ATDCL3	dicer-like 3 (.1.2.3)		Potri.006G218850 [exp]	28.91	0.6393
					Potri.019G109200 [exp]	29.22	0.6072
AT1G69940		ATPPME1	Pectin lyase-like superfamily ...		Potri.006G186100 [exp]	33.85	0.6351
AT1G55580	GRAS	SCL18, LAS	SCARECROW-LIKE 18, Lateral Sup...		Potri.012G020200 [exp]	42.08	0.6302	Pt-LAS.3
AT5G55980			serine-rich protein-related (....		Potri.001G371400 [exp]	62.73	0.5930
					Potri.002G259500 [exp]	65.72	0.5925

Compare expression of checked genes

Potri.001G416900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.