Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27190 253 / 3e-69 NB-ARC domain-containing disease resistance protein (.1) AT4G27220 250 / 1e-68 NB-ARC domain-containing disease resistance protein (.1) AT4G26090 223 / 1e-59 RPS2 RESISTANT TO P. SYRINGAE 2, NB-ARC domain-containing disease resistance protein (.1) AT1G12280 209 / 2e-55 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G12220 204 / 1e-53 RPS5 RESISTANT TO P. SYRINGAE 5, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G61180 203 / 2e-53 LRR and NB-ARC domains-containing disease resistance protein (.1.2) AT5G63020 202 / 4e-53 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G12210 200 / 2e-52 RFL1 RPS5-like 1 (.1) AT1G61310 199 / 5e-52 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G61190 192 / 8e-50 LRR and NB-ARC domains-containing disease resistance protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G443400 [exp] 2065 / 0 AT4G27220 227 / 3e-61 NB-ARC domain-containing disease resistance protein (.1) Potri.001G420000 [exp] 1913 / 0 AT4G27190 249 / 4e-68 NB-ARC domain-containing disease resistance protein (.1) Potri.001G445700 [exp] 1909 / 0 AT4G27190 267 / 5e-74 NB-ARC domain-containing disease resistance protein (.1) Potri.001G446650 [exp] 1907 / 0 AT4G27190 247 / 2e-67 NB-ARC domain-containing disease resistance protein (.1) Potri.001G444500 [exp] 1818 / 0 AT4G27190 241 / 5e-65 NB-ARC domain-containing disease resistance protein (.1) Potri.001G444000 [exp] 1734 / 0 AT4G27190 224 / 8e-60 NB-ARC domain-containing disease resistance protein (.1) Potri.001G444050 [exp] 1727 / 0 AT4G27220 261 / 4e-72 NB-ARC domain-containing disease resistance protein (.1) Potri.001G446332 [exp] 1696 / 0 AT4G27220 241 / 1e-65 NB-ARC domain-containing disease resistance protein (.1) Potri.001G426430 [exp] 1695 / 0 AT4G27190 276 / 4e-77 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002945 [exp] 108 / 2e-23 AT3G07040 580 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10020016 [exp] 107 / 3e-23 AT3G07040 563 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10024173 [exp] 104 / 3e-22 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10005218 [exp] 101 / 4e-21 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1) Lus10021769 [exp] 101 / 5e-21 AT4G33300 583 / 0.0 ADR1-like 1 (.1.2) Lus10032759 [exp] 99 / 7e-21 AT1G33560 543 / 0.0 ACTIVATED DISEASE RESISTANCE 1, Disease resistance protein (CC-NBS-LRR class) family (.1) Lus10039540 [exp] 100 / 1e-20 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10041243 [exp] 98 / 4e-20 AT3G07040 526 / 1e-172 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10006794 [exp] 93 / 3e-19 AT3G14470 264 / 2e-78 NB-ARC domain-containing disease resistance protein (.1) Lus10022351 [exp] 94 / 6e-19 AT3G14470 369 / 1e-108 NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Potri.001G419800.3 pacid=42789863 polypeptide=Potri.001G419800.3.p locus=Potri.001G419800 ID=Potri.001G419800.3.v4.1 annot-version=v4.1 ATGGCTATCGAAAGTGTTGGTGAATCCATTGTATCTAAGATAGCAGAACTCTTGGTGGAACCAACAATAAGGCAATTTCGTTACATGTTCTGTTTCAACA ATTTTGTTCAAGAATTCAATGAACAAAAGAAGAACCTGGCTTTGACACTAGATCGTTTGCAAAAGGCTGTCGAAGTTGCTGAAAGAAATGCTGAAGAAAT TGAGAAAGATGTCAACAAATGGTTGGAGGATGCAAACAACGAAATTAAAGGTGTGGATCCATTGGAAAATGAAACAGGAAAAAATGGCAAATGCTTTACT TGGTGTCCAAATTCGATACGACAATTCAAGTTAAGCAAGGCACTGGCAAAGAAGACGGAGACTTTGAGAAACCTTGAAGAAAATAGCAAAAAGTTTCCAA CAGTGTCCCACAAAGCACCTCTTCAAGACATAGAATTTCTTCCATCAAAGGGATTCACACCCTCAGAATCGTCAAAAAAAGCTTTTGAACAAATTATGGA AGCTCTCAAAGATGACAGTATCGATATGATCGGACTGTACGGCATGGGAGGGGTGGGTAAAACCACCCTAGTGAAAGAAGTAGGCAGGAGAGCCAAAGAG TTGCATCTTTTTCATGAAGTTTTGATAGCCACGGTGTCCCAGAATCCAAATGTCACAGACATTCAGGATCAAATGGCAGATAGTTTAGGTCTGCGTTTTG ACGAGAAAAGTAAAAAAGGGAGAGCAGATCGATTATGGCAGAGACTGCAGGGAAAGAAGATGCTTATAATCCTAGATGATGTCTGGAAAGTTATTAACAT GGAAGAGATAGGGATCCCATTTGGTGATGCTCACAAGGGTTGTAAAATTCTTCTAACAACACGTCTTAAGGATATATGTTCTTATATGGAGTGCCAGCCA ATAGTGTTGTTAAGTCTCTTATCTGAAAATGAAGCATGGGCTTTATTCAAAATCAATGCAGGTTTACATGATGAGGACTCTACCTTGAACACAGTGGCAA AGAAGGTTGCGAGAGAATGTAAAGGATTGCCTATAGCACTTGTGACAGTGGGAAGGGCTCTAAGAGATAAATCTGCTGTTGAGTGGGAAGTAGCGTTTAA AGAGCTCAAAAACTCTCAATATTTGCACATGGAACAAATTGATGAACAAAAAAATGCATATGCATGTCTCAAGTTGAGTTATGATTATTTGAAGCACGAG AAAACCAAGTTATGTTTCTTGCTATGCTGTTTATTTCCAGAAGATTACAACATTCCAATTGAGTACTTGACGAGATACGCAGTTGGCTATGGGTTACATC AAGATGTGGAGTCCATTGAAGATGCAAGGGAACGAGTTTATGTGGCAATCAAAAACCTCAAAGCTTGTTGTATGCTGTTAGGAACTAAAAGTGAAGAATA TGTGAAAATGCATGACTTGGTTCGTGATGTTGCAATTCAGATAGCATCATCAGAAAAATACGGATTCATGGTAAAGGCTGGCATTGGGTTGGAGGAGTGG CCAATGAGCAATAAAAGCTTTGAAGGTTGTACAGTAATTTCCTTAATGGGCAATGAACTCACAGAACTTCCTGAAGGATTGGTGTGTCCACAGCTCAAAG TTCTATTGTTAGGACTGGATGATGGTTTGAATGTTCCAGAGAGGTTTTTTGAAGGGATGAAAGCAATTGAAGTTTTGTCTCTTGATGGAGGGTGTTTGTC ATTGCAATCACTTGAATTCTCAACGAACCTTCAATCGTTGTTGTTGATCAGGTGTAAATGCAAGGGCCTCATTTGGTTGAGAAAGCTGCAAAGACTTAAG ATTCTTGGTTTTATAAGGTTCTCTTCCGTTGAAGAATTACCTAGTGAAATGGGGGAGCTCAAGGAGTTGAGGTTGTTGGATGTGACAGGTTGTGAATTGC TAAGAAGGATTCCTGTGAATTTGATTGGAAGGTTGAAGAAGTTAGAAGAACTGTTGATCGGGGATGAGAGCTTCAAGGGATGGGATGTTGTTGGATGTGA CAGCACAGAAGGAATGAATGCGAGCCTAACAGAACTCGATTCGCTGTCTCATTTAGCTGTATTATCATTGATGATACCGAAGGTTGAATGCATTCCCAGA GATTTTGTTTTTCCCAGGCTGCTCAAATATGATATACTATTAGGGGATTGGTATTCACTCGATAAAGAATACCCAACCTCGACAAGGTTATATTTGGGTG ATATCAGCGCCACATCCTTCAAAGCAAAGACATTTGAGCAGTTGTTTCCTACTGTGTCTCAAATTGGTTTTAGCAACATTGAGGGTTTAAAAAATATAGT ATTGTCCTCTGATCAGATGACCATCCATGGCCATGGGTCGCAAAAGGACTTCTTACAAAGATTAGAACATGTACAAGTGACTGCATGTGGGGATATTCGC ACTCTGTTTCAAGCAAAATGGCGGCAAGCTTTGAAAAATCTAGTGAGTGTGGAAATTAATGAATGCGAATCATTGGAAGACGTATTTGAATTGGGTGAGG CTGATGAAGGAATTAACGAGGAGAAGGAGCTGCGGCTGCTATCATCTTTAACAAAGTTACACCTGCAATGGTTACCTGAGCTCAAATGTATATGGAAGGG GCCCACCAGACATGTCAGCCTCCAAAGTCTTATTCATCTGGAGTTGTTGTCTCTTGACAAACTGACATTTATCTTCACACCGTCCCTCGCTCAAAGTCTT ATTCATCTGGAAACACTACAGATAGAACAATGCGATGAATTGAAGAGTCTTATCAAAGAACAGGATGGCGAAAGGGAAATAATTCCAAACTCTCTTGGCT TCCCAAAATTAAAAACTCTTTCTATAAGTGGCTGTGATAAACTGGAACATGTCTTCCCTGTCTCCGTGTCTCCAAGTCTTCTGAACCTCGAACAGATGAA GATTACATTAGCTGACAATTTAAAGCAAATATTTTACAGTGGAGAAGGAGATGCACTCACCAGAGATGGCGTCATCAACTTCCCTCAGCTAAGAAAATTG ATTCTTTCAAATTGCAGTTTTTTTGGTCCAAAGAATTCTGCTGCCCAGTTGCCTTCTTTGCAAGTGTTAACCATTCATGGCCACGAAGAATTGGGTAATT TGTTGGCACAGCTCCAAGGGTTAACAAGTTTGGAAACATTACATGTGTACTCCCTGCCTGTGCCTGACATGAGGTGTATATGGAAAGTCCTTGTGCTAAG CCATTTGACTTCTTTGGTGGTGAGGAATTGTAAAAGACTAACACATGTATGCACAAGCATCATGATTACTAGTCTAGTTCAACTGGAAGTTCTAGAGATA TCAACTTGTGAGGAATTGGAGCAAATAATTGCTAAGGATAATGATGATAAAAAGAATCAGATATTATTAGGGAGTGATCTTCAATCTTCATGCTTTTCTA ATTTGTGTCAACTTAAGATCAGAGGATGCAACAAGTTGAAGAGTCTCTTCCCAGTAGCCATGGCTTCAAGTCTCAAAAAGCTCCAAAAACTTGAAGTACG AGAATCCTCTCAAATATTGGGAGTATTTGGACAGGATGATCATGCTTCACCTATCGATGTTGAGAAGGAGATAGTACTCCCTGATCTGCAAGAGCTGTCT CTAGAACAATTACCGAGTATTGTCTGCTTTAGTCTTGGATGTTATGATTTCTTATTCCCTCATTTGGAGACGTTGAAGGTGCATCAATGTCCAAAATTGA CCACAAAATTTGGTACTACATCAAATGGTTCCATGCGGGCTCAATCAGAGGTATCTCAAGTAGTCGAGGATTCAAGCACTGGTTGCTCCGTGCCAACCAC CACTTGTAGAATGTGGACCCGAAATAATGGGTGGTGGGAAGAGGAAAAAGTGGAAGAGGAAGAGGAAGAGGAAAAGGTGGAAGAGGAAGAGGAATGGGAG GAGGAAGAGGAAGAGGAAGAGGAAAAGGTGGAAGAGGAAGAGGAATGGGAGGAGGGAGAGGGAGAGGAAGAGGAAGAGGAAAAGGTGGAAGAGGAAAAAG ACGAGGATGGAGGTGGTCATGATAATTAA
AA sequence Show only first row Show all	>Potri.001G419800.3 pacid=42789863 polypeptide=Potri.001G419800.3.p locus=Potri.001G419800 ID=Potri.001G419800.3.v4.1 annot-version=v4.1 MAIESVGESIVSKIAELLVEPTIRQFRYMFCFNNFVQEFNEQKKNLALTLDRLQKAVEVAERNAEEIEKDVNKWLEDANNEIKGVDPLENETGKNGKCFT WCPNSIRQFKLSKALAKKTETLRNLEENSKKFPTVSHKAPLQDIEFLPSKGFTPSESSKKAFEQIMEALKDDSIDMIGLYGMGGVGKTTLVKEVGRRAKE LHLFHEVLIATVSQNPNVTDIQDQMADSLGLRFDEKSKKGRADRLWQRLQGKKMLIILDDVWKVINMEEIGIPFGDAHKGCKILLTTRLKDICSYMECQP IVLLSLLSENEAWALFKINAGLHDEDSTLNTVAKKVARECKGLPIALVTVGRALRDKSAVEWEVAFKELKNSQYLHMEQIDEQKNAYACLKLSYDYLKHE KTKLCFLLCCLFPEDYNIPIEYLTRYAVGYGLHQDVESIEDARERVYVAIKNLKACCMLLGTKSEEYVKMHDLVRDVAIQIASSEKYGFMVKAGIGLEEW PMSNKSFEGCTVISLMGNELTELPEGLVCPQLKVLLLGLDDGLNVPERFFEGMKAIEVLSLDGGCLSLQSLEFSTNLQSLLLIRCKCKGLIWLRKLQRLK ILGFIRFSSVEELPSEMGELKELRLLDVTGCELLRRIPVNLIGRLKKLEELLIGDESFKGWDVVGCDSTEGMNASLTELDSLSHLAVLSLMIPKVECIPR DFVFPRLLKYDILLGDWYSLDKEYPTSTRLYLGDISATSFKAKTFEQLFPTVSQIGFSNIEGLKNIVLSSDQMTIHGHGSQKDFLQRLEHVQVTACGDIR TLFQAKWRQALKNLVSVEINECESLEDVFELGEADEGINEEKELRLLSSLTKLHLQWLPELKCIWKGPTRHVSLQSLIHLELLSLDKLTFIFTPSLAQSL IHLETLQIEQCDELKSLIKEQDGEREIIPNSLGFPKLKTLSISGCDKLEHVFPVSVSPSLLNLEQMKITLADNLKQIFYSGEGDALTRDGVINFPQLRKL ILSNCSFFGPKNSAAQLPSLQVLTIHGHEELGNLLAQLQGLTSLETLHVYSLPVPDMRCIWKVLVLSHLTSLVVRNCKRLTHVCTSIMITSLVQLEVLEI STCEELEQIIAKDNDDKKNQILLGSDLQSSCFSNLCQLKIRGCNKLKSLFPVAMASSLKKLQKLEVRESSQILGVFGQDDHASPIDVEKEIVLPDLQELS LEQLPSIVCFSLGCYDFLFPHLETLKVHQCPKLTTKFGTTSNGSMRAQSEVSQVVEDSSTGCSVPTTTCRMWTRNNGWWEEEKVEEEEEEEKVEEEEEWE EEEEEEEEKVEEEEEWEEGEGEEEEEEKVEEEKDEDGGGHDN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27190			NB-ARC domain-containing disea...		Potri.001G419800 [exp]	0	1
AT1G61310			LRR and NB-ARC domains-contain...		Potri.001G444600 [exp]	1.73	0.9333
AT4G27220			NB-ARC domain-containing disea...		Potri.001G446332 [exp]	2.00	0.9481
AT4G27190			NB-ARC domain-containing disea...		Potri.001G446016 [exp]	4.00	0.9285
AT4G27190			NB-ARC domain-containing disea...		Potri.001G444000 [exp]	5.47	0.9110
AT1G03670			ankyrin repeat family protein ...		Potri.013G133800 [exp]	7.07	0.9256
AT5G05830			RING/FYVE/PHD zinc finger supe...		Potri.006G094000 [exp]	8.83	0.8860
AT4G10780			LRR and NB-ARC domains-contain...		Potri.017G035300 [exp]	14.69	0.9150
AT4G27220			NB-ARC domain-containing disea...		Potri.001G444050 [exp]	16.00	0.9073
AT1G60500		DRP4C	Dynamin related protein 4C (.1...		Potri.003G024600 [exp]	16.85	0.8655
					Potri.001G432540 [exp]	16.91	0.8936

Compare expression of checked genes

Potri.001G419800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.